X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Ftestdata%2Fjobs%2F%40Muscle%231359363990598965%2Ffasta.out;fp=testsrc%2Ftestdata%2Fjobs%2F%40Muscle%231359363990598965%2Ffasta.out;h=d4f0c3e674308941ead0bb4d73138d483a74a234;hb=7a5ab825edefa83e8c063359dd86a52dee66b8ef;hp=0000000000000000000000000000000000000000;hpb=451b60b868fc003d2b02a6f453461f365eb83f62;p=jabaws.git

diff --git a/testsrc/testdata/jobs/@Muscle#1359363990598965/fasta.out b/testsrc/testdata/jobs/@Muscle#1359363990598965/fasta.out
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+CLUSTAL W (1.81) multiple sequence alignment
+
+Sequence19      -----WDGV---VTNSSSDNHVE--CLHHLTSFH-----TDIPLTEPEK-----------
+Sequence20      -PHGSWSIEG-CRLGPRNATQITCYCYHLFAIL-------TLKAKDPTV-----------
+Sequence18      -CNRTWDGLS-CWPDVAAGTVAKMPCPVYL--FH------VYKFCDVTG-WHS-SNYSEC
+Sequence9       -CRPFWEAVV-CWPPADVGETVHRPCPAFFSPFS------VSRNCTSAG-WSS-PPYHIA
+Sequence21      ---------S-CWPDAAPGQVVTLPCPEHIAFFK------ICQYCYLHA-W---------
+Sequence5       -CEGMWDNIS-CWPSSVPGRMVEVECPRFLRMLS------LFRNCTQDG-WSP-RPNLAC
+Sequence8       -CPTSWDGIR-CWSRAEVDEVARVSCVNVSQLFS------IYRNCTEDG-WSY-PPYEEA
+Sequence6       -CTTLWDNIR-CWPWAEVGQVVNVSCAEVLQDFF------VYRNCTADG-WSY-PPYQRA
+Sequence7       -CGTDWDGIR-CWHTANTGQLINVSCSDVFQHIF------IYRNCVSNG-WTY-PPYEEA
+Sequence3       -RKGVWDSIA-CWERAEVGEIVTIPCPRVLKTVN------ISRNCTSAG-WSF-PNITSV
+Sequence4       -CRGEWDNVS-CWQSAAVGEVTTLPCPPLLHLFN------LSRTCTEAG-WSW-SDNTDQ
+Sequence22      YCNATTDEIGTCWPRSNSGRIIERPCPEYINGVKYNTTRIAYRECLENGTWALKSNYSNC
+Sequence17      -CDGFWDGV--CWPNTPENNSVSENCPDFFAFF-------ATRFCNIGG-WAS-GLFGGC
+Sequence0       -CPRTWDGFG-CFDDTLAGDETVIKCPEYIEHGD------AVKNCNNNG-WFW-TDYLGC
+Sequence1       -CQQVWDGFS-CFDYAKPGSAMTTPCPTYLQYSE------GVKVCTANA-WQW-TDYTAC
+Sequence2       -CIGTWDGYG-CWRDANPDTENYLSCPNFLQYSN------ALKYCHSNG-WMW-TDYTPC
+Sequence10      -CAGTFDGWL-CWPDTAVGTSAYELCPDFITGFY------AHKECGLDG-WFW-SNYTTC
+Sequence16      -CNRTFDGWG-CWNDTKAGHTAFINCPYFIPNSL------AHRVCMPDG-WFW-SNYTNC
+Sequence15      -CNRTWDGWL-CWDDTPAGVLSYQFCPDYFPDFK------VTKYCDEKG-WFW-SNYTMC
+Sequence14      -CSRNWDGWL-CWDDTPAATYASQNCPNYFVDFK------ATKYCGEDG-WFW-SNYTLC
+Sequence13      -CNRTWDGWL-CWNDVAAGTESMQLCPDYFQDFK------VTKICDQDG-WFW-TNYTQC
