X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2FInstallAnywhere%2FJalview.iap_xml;h=3afa211836e906cb16e16b54da8c21af839c492a;hb=f9574ab683df8d0c9dfda092c9005ca773c38e55;hp=48949a0ea661f20c4b4a9169296a54a872179993;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git

diff --git a/utils/InstallAnywhere/Jalview.iap_xml b/utils/InstallAnywhere/Jalview.iap_xml
index 48949a0..3afa211 100755
--- a/utils/InstallAnywhere/Jalview.iap_xml
+++ b/utils/InstallAnywhere/Jalview.iap_xml
@@ -1,8 +1,8 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!-- This script was automatically generated using InstallAnywhere 2014 Professional, Build 4783
      STATUS: Fully Functional LICENSED Edition
- * Jalview - A Sequence Alignment Editor and Viewer (2.9.0b1)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -200,7 +200,7 @@ Can be separated by colons (Mac OS/Unix) or semicolons (Windows)]]></string>
 							<method name="addElement">
 								<object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97fa91cfa6f7">
 									<property name="propertyValue">
-										<string><![CDATA[268400000]]></string>
+										<string><![CDATA[1060000000]]></string>
 									</property>
 									<property name="propertyName">
 										<string><![CDATA[lax.nl.java.option.java.heap.size.max]]></string>
@@ -254,7 +254,7 @@ it will search for ones in this list]]></string>
 							<method name="addElement">
 								<object class="com.zerog.ia.installer.util.LAXPropertyData" objectID="97f991ffa6f7">
 									<property name="propertyValue">
-										<string><![CDATA[33554432]]></string>
+										<string><![CDATA[1000000000]]></string>
 									</property>
 									<property name="propertyName">
 										<string><![CDATA[lax.nl.java.option.java.heap.size.initial]]></string>
@@ -314,13 +314,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[logo.gif]]></string>
 							</property>
 							<property name="smallIconPath">
-								<string><![CDATA[/home/cruisecontrol/jalview/resources/images/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/resources/images/]]></string>
 							</property>
 							<property name="largeIconPath">
-								<string><![CDATA[/home/cruisecontrol/jalview/resources/images/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/resources/images/]]></string>
 							</property>
 							<property name="macOSXIconPath">
-								<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 							</property>
 							<property name="macOSXIconName">
 								<string><![CDATA[mac_logo.icns]]></string>
@@ -367,7 +367,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/dist/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/dist/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -419,7 +419,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -471,7 +471,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -523,7 +523,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -575,7 +575,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -627,7 +627,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -679,7 +679,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -731,7 +731,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -783,7 +783,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -835,7 +835,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -887,7 +887,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -939,7 +939,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -991,7 +991,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1043,7 +1043,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1095,7 +1095,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1147,7 +1147,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1199,7 +1199,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1245,13 +1245,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[Jmol-14.2.14_2015.06.11.jar]]></string>
+								<string><![CDATA[Jmol-14.6.4_2016.10.26.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1263,7 +1263,7 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[Jmol-14.2.14_2015.06.11.jar]]></string>
+								<string><![CDATA[Jmol-14.6.4_2016.10.26.jar]]></string>
 							</property>
 							<property name="fileSize">
 								<long>5417196</long>
@@ -1280,7 +1280,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16838a449">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16839a449">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1297,13 +1297,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
+								<string><![CDATA[vamsas-client.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1315,10 +1315,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[castor-1.1-cycle-xml.jar]]></string>
+								<string><![CDATA[vamsas-client.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>1035998</long>
+								<long>682375</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1332,7 +1332,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b1a16839a449">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="495aeddb8b3d">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1349,13 +1349,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[vamsas-client.jar]]></string>
+								<string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1367,10 +1367,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[vamsas-client.jar]]></string>
+								<string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>682375</long>
+								<long>8300</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1384,7 +1384,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="495aeddb8b3d">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="4996716cba8e">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1401,13 +1401,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
+								<string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1419,10 +1419,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[JGoogleAnalytics_0.3.jar]]></string>
+								<string><![CDATA[jabaws-min-client-2.2.0.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>8300</long>
+								<long>601804</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1436,7 +1436,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="4996716cba8e">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9c">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1453,13 +1453,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+								<string><![CDATA[httpcore-4.0.1.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1471,10 +1471,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[min-jabaws-client-2.1.0.jar]]></string>
+								<string><![CDATA[httpcore-4.0.1.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>601804</long>
+								<long>172888</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1488,7 +1488,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9c">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17519b9c">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1505,13 +1505,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[httpcore-4.0.1.jar]]></string>
+								<string><![CDATA[httpclient-4.0.3.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1523,10 +1523,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[httpcore-4.0.1.jar]]></string>
+								<string><![CDATA[httpclient-4.0.3.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>172888</long>
+								<long>292893</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1540,7 +1540,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17519b9c">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17539b9c">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1557,13 +1557,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[httpclient-4.0.3.jar]]></string>
+								<string><![CDATA[httpmime-4.0.3.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1575,10 +1575,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[httpclient-4.0.3.jar]]></string>
+								<string><![CDATA[httpmime-4.0.3.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>292893</long>
+								<long>25447</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1592,7 +1592,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17539b9c">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9d">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1609,13 +1609,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[httpmime-4.0.3.jar]]></string>
