X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Fcompbio%2Fdata%2Fsequence%2FSequenceUtilTester.java;fp=testsrc%2Fcompbio%2Fdata%2Fsequence%2FSequenceUtilTester.java;h=a4bf4c90c992d89e43a3e65c339867028abfe9e6;hb=a79900255139dc7bcab23320de2a3630f6531107;hp=7f4585589571889d10e558a30644de91e0a1b348;hpb=e3311e7e9e5893438273da7a04e5683abe3af171;p=jabaws.git

diff --git a/testsrc/compbio/data/sequence/SequenceUtilTester.java b/testsrc/compbio/data/sequence/SequenceUtilTester.java
index 7f45855..a4bf4c9 100644
--- a/testsrc/compbio/data/sequence/SequenceUtilTester.java
+++ b/testsrc/compbio/data/sequence/SequenceUtilTester.java
@@ -24,6 +24,7 @@ import java.io.FileNotFoundException;
 import java.io.FileOutputStream;
 import java.io.IOException;
 import java.io.InputStream;
+import java.util.HashMap;
 import java.util.HashSet;
 import java.util.List;
 import java.util.Map;
@@ -164,11 +165,11 @@ public class SequenceUtilTester {
 		try {
 			fio = new FileInputStream(AllTestSuit.TEST_DATA_PATH
 					+ "disembl.out");
-			Map<FastaSequence, Set<Score>> aseqs = SequenceUtil
+			Map<FastaSequence, HashSet<Score>> aseqs = SequenceUtil
 					.readDisembl(fio);
 			assertNotNull(aseqs);
 			assertEquals(aseqs.size(), 3);
-			System.out.println(aseqs);
+			// System.out.println(aseqs);
 			for (FastaSequence fs : aseqs.keySet()) {
 				assertTrue(" Foobar_dundeefriends Foobar dundeefriends "
 						.contains(fs.getId()));
@@ -217,7 +218,7 @@ public class SequenceUtilTester {
 		try {
 			fio = new FileInputStream(AllTestSuit.TEST_DATA_PATH
 					+ "globplot.out");
-			Map<FastaSequence, Set<Score>> aseqs = SequenceUtil
+			HashMap<FastaSequence, HashSet<Score>> aseqs = SequenceUtil
 					.readGlobPlot(fio);
 			assertNotNull(aseqs);
 			assertEquals(aseqs.size(), 3);
@@ -232,12 +233,12 @@ public class SequenceUtilTester {
 				assertEquals(scores.size(), 5);
 			}
 			for (Score score : scores) {
-				
+
 				if (score.getMethod() == (Enum<?>) GlobProtResult.Disorder) {
 					assertEquals(score.getRanges().size(), 7);
 					assertTrue(score.getScores().isEmpty());
 				}
-				if (score.getMethod() == (Enum<?>)GlobProtResult.Dydx) {
+				if (score.getMethod() == (Enum<?>) GlobProtResult.Dydx) {
 					assertFalse(score.getScores().isEmpty());
 					assertTrue(score.getRanges().isEmpty());
 				}