X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Ftestdata%2Fljobs%2FMafft%237952628756081965%2Ffasta.out;fp=testsrc%2Ftestdata%2Fljobs%2FMafft%237952628756081965%2Ffasta.out;h=708af53a7da7bc88a73a3a26bfffee107429c00b;hb=7a5ab825edefa83e8c063359dd86a52dee66b8ef;hp=0000000000000000000000000000000000000000;hpb=451b60b868fc003d2b02a6f453461f365eb83f62;p=jabaws.git

diff --git a/testsrc/testdata/ljobs/Mafft#7952628756081965/fasta.out b/testsrc/testdata/ljobs/Mafft#7952628756081965/fasta.out
new file mode 100644
index 0000000..708af53
--- /dev/null
+++ b/testsrc/testdata/ljobs/Mafft#7952628756081965/fasta.out
@@ -0,0 +1,67 @@
+CLUSTAL format alignment by MAFFT FFT-NS-2 (v6.713b)
+
+
+Sequence0       MADTLESSLEDPLRSFVRVLE-KRDGTVLRLQQYSSGG---VGCVVWDAAIVLSKYLETP
+Sequence1       MAAAVEPEVEDPLWSFVRVLE-KRDGTVLRLQQYGSGG---VGCVVWDAAIVLSKYLETP
+Sequence2       MA------------GFVRELE-RRAGPALRLEQ-RAGG---VGCVVWDAALVLAKFLET-
+Sequence3       MA--------EPTDCFLRELE-LSDGSVVAIRQLSSGD---VGCVVWDAAIVLSKFLESQ
+Sequence4       MA-----SNANASEYFVREIE-NNDGCTLKVKQCYVGD---VGCVVWDAAIVLAKYLETK
+Sequence5       MA-----ADEDSEDYFVREIE-KNDGSVLRMYQCSKGD---VGCVVWDAAIVLSKYLETE
+Sequence6       MADDNKIAAVDMTNLFTRELE-GNYGN-LVIKQAVSGD---VGCVVWDAAIVLAKYLETD
+Sequence7       MA---------ESEEYARVISFNNDHDELIIYQETVTD---VGGVIWDSALMTIHYF---
+Sequence8       MP---------ENEEYARIIPFNNDESELTIFQETVTD---VGGVIWDSALMTIHYF---
+Sequence9       RVERYQSPAGAPLQCSVQV-------------QTTSGARALADTLCWQPELI--------
+Sequence10      ------------------DLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETT
+                                                            :      .        
+
+Sequence0       EF--SGDGAHALSRRSVLELGSGTGAVGLMAATLGAD-VVVTDLEELQDL--LKMNINMN
+Sequence1       GF--SGDGAHALSRRSVLELGSGTGAVGLMAATLGAD-VIVTDLEELQDL--LKMNIDMN
+Sequence2       -------GAWPLSRRAVLELGAGTGAVGIMAATLGAD-VTLTDLQELQEL--LAVNIENN
+Sequence3       EF--KLPGGQRLSGKCVLELGAGTGIVGIVAATQGAN-VIVTDLEDLQEL--MKINIESN
+Sequence4       QFYDPPSGVNVWSGRRVVELGAGTGVVGLMAATLGAQ-VIVTDLEELQKL--LKVNIKDN
+Sequence5       QFCSIGSGVSMWSSKNIIELGAGTGLVGLVAASLGAN-VTLTDLEDLQPL--LQLNIKKN
+Sequence6       GF----NVNYGLAKKRAVELGAGTGVVGLAAAAMGAD-VVGTDLEDFIPL--IDLNKRTN
+Sequence7       -F----KYPKPFEGKKVLELGSGTGVGGIALAALGAD-VIITDLPERLAL--IEKNVEAN
+Sequence8       -F----KHPAKFEGKKVLELGSGTGVCGIALAALGAD-VIITDLPERIPL--LEKNLAAN
+Sequence9       ------------AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREH
+Sequence10      RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDI-DPMVLPQAEANAKRN
+                                  :**:*:*  .:     *.. .  .*  :   *     *   :
