X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=testsrc%2Ftestdata%2Fljobs%2FMuscle%231478763156946965%2Ffasta.out;fp=testsrc%2Ftestdata%2Fljobs%2FMuscle%231478763156946965%2Ffasta.out;h=fa6b0b0581780fa8ec1391af93b0c3bd4f9143c9;hb=7a5ab825edefa83e8c063359dd86a52dee66b8ef;hp=0000000000000000000000000000000000000000;hpb=451b60b868fc003d2b02a6f453461f365eb83f62;p=jabaws.git diff --git a/testsrc/testdata/ljobs/Muscle#1478763156946965/fasta.out b/testsrc/testdata/ljobs/Muscle#1478763156946965/fasta.out new file mode 100644 index 0000000..fa6b0b0 --- /dev/null +++ b/testsrc/testdata/ljobs/Muscle#1478763156946965/fasta.out @@ -0,0 +1,181 @@ +CLUSTAL W (1.81) multiple sequence alignment + +Sequence12 ----------------------------------------------VDSMVCFTQTKPGA +Sequence0 ---------------------------------------------TWDG-GCWRDANPDN +Sequence1 ---------------------------------------------TWDG-SCWTTQSPGA +Sequence13 ---------------------------------------------YYDE-VCWVASPPGV +Sequence16 SCRLLAAMATGSSDLHLELLVLVFLVTNVPAVTFLSLLLRSGCTGMWDKIACWPSADLGA +Sequence17 MCDI-------ERELNKEKEACEAQMENKTA----------GCTGMWDKIACWPSADLGA +Sequence7 ---------------------------------------------EWDG-ICWPRGTVGS +Sequence5 ---------------------------------------------EWDG-ICWPRGSPGT +Sequence6 ---------------------------------------------EWDG-ICWPQGFPGT +Sequence9 ---------------------------------------------EWDG-FCWPYGTPGV +Sequence8 ---------------------------------------------EWDK-TCWPNSAPGV +Sequence10 ----------------------------------------------WDTVSCWPTTPAGA +Sequence11 ----------------------------------------------QDEFSCWPATPEGA +Sequence14 ------------------YLLTI----------------EIYCNWTWDSVLCWPPTKEDT +Sequence15 -------------MSSGEYLNKTVEICVEKFKNFLPPNGEIYCNWTWDSVLCWPPTKEDT +Sequence4 ---------------------------------------------TFDG-SCWNATPAGS +Sequence2 ---------------------------------------------IFDE-LCWPETLGGV +Sequence3 ---------------------------------------------NFDG-LCWPRTPAGL + * *: . + +Sequence12 --YSGCPT---------------LNSSKECYMNGTW------------------------ +Sequence0 --YLSCPN---------------LNALKYCHSNGTW------------------------ +Sequence1 --IQGCPA---------------LNSAKSCTANGTW------------------------ +Sequence13 --ERQCPE---------------FTVTRLCMFNGSW------------------------ +Sequence16 EVTIPCPKYLFFFSGDALPPRSPGNLSKTCTADG-WTPVSIDYTGDCGYDPNDTVN---- +Sequence17 EVTIPCPKYLFFFSGDA----QPRNLSKTCTADG-WTPVSIDYTGDCGYDPNDTVN---- +Sequence7 --AVPCPP---------------IVAFRHCNPNGTW------------------------ +Sequence5 --RVPCPS---------------IHAYRTCDINGSW------------------------ +Sequence6 --KTPCPG---------------IHAYRRCDSNGSS------------------------ +Sequence9 --GAECPP---------------FHAYRHCGLSGNW------------------------ +Sequence8 --RLPCPE---------------ITVDRYCMSDGTW------------------------ +Sequence10 --VLTCPP---------------FNATRMCYPNGTW------------------------ +Sequence11 --TIPCPK---------------LNATRFCGEDGVW------------------------ +Sequence14 VAVQNCPKDYNYFKTLT------ELVYKKCLPGGRWEGRIKGHDDSPQGWTNYTTCFTPE +Sequence15 