+Sequence11      -CNRTWDGWL-CWDDTKAGVISEQHCPDYFQDFM------VTKVCTDGG-WFW-TNYTRC
+Sequence12      -CNRTWDGWL-CWDDTEAGITSEQHCPDYFQDFM------VTKICTESG-WFW-TNFTRC
+                                         *                                  
+
+Sequence19      ---------------LSLQIITYIGCGISSVALLITLVIFLSIESLSTERHRIHLNLVLA
+Sequence20      ----------------YLTYITFIGLGLSIAGCVLTILTHLFLPSLRSERVFIHINLVTA
+Sequence18      H----------QEYLTTIRIIYKIGYAMSLVALTIAMGIFLYFKKLWCPRNIIHMNLFLS
+Sequence9       C----------RSFFATVKLIYTIGYSVSLVLLAVAVSILLLFRRLRCARNFIHIQLFVT
+Sequence21      -----------RMFLYTVQIIYTVGYSLSLVSLTVAMGIIIRFRRLHCIRNYIHLHLFVS
+Sequence5       G----------HSYLLKLKVMYTVGYSSSLVMLLVALGILCAFRRLHCTRNYIHMHLFVS
+Sequence8       C----------TSYFSNYKQVYTAGYATSLISLIMAILVFTIFRKFHCTRNYIHINLFFS
+Sequence6       C----------TSYLATFRQIYTVGYATSLITLITAIVVFTAFRKFRCTRNYIHVNLFSS
+Sequence7       C----------TTYLSTLKQLYTAGYATSLISLITAVIIFTCFRKFHCTRNYIHINLFVS
+Sequence3       C----------LIFYTVVQTLYTLGHSLSLIALITGSAVLCLFRKLHCTRNYIHLNLFLS
+Sequence4       P----------LLFYRVVKILSTLGHSLSLVTLLTSTFIMCFFRRLHCTRNYIHLNLFVS
+Sequence22      EPILEFLQRKYPMHYKIALIINYFGHCVSVGALIIAFILFLCLRR--CLRNIIHWNLITT
+Sequence17      L----------SDETREL------------------------------------------
+Sequence0       V----------INEYKVLFQVGLICNIISIVLLVPACVVFLYYRQLRVQQRIKHICLFVS
+Sequence1       L----------KNAYLIGVYITVAVSSLSIALLVPAIIIFCSFKDLKQHRVRLHIHFFAS
+Sequence2       L----------KESLIESIYLSLGCNIASILLLLPAIAIFLVYRPRKQHRIRLHISFFLS
+Sequence10      V----------LNWRHTVNLISEVGYGTSLLAILLSLAILGYFKSLKCARITLHMNLFAS
+Sequence16      G----------TTESEG-------------------------------------------
+Sequence15      N----------LKNAYVLYYLAIVGHSLSIFTLVISLGIFVFFKYLGCQRVTLHKNMFLT
+Sequence14      N----------LKSAYILFYMAIVGHALSIASLLISLAIFFYFRSLSCQRITLHKNLFCS
+Sequence13      N----------VKTALNLFYLTIIGHGLSIASLLISLGIFFYFKSLSCQRITLHKNLFFS
+Sequence11      N----------RVTAMNLFYLALIGHGLSLTSLFISLGIFFHFKSLSCQRITLHKNLFFS
+Sequence12      N----------RRTAMNLFYLALIGHGLSLTSLFISLGIFFHFKSLSCQRITLHKNLFFS
+                                                                            
+
+Sequence19      LFLAQILFLS-------------GINAKIGCQVVAAFLHYFYTVAFTWMLNEGVHLYLKV
+Sequence20      ILFAQILFIV-----------GATHREQSLCLSVAVLLYFFYMSVFTWMLVEGIHIYCLV
+Sequence18      FILRAIIVFV-----------RDSIQDQSLALVAKH---EELMKN---IDIDHIFSGNFT