+
+Sequence0       K---HLV-TGSVQAKVLKWGEEIEGFPSPP------------DFILMADCIY--------
+Sequence1       K---HLV-TGSVQAKVLKWGEDIEDLMS-P------------DYILMADCIY--------
+Sequence2       R---HLV-TGSVRAEVLKWGEDVSEFRPPP------------DYILMADCIY--------
+Sequence3       S---HLI-TGSCQAKVLKWGEEVKDLVPKP------------DYILLADCIY--------
+Sequence4       Q---ALVSRGSITAKVLKWGGDVSEFLPPP------------RYVLMADCIY--------
+Sequence5       Q---QLIHTGSVTAKVLKWGANVDDFLPHP------------HYILMADCIY--------
+Sequence6       G---HLI-TGKFSARCLKWGSDVSSFLPHP------------DYVFIADCIY--------
+Sequence7       R---KLT-GNRIKVQVLDWTKDRI-----PEGL---------DMVLAIDCVY--------
+Sequence8       K---HLT-GNRIKVEVLDWMTDKT-----PDGL---------DLVLAVDCVY--------
+Sequence9       --------RASPKVVPYRWGDS-------PDSLQRCTGLQRFQVVLLADLLS--------
+Sequence10      GVRPRFL-EGSLEAAL-------------PFG----------PFDLLVANLYAELHAALA
+                             .               *               :    :         
+
+Sequence0       --YEESLEP-----LLKTLKDI----SGFETCIICCYEQRTMGKNPEIEKKY----FELL
+Sequence1       --YEESLEP-----LLKTLKDL----SGSETCIICCYEQRTMGKNPEIEKKY----FELL
+Sequence2       --YEESLEP-----LLKTLREL----TGPDTCVLCCYEQRTVGRNPEIERRY----LELL
+Sequence3       --YEESLEP-----LLKTLKDL----TGIDTCILCCYEQRTMGKNPQIERRF----FELL
+Sequence4       --YEQSIVP-----LVESLKLL----SGPETCIICCYEKRTEGVNPEVERKF----FELL
+Sequence5       --YEQSVEP-----LVETLKLL----AGPETCIICCYEQRTVGVNPEIEKRF----FELL
+Sequence6       --YEESLEP-----LVQTMNDL----SGHQTSIFLCYEERRTGNKLELEKKF----FKLT
+Sequence7       --YNSTIDP-----LITLLNDC----DAKE--IMVVSEERDIGEAHLAQKSF----FKDI
+Sequence8       --YNSTITP-----LIDLLKNC----DAKE--IIVVSEERDIGEASVAQKTF----FKNI
+Sequence9       --FHQAHDA-----LLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAF----FRLV
+Sequence10      PRYREALVPGGRALLTGILKDR----------------------APLVREAMAGAGFRPL
+                  :..:  .     *   :.                                    :.  
+
+Sequence0       QLDFDFEKIPLEKHDEEYRSE---DIHIIYIRKKKSKFPS
+Sequence1       QLDFDFEEIPLDKHDEEYRSE---DIHIVYIRKKKPKPPS
+Sequence2       QVDFELERVPLDQHDEEYRSE---DIHILTIHRKRTNSPP
+Sequence3       KEDFKYEKVPLEKHDKEYRSE---DIHILEIYRK-----T
+Sequence4       QQTFICEKIPSDKQDPEFSSP---DIHILHICKK-----C
+Sequence5       LQDFQSEEISSEKQDPEFNSP---DIHILHLRRRV----S
+Sequence6       KKLFTLEEIPHSKQDPLYHSN---DIHILHLRRHPPSD-G
+Sequence7       QKFFRLELIPQKELDEDYCAD---DIIIGKLIRN-----V
+Sequence8       TEFFQLVPISQKELDPDYCAN---DIIIRKLIRN-----I
+Sequence9       NADGALIAEP-------WLSPLQMQVHRWRLRWR------
+Sequence10      EEAAEGEWVLLAYG-------------------------R
+