X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Ftestdata%2Fljobs%2FMafft%237918237850044965%2Ferror.txt;fp=testsrc%2Ftestdata%2Fljobs%2FMafft%237918237850044965%2Ferror.txt;h=0c72b73d39a11877454fb421445b32d6757c4c23;hb=7a5ab825edefa83e8c063359dd86a52dee66b8ef;hp=0000000000000000000000000000000000000000;hpb=451b60b868fc003d2b02a6f453461f365eb83f62;p=jabaws.git diff --git a/testsrc/testdata/ljobs/Mafft#7918237850044965/error.txt b/testsrc/testdata/ljobs/Mafft#7918237850044965/error.txt new file mode 100644 index 0000000..0c72b73 --- /dev/null +++ b/testsrc/testdata/ljobs/Mafft#7918237850044965/error.txt @@ -0,0 +1,80 @@ +done. +scoremtx = 1 +Gap Penalty = -1.53, +0.00, +0.00 + + + +Making a distance matrix .. + + 1 / 13 + 11 / 13 +done. + +Constructing a UPGMA tree ... + + 0 / 13 + 10 / 13 +done. + +Progressive alignment ... + +STEP 1 / 12 f +STEP 2 / 12 f +STEP 3 / 12 d +STEP 4 / 12 d +STEP 5 / 12 f +STEP 6 / 12 d +STEP 7 / 12 d +STEP 8 / 12 d +STEP 9 / 12 d +STEP 10 / 12 d +STEP 11 / 12 d +STEP 12 / 12 d +done. + +disttbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000 +blosum 62 / kimura 200 +done. +scoremtx = 1 +Gap Penalty = -1.53, +0.00, +0.00 +Making a distance matrix .. + + 0 / 12 + 10 / 12 +done. + +Constructing a UPGMA tree ... + + 0 / 13 + 10 / 13 +done. + +Progressive alignment ... + +STEP 1 /12 f +STEP 2 /12 f +STEP 3 /12 d +STEP 4 /12 d +STEP 5 /12 f +STEP 6 /12 f +STEP 7 /12 d +STEP 8 /12 d +STEP 9 /12 d +STEP 10 /12 d +STEP 11 /12 d +STEP 12 /12 d +done. +tbfast (aa) Version 6.713b alg=A, model=BLOSUM62, 1.530, -0.000, -0.000 +comment = FFT-NS-2 +done. +scoremtx = 1 + + +Strategy: + FFT-NS-2 (Fast but rough) + Progressive method (guide trees were built 2 times.) + +If unsure which option to use, try 'mafft --auto input > output'. +If the possibility of long gaps can be excluded, add '--ep 0.123'. +For more information, see 'mafft --help', 'mafft --man' and the mafft page. +