+Sequence9       FILKAVAVFV-----------KDAALFTFACKASVVFCHYCVMANFFWLLVEALYLNSLL
+Sequence21      FILRAVFIFV-----------KDAVLFVSICKIVVTLYNYFIAANYFWLLVEGLFLHSLI
+Sequence5       FILRALSNFI-----------KDAVLFRAGCKLVMVLFQYCIMANYSWLLVEGLYLHTLL
+Sequence8       FILRASAVFI-----------KDAVLFTASCKAAVAFFQFSILANYFWLLVEGMYLQTLL
+Sequence6       FILRASAVFI-----------KDTVLFTTACKSAVAFFQFSILANYFWLLVEGMYLQTLL
+Sequence7       FILRASAVFI-----------KGTVLFTVLCKSAVTFFQFCILTNYFWLLVEGLYLQTLL
+Sequence3       FILRAVAVLA-----------KDDILFLAGCKTSLVFFQYFIMANFFWLLVEGLYLHTLL
+Sequence4       FMLRAVAVLA-----------KDTLLFLVGCKAILVFFNYFVMANFFWLLVEGLYLHTLL
+Sequence22      FILRNVMWFLLQLVDQNIYETNEVCFAQPWCRLITTIYNYFVVTNFFWMFVEGCYLHTAI
+Sequence17      ---------------------MEQEFQKGLCETFEYFRQYTRFCVFSWMFVEGLYLNGMI
+Sequence0       FVFTSVVMIL-----------WDVLVFPPGCRVLYILTRYALSTAYVWMFLEGFHLHRLI
+Sequence1       LTLSFVASIL-----------WYMLVHPGWCQLLSFAKIYLTATNYFWMFCEGYYLHRLI
+Sequence2       FILSDVTAIL-----------WDVVVTGAGCKALSFFRIYCKSTNYVWMFCEGFYLHRLI
+Sequence10      FAANNSLWLV-----------WYLLVMPMRCVALHITLHYFLLSNYSWMLCEGFYLHTVL
+Sequence16      --------------------------TQVSCKILNVMMQYFWTSNYYWMLCEGIYLHTLI
+Sequence15      YILNSMIIII-----------HVEVVPPVSCKILHFFHQYMMACNYFWMLCEGIYLHTLI
+Sequence14      YVLNSALTII-----------YLVAVVPVGCKVLHFFHMYMLGCNYFWMLCEGIYLHTLI
+Sequence13      FVCNSVVTII-----------HLTAVAPVSCKVSQFIHLYLMGCNYFWMLCEGIYLHTLI
+Sequence11      FVLNSVITII-----------WLTAVAPTSCKVSMFIHLYLFGCNYFWMLCEGIYLHTLI
+Sequence12      FVLNSIITII-----------WLTAVAPISCKISQFIHLYIFGCNYFWMLCEGIYLHTLI
+                                              .                 :  :  .     
+
+Sequence19      VKVFRIENVLLH-YYIFGWGFPAVIVGISAAIKNSYGTI-CWLSLSD---FVWAFIGPVT
+Sequence20      IRVFNSGRGKKI-YTVIGWGFLSIFPSGMPAFRSSTTSR-CWLSLEG---AIWAFVAPAL
+Sequence18      IPSFS-------------------------------------------------------
+Sequence9       VSSFCHARRVWG-FSLLGWGVPVLFISVWIASRLYFEDE-CWDINEP---YWWIIKGPIV
+Sequence21      AVGFFSERK-RW-YMVLGWGAGHCLFCNI--------HS-CWEIKHQ---YWWIYRGPIL
+Sequence5       AISFFSERKLQG-FVAFGWGSPAIFVALWAIARHFLEDG-CWDINAS---IWWIIRGPVI
+Sequence8       ALTFAFQKKFWW-YIVIGWGLPTTIITVWILTRHFYDNG-CWDDTDF---IWWIIRVPIT
+Sequence6       ALTFVSQRKFWW-YILIGWGLPSAVLVLWVLTRFIYDNS-CWDDTDA---IWWIIKGPIT