VAVQNCPKDRGIDPS--------KLVYKKCLPGGRWEGRIKGHDDSPQGWTNYTTCFTPE +Sequence4 --VAPCPY---------------FMAHKICTEEGTW------------------------ +Sequence2 --NQSCPK---------------KFAYKDCLENGSW------------------------ +Sequence3 --SQYCPD---------------FLAHKTCLENGSW------------------------ + ** . * * + +Sequence12 ------------------------------VLGRSISLFALCIAFASFCIL----RNLKM +Sequence0 ------------------------------YLCNIASILLLLPAIAIFLVY----KQHRI +Sequence1 ------------------------------NLLNVISIVFIIPAIVIFLAF----QQNRV +Sequence13 ------------------------------ILGYSLSFTTLLGAFVILVYF----RCVRN +Sequence16 --------HEVSRDEVHVQESFYNAVKVGYTVGHSVSLVSLTVGVIILCVF-RKIHCTRN +Sequence17 --------HE-------VQESFYNAVKVGYTVGHSVSLVSLTVGVIILCVF-RKLHCTRN +Sequence7 ------------------------------VMGYSISFGSLAVAILIIGYF----HCTRN +Sequence5 ------------------------------VIGYAVSFSSLMVAILIMGFF----HCTRN +Sequence6 ------------------------------IMGYAVSFSSLLVAIFIIGYF----HCTRN +Sequence9 ------------------------------KIGYSISLVSLFIAFIILARF----HCTRN +Sequence8 ------------------------------SLGYSFSLVALVFAMIILAYF----HCTRN +Sequence10 ------------------------------VIGFTTSIVALIVALCIFLYF----RCLRN +Sequence11 ------------------------------IIGFIITTIALVAALIIFLYF----RCLRN +Sequence14 TWQLFKMLYADSEDTAKIKLDIAEKTRTLEIVGFSVSLIALLFSLAIFFRFRRGLRNSRT +Sequence15 TWQLFKMLYADSEDTAKIKLDIAEKTRTLEIVGFSVSLIALLFSLAIFFRF-RGLRNSRT +Sequence4 ------------------------------YIGYSVSLIALVMSLAILIAF----KCTRI +Sequence2 ------------------------------FVGYSISLAALVISLAIFFTF----KCTRI +Sequence3 ------------------------------YVGYALSLLALLISIIIFLGF----RCTRI + : : : .. : . . + +Sequence12 IIHWNFVMSLIIRNVTWF--------------LL-------F------------------ +Sequence0 RLHISFFLSFILSDVTAI--------------LW-------D------------------ +Sequence1 KVHIHLLIALGLCSFVTM--------------LW-------Y------------------ +Sequence13 YIHLNLVTSFLLLYLIFF--------------LM-------I------------------ +Sequence16 YIHIHLFVAFILKAVTVF--------------IK-------DVVLFGVGETMKCRFRSER +Sequence17 YIHIHLFVAFILKAVTVF--------------IK-------DVVLFGVGETMKCQ----- +Sequence7 YIHMHLFVSFMLRATSIF--------------VK-------D------------------ +Sequence5 YIHMHLFLSFMLRAVSIF--------------VK-------D------------------ +Sequence6 YIHMHLFVSFMLRAASIF--------------VK-------D------------------ +Sequence9 YVHMHLFVSYMLRAFFIL--------------LR-------D------------------ +Sequence8 YIHMHLFASFILRAVVIF--------------VK-------D------------------ +Sequence10 TIHCHLIVTFIFKYILWL--------------IM-------N------------------ +Sequence11 VIHCHLIVTFILRHILWV--------------IM-------H------------------ +Sequence14 RIHKNLFIAMEIQVVVRLSLYIDQVIVKE--FFFQ-----PF------------------ +Sequence15 RIHKNLFIAMEIQVVVRLSLYIDQVIVKEKINFWQGIHDTPF------------------ +Sequence4 YIHRNLFASFIINNAMWL--------------LW-------Y------------------ +Sequence2 RIHIQLFISFALNNLMWI--------------IW-------Y------------------ +Sequence3 RIHVHLFASLACTCVAWI--------------LW-------Y------------------ + :* :. : . . + +Sequence12 ----------------------GCRVFAILFNYALIVTFSWMMVEGIMIHRKLES--FMS +Sequence0 ----------------------VCKALSFFRIYCKSTNYVWMFCEGFYLHRLISN--FKP +Sequence1 ----------------------ACQVLAVLKLYLSSSTYWWMLCEGIYLHRLLVN--FHP +Sequence13 ----------------------ICRLQATALFYINLTSFFWMFVEGLYLHTMVVR--LAV +Sequence16 QRFYGLTVVFMLNASIRLVFQVGCKAVMVFFHYGIMASFFWLLVEGLYLHTLLAVS-FFS +Sequence17 -------------------ATVGCKAVMVFFHYGIMASFFWLLVEGLYLHTLLAVS-FFS +Sequence7 ----------------------RCKIAVVMFIYFLATNYYWILVEGLYLHNLIFV--FFS +Sequence5 ----------------------RCKVTVVLFIYFLATNYFWILVEGLYLHSLIFM--FRT +Sequence6 ----------------------HCKVTVLLFIYFLATNYYWILVEGLYLHSLIFM--FLS +Sequence9 ----------------------ACKLLYTCFMYFMATNYFWILVEGLYLHNLIFV--VFS +Sequence8 ----------------------RCKLVMTLFHYFVATNYYWILVEALYLHSLIFV--FFS +Sequence10 ----------------------NCKIIVALYNYIQVANFFWMLVEGLYLHTMIVW--FSI +Sequence11 ----------------------NCKLIVTVYNYLHGTNFFWMFVEGLYLFTIIVW--YSA +Sequence14 ----------------------LCEISYILLEYARTAMFMWMFVEGLYLHNMISVTVFHK +Sequence15 ----------------------LCEISYILLEYARTAMFMWMFVEGLYLHNMITVTVFHK +Sequence4 ----------------------KCKILHVLLHYFLVSNYFWMFCEGLYLHTVLVV--FLS +Sequence2 ----------------------KCQALHLVVHYLMLANYMWMFCEGLHLHLALVV--FVR +Sequence3 ----------------------RCIGLHLVVHYFMLVNYFWMFCEGLHLHLVLVV--FVK + * * : *:: *.: :. : + +Sequence12 MASRCV---LLGW---IPIMMFWAILKE----NKDNH--------DYIYLVPIGIVLLIN +Sequence0 PKLPLY---LTGW---MIYSVIYAALRA----NESCW--------EWIIYAPNLLCLVVN +Sequence1 PKLMFC---VLGW---AVCIVIYAAIRS----NTHCW--------EWIVYAPNLLCLIVN +Sequence13 RRKVYC---LIGW---VIFSVAYAITVA----TGTCL--------EYIIRVPIIAVILVN +Sequence16 ERKYFWGYILIGWGAPPVFIAAWVITKA-CLNDDRCWDIIDDTL-WWIIKTPILVTILVN +Sequence17 ERKYFWGYILIGWGAPPVFIAAWVITKA-CLNDPGCWDIIDDTL-WWIIKTPILVTILVN +Sequence7 DTYGFI---LIGW---AAFVAAWAVARA----DARCW--------KWIYQAPILAAIGLN +Sequence5 ANYGFI---LMGW---AVFVAVWAIVRA----DARCW--------KWIYQVPILMAIALN +Sequence6 DSYGFT---LIGW---AVFVAAWAVVRA----DARCW--------KWIYQVPILTAIGLN +Sequence9 ERFGFI---AIGW---LTFVVPWVVVRE----DTGCW--------KWIYKAPIVVSIVVN +Sequence8 DKYRFS---VTGW---ILFVVPWAIVRD----DTACW--------KWIYNGPIVVANVIN +Sequence10 ERRYYA---VLGW---ALVVLAWAIVKE----NRRPM--------DYIYITPILGVLLVN +Sequence11 DKRYYV---IIGWG--LLFLLVDVMLSF----SPV----------DYILHAPIFFVLVSN +Sequence14 EQSYYTMYSIIGWGSPIIITSAWILVMITYYKTSKCWWGYNLTIYFWILEGPRLTVVVVN +Sequence15 EQSYYTMYSIIGWGSPIIITSAWILVMITYYKTSKCWWGYNLTIYFWILEGPRLTVVVLN +Sequence4 ENSWFH---LIGW---AVVTSIYAGVRI----PEECW--------TWILSGPVCLSMLTN +Sequence2 DAEWFF---ALGW---FIIVLIYSVVRI----LKDCW--------SWILTAPVCISLLVS +Sequence3 DTIWFI---VISW---IPIAIVYGLARS----SPDCW--------LWIFSVPITLSLLAS + .* :* * . + +Sequence12 GFIFCNFVCIL----------------AKCVSKAFVFYFSLLGLTYLI------------ +Sequence0 LFFLCNILRVL----------------VTQALKATFVLIPLFGIQLFV------------ +Sequence1 MATLVNILRIL----------------LFKGVKAAFMLIPLFGLQMLL------------ +Sequence13 VCFMVHIMIIL----------------VTKGVRGIVVLLPLLGASYFM------------ +Sequence16 FFLFIRIIRILRQKMNCPDIGRKESH-LRRLAKSTLLLIPLFGINYII------------ +Sequence17 FFLFIRIIRILRQKMNCPDIGRKESHQCSRLAKSTLLLIPLFGINYII------------ +Sequence7 FILFLNTVRVL----------------ATKLAKSTLVLVLVFGVHYIV------------ +Sequence5 FILFVNIVRVL----------------ATKLAKSTLVLVLVFGIHYII------------ +Sequence6 