+								<string><![CDATA[apache-mime4j-0.6.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1627,10 +1627,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[httpmime-4.0.3.jar]]></string>
+								<string><![CDATA[apache-mime4j-0.6.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>25447</long>
+								<long>345048</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1644,7 +1644,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="8fbb17529b9d">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a521fb6bc">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1661,13 +1661,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[apache-mime4j-0.6.jar]]></string>
+								<string><![CDATA[miglayout-4.0-swing.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1679,10 +1679,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[apache-mime4j-0.6.jar]]></string>
+								<string><![CDATA[miglayout-4.0-swing.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>345048</long>
+								<long>77291</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1696,7 +1696,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a521fb6bc">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1713,13 +1713,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[miglayout-4.0-swing.jar]]></string>
+								<string><![CDATA[commons-codec-1.3.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1731,10 +1731,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[miglayout-4.0-swing.jar]]></string>
+								<string><![CDATA[commons-codec-1.3.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>77291</long>
+								<long>46725</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1748,7 +1748,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc1">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1765,13 +1765,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[commons-codec-1.3.jar]]></string>
+								<string><![CDATA[jswingreader-0.3.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1783,10 +1783,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[commons-codec-1.3.jar]]></string>
+								<string><![CDATA[jswingreader-0.3.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>46725</long>
+								<long>86618</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1800,7 +1800,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="aa3a5220b6bc">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="df3a5220b6bc">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1817,13 +1817,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jswingreader-0.3.jar]]></string>
+								<string><![CDATA[VARNAv3-93.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1835,10 +1835,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jswingreader-0.3.jar]]></string>
+								<string><![CDATA[VARNAv3-93.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>86618</long>
+								<long>695802</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1852,7 +1852,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="df3a5220b6bc">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1869,13 +1869,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[VARNAv3-93.jar]]></string>
+								<string><![CDATA[groovy-all-2.4.12-indy.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1887,10 +1887,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[VARNAv3-93.jar]]></string>
+								<string><![CDATA[groovy-all-2.4.12-indy.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>695802</long>
+								<long>6149494</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1904,7 +1904,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca391ab9f">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46cffffab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1921,13 +1921,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
+								<string><![CDATA[jfreesvg-2.1.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1939,10 +1939,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[spring-web-3.0.5.RELEASE.jar]]></string>
+								<string><![CDATA[jfreesvg-2.1.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>395587</long>
+								<long>49768</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -1956,7 +1956,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca392ab9f">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -1973,13 +1973,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jdas-1.0.4.jar]]></string>
+								<string><![CDATA[json_simple-1.1.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -1991,10 +1991,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jdas-1.0.4.jar]]></string>
+								<string><![CDATA[json_simple-1.1.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>249906</long>
+								<long>16046</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2008,7 +2008,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f44ca393ab9f">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="841f46efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2025,13 +2025,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[groovy-all-1.8.2.jar]]></string>
+								<string><![CDATA[libquaqua64-8.0.jnilib.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2043,10 +2043,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[groovy-all-1.8.2.jar]]></string>
+								<string><![CDATA[libquaqua64-8.0.jnilib.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>6149494</long>
+								<long>16046</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2060,7 +2060,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="f46c2f42ab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2077,13 +2077,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+								<string><![CDATA[libquaqua-8.0.jnilib.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2095,10 +2095,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[spring-core-3.0.5.RELEASE.jar]]></string>
+								<string><![CDATA[libquaqua-8.0.jnilib.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>382442</long>
+								<long>16046</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2111,8 +2111,61 @@ and any path to a file to save to the file]]></string>
 							</property>
 						</object>
 					</method>
+
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46cffffab93">
+            <object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeef911a">
+              <property name="belongsToUninstallPhase">
+                <boolean>false</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+              <property name="unixPermissions">
+                <string><![CDATA[664]]></string>
+              </property>
+              <property name="sourceName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="overrideUnixPermissions">
+                <boolean>false</boolean>
+              </property>
+              <property name="sourcePath">
+                <string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+              </property>
+              <property name="shouldUninstall">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledCancel">
+                <boolean>true</boolean>
+              </property>
+              <property name="rollbackEnabledError">
+                <boolean>true</boolean>
+              </property>
+              <property name="destinationName">
+                <string><![CDATA[VAqua5-patch.jar]]></string>
+              </property>
+              <property name="fileSize">
+                <long>1370564</long>
+              </property>
+              <property name="macBinary">
+                <boolean>false</boolean>
+              </property>
+              <property name="targetCheckKind">
+                <int>0</int>
+              </property>
+              <property name="ruleExpression">
+                <string><![CDATA[]]></string>
+              </property>
+            </object>
+          </method>
+          <method name="addElement">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2129,13 +2182,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jfreesvg