+Sequence7       ALTFVSQRKFWW-YILIGWGVPSVVLVVWVLTRQFYDNG-CWDDTDN---IWWIIKGPIT
+Sequence3       VVIFSENRHFIV-YLFIGWGIPAVFVFVWVMMRIYLEDG-CWETNDI---PNWVINGPIG
+Sequence4       LIIRNASIRLPV-YMLIGWGIPFVFMVAWVICRVNLEDR-CWEMNEV---PNRLINWPIM
+Sequence22      VMTYSTDKLRKWVFLFIGWCCPII--IVWAIAKLYNENEQCWFGKEPGKYVDYIYQGPVI
+Sequence17      TAAVFQKPNFKL-YYFIGWILPLFPVTAWAITMKFTTEA-CWFGYVP---YYWIVEIPRN
+Sequence0       VKAFKVPKSIIH-YHFIGWGFPVIPIIAYTVIRITRNDN-CWVNNAD---YEWIVYLPNL
+Sequence1       SNAFEPPSSLFL-LYVLGWGAPAIAVLVYSFMRIGMANS-CWAISFH---YEWIIYAPNL
+Sequence2       SNAFKPPKSLYP-LYLTGWGLPMIYSVIYAALRASLANS-CWAKSFQ---YEWIIYAPNL
+Sequence10      VAAFISEKRVKW-LIAFGWGSPAIVIFVYSMARGTPEDH-CWMNQN----YQNILMVPVC
+Sequence16      VVAVFSDRNLIW-YYLLGWVVPFIPVTIYTILRAVEGHE-CWFFGTD---YEFIIAGPII
+Sequence15      VVAVFTEKQLRW-YYLLGWGFPLVPTTIHAITRVYFNDN-CWLSVEH---LLYIIHGPVM
+Sequence14      VVAVFAEEQLHW-YYLLGWGFPLVPASIHAVARKYFDDN-CWMSVEH---LLYAVHGPIV
+Sequence13      VVAVFAEKQLMW-YYFLGWGFPLIPACIHAIARLYYNDN-CWISSDH---LLYIIHGPIC
+Sequence11      VVAVFAEKQLTW-YYLLGWGFPLIPASIHAVARYYYNDN-CWISSKS---LLYIIHGPIC
+Sequence12      VVAVFAEKQLMW-YYLLGWGFPLIPATIHAVARYYYNDN-CWISSNS---LLYIIHGPIC
+                                                                            
+
+Sequence19      FIIAINCLILIVVVKTIVNSASTVKNDHAI---AGVKGALVLMPLLGVSWISGLLAVNK-
+Sequence20      VVIAFNLVILFMVLRVTAVMLKDESQNVCS---ALVKAFVTLLPILGLTWLFGFLAFNN-
+Sequence18      VNTVVTFLLFLNIIRVLATKLIATNAEAKL---KLAKSTMVLIALFGLYYVITLVIPPQ-
+Sequence9       ASIAVNFMLFMNIIRILVQKLNPRLINSSY---RLAKSTLLLIPLFGTHYMLFNFLPDY-
+Sequence21      VSVLVRGIYLVNYVR-----------KNIF---KLTRSTLVLIPLFGVHYIVFIGLPED-
+Sequence5       LSILINFILFINILRILMRKLRTQETEVSY---RLARSTLLLIPLFGIHYIVFAFSPED-
+Sequence8       ASLLVNFLIFINVIRILVQKLRSPSVDTSF---RLAKSTLLLIPLFGMHYMVFALLPEH-
+Sequence6       VSLLVNILIFINVIRILVQKLKSSAMDTGY---RLAKSTLFLIPLFGMHYTVFAFLPEN-
+Sequence7       ASLFTNIIIFLNVIRILVQKLKSPGVDTGF---RLAKSTLFLIPLFGMHYTLFAFLPEN-
+Sequence3       FSIMVNFLLFVSIIRILVQKLRCPDVDQSY---RLAKSTLLLIPLFGIHYVIFVTLGAE-
+Sequence4       ASVIINFIFFISIIRILVQKLQCADVEQSF---RLAKSTLLLIPLFGINYVVFVYMPSD-
+Sequence22      LVLLVRFLF--NIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGED
+Sequence17      LILLINLGFLINIIRILVTKLRESNTETQL---KAVKAAILLAPLLGVTNLLF--LPDN-