FILFVNIVRVL----------------ATKLAKSTQVLVFVFGVHYIV------------ +Sequence9 FLLFLNILRVL----------------VKKLAKSTMVLIPLFGVHYIV------------ +Sequence8 FLLFLNIIRVL----------------WYKLAKSTLVLIPMFGVHAIV------------ +Sequence10 VIFLGSIVWVL----------------ITKAVRATLILFPLLGVTYVV------------ +Sequence11 IFFLSAIIWVL----------------ITKAVKATIILFPLLGVTYVL------------ +Sequence14 FLFLLNIIRVLVVKLRQSKQTEIKRSSFRKAVRATAVLLPLLGITNIISMSKSPLEKSVW +Sequence15 FLFLLNIIRVLVVKLRQSRKSEIEQ--VRKAVRATAVLLPLLGITNIISMSKSPLEKSVW +Sequence4 AFFLVNIVRVL----------------VTKNCKATLILLPLLGLHYVV------------ +Sequence2 LIFLINVLRVI----------------LTIAARAALILIPLFGLQHIL------------ +Sequence3 FIFLINVLRVI----------------VRKAVRATIILVPLFGLQHFL------------ + : : :: .. . . ::* .: + +Sequence12 --FMF----------IYTNVILESFQGFFICLFHCFCNTHMR------------------ +Sequence0 --TLY----------EKFTTFVINSQGFFVALIFCFCNGEVR------------------ +Sequence1 --TIY----------EYFTFIVTNSQGIFVAVIFCYLNGEVI------------------ +Sequence13 --LLY----------RYLNAFLQSTQGFFVAIIYVYMNQEVQ------------------ +Sequence16 --FAFLPDHIQTKGRLVFDLILGSFQSFVVVVLYCFLNGEVQAEIKRKWRRWTLQRFLGA +Sequence17 --FAFLPDHIQTKGRLVFDLILGSFQGFVVVVLYCFLNGEVQAEIKRKWRRWTLQRFLGA +Sequence7 --FVR----------MHCELFFNSFQGFFVSIIYCYCNGEVQ------------------ +Sequence5 --FVR----------MYCELFFNSFQGFFVSIIYCYCNGEVQ------------------ +Sequence6 --FVR----------MYCELFFNSFQGFFVSIIYCYCNGEVQ------------------ +Sequence9 --FVR----------LYFELFFNSFQGFFVSILYCFLNGEVR------------------ +Sequence8 --FIR----------MSFDLFFNSFQGFFVAIIYCFCNGEVQ------------------ +Sequence10 --FIF----------VYFNAILQSLQGLAIAVFYCFLNGEVR------------------ +Sequence11 --FLF----------KYANALLQSFQGLFVAVFYCFLNGEVR------------------ +Sequence14 EFALW----------SYGTHFLTSFQGFFIAFLYCFLNGEVRQVLRKRKRKRRRRK---- +Sequence15 EFALW----------SYGTHFLTSFQGFFIAFLYCFLNGEVRAVVMKSVSTYFSLRNNQQ +Sequence4 --MPY----------QIVSAIFTSFQGLCVAFLFCFCNGEVL------------------ +Sequence2 --IPY----------QYVTVVVVTLQGLCVSCLFCFANQDVH------------------ +Sequence3 --LPY----------QMLSVVLVSLQGFVVSFLFCFANHDVT------------------ + .. . *.: : :. : * : + +Sequence12 ------------------------------------------- +Sequence0 ------------------------------------------- +Sequence1 ------------------------------------------- +Sequence13 ------------------------------------------- +Sequence16 ------------------------------------------- +Sequence17 DTRYQQPSIGSNGNNFSTQITVTIRSSPATRRASECREHLPAI +Sequence7 ------------------------------------------- +Sequence5 ------------------------------------------- +Sequence6 ------------------------------------------- +Sequence9 ------------------------------------------- +Sequence8 ------------------------------------------- +Sequence10 ------------------------------------------- +Sequence11 ------------------------------------------- +Sequence14 ------------------------------------------- +Sequence15 HKQFQHHKQSTSKTTTNDKTNGKQIENQNDDVNDAQWKRTRV- +Sequence4 ------------------------------------------- +Sequence2 ------------------------------------------- +Sequence3 ------------------------------------------- +