X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Ftestdata%2Fljobs%2FMafft%237868649707286965%2Ffasta.out;fp=testsrc%2Ftestdata%2Fljobs%2FMafft%237868649707286965%2Ffasta.out;h=5444003296add4271da95dead98c08e08b4b855d;hb=7a5ab825edefa83e8c063359dd86a52dee66b8ef;hp=0000000000000000000000000000000000000000;hpb=451b60b868fc003d2b02a6f453461f365eb83f62;p=jabaws.git

diff --git a/testsrc/testdata/ljobs/Mafft#7868649707286965/fasta.out b/testsrc/testdata/ljobs/Mafft#7868649707286965/fasta.out
new file mode 100644
index 0000000..5444003
--- /dev/null
+++ b/testsrc/testdata/ljobs/Mafft#7868649707286965/fasta.out
@@ -0,0 +1,52 @@
+CLUSTAL format alignment by MAFFT FFT-NS-2 (v6.713b)
+
+
+Foobar          MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV
+Barbar          ------------------------------------------------------------
+Foofriend       MTADGPRELLQLRAAVRHRPQD-VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV
+                                                                            
+
+Foobar          ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL
+Barbar          ----------------------ASDAAPEHPGIALWL-HALEDAGQAE-AAAAYTRAHQL
+Foofriend       ARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED--------------HQL
+                                      *************** *****              ***
+
+Foobar          LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC
+Barbar          LPEEPYITAQLLN--------------------AVAQGVGAVEPFAFLSEDASAAE----
+Foofriend       LPEEPYITAQ-------------LDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC
+                **********                       ***********************    
+
+Foobar          ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM
+Barbar          ----------SVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM
+Foofriend       ARTRAQAIAASVRPLAPTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQM
+                          **************************************************
+
+Foobar          HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV
+Barbar          HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV
+Foofriend       HLFATSGDDGSTLRTRLAQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEV
+                ************************************************************
+
+Foobar          FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR
+Barbar          FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR
+Foofriend       FALRPAPVQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSR
+                ************************************************************
+
+Foobar          VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA
+Barbar          VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA
+Foofriend       VVAEPPSRTQCGLPEQGVVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA
+                ************************************************************
+
+Foobar          RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL
+Barbar          RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL
+Foofriend       RLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVL
+                ************************************************************
+
+Foobar          TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKA------------------------
+Barbar          TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES
+Foofriend       TTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRES
+                ************************************                        
+
+Foobar          ----------------------------
+Barbar          GVFEMDGFADDFGALLQALARRHGWLGI
+Foofriend       ---------------------------I
+