+Sequence0       FCIAFNVFFLMNILRILMTQLQSHPNEPSY---RALKATFILVPLFGLQLFFIIYRPPS-
+Sequence1       LCLFASVGFLCNILRILIFQLHSHPNEPSF---RALKAAFMLIPLFGLQMFLTIYRPPV-
+Sequence2       LCLVVNLFFLCNILRVLVTQLQTHPNEPSF---RALKATFVLIPLFGIQLFVTLYRVPA-
+Sequence10      ISMFLNLLFLCNIVRVVLLKLNAPASGPS----RAFRATLLLVPLLGLQYILTPFRPAP-
+Sequence16      AVLVINFVLLLNIVRVLVTKLRATHTDTHY---KAVRATLILLPLLGLHYIIMPFQPAK-
+Sequence15      AALVVNFFFLLNIVRVLVTKMRETHEESHY---KAVKATMILVPLLGIQFVVFPWRPSN-
+Sequence14      AALLVNLFFLLNIIRVLVTKLRDTHRESNY---KAVRATLILVPLLGIQFVIFPWRPEN-
+Sequence13      AALLVNLFFLLNIVRVLITKLKVTHQESNY---KAVRATLILVPLLGIEFVLIPWRPEG-
+Sequence11      AALLVNLFFLLNIVRVLITKLKVTHQESSY---KAVRATLILVPLLGIQFVLFPYKPDG-
+Sequence12      AAMLVNLFFLLNIVRVLITKLKVTHQKSSY---KAVRATLILVPLLGIQYVLLPYKPSG-
+                             :.                     .. . * .::*             
+
+Sequence19      --DTVFFQYVFAITNSFQGFLIFLLHVVFNTEVRINL-----
+Sequence20      --KTVMFEYLFAIFNSMQGFLIFVFYCLLSSEV---------
+Sequence18      --VEKFRLAWDLILPPFQGLAVAILYCFMNGEVKAEISKRWH
+Sequence9       --NVNLRLCIELCIGSFQGLFVAILYCFLNQEVRTEISRKWH
+Sequence21      --VTGQVKYVSYF---FQGMIVAVLYCFMNGEVR--------
+Sequence5       --AMEIQLFFELALGSFQGLVVAVLYCFLNGEVQLEVQKKWQ
+Sequence8       ----EARIFIELGLGSFQGFVVALLYCFLNGEVQAELKKRFW
+Sequence6       ----TARLYIELGLGSFQGFVVALLYCFMNGEVQTELRR---
+Sequence7       --GEIIRFYIELGLGSFQGFVVALLYCFLNGEVQAELKRRLW
+Sequence3       ----DYKIFFDLALGSFQGLVVAILYCFLNSELQVELKRIWR
+Sequence4       ---NYVKIFFELGLGSFQGLIVAVLYCFLNSEVQSELRRMGR
+Sequence22      DISQIVFIYFNSFLQSFQ-VFVSVFYCFLNGEVSPARKRWHR
+Sequence17      --VIVLYFYGVMIVTPFQGVIVSLLHCFVNGEVRLLLRRKWA
+Sequence0       --GSFMYEVISKIVNNLQSTVVALYFSYISGSFNIVFFLYFR
+Sequence1       --GHREYEYVFYVNSSSQGIFVALIFCFFNGEVATQLKLRCP
+Sequence2       --AAGAYEKFTTFVINSQGFFVALIFCFCNGEVRIKEAFLFR
+Sequence10      --WENTYEIISAFTASFQGLCVAILFCFCNGEVIAQMKRKWR
+Sequence16      --AKQIYDLIIAILIAFQGFFVACIFCFFNGEIRAQIARKYR
+Sequence15      --LGKIYDYVMHSLIHFQGFFVATIYCFCNNEVQTTVKRQWA
+Sequence14      --AGEVYEYIMHILMHYQGLLVATIFCFFNGEVQAALKRQWM
+Sequence13      --AEEVYDYIMHILMHFQGLLVSTIFCFFNGEVQAILRRNWN
+Sequence11      --SSEIYDYIMHIFMHYQGLLVATIFCFFNGEVQAVLRRHWN
+Sequence12      --SAEIYDYIMHILMHYQGLLVATIFCFFNGEVQAVLRRHWN
+                                 *   :   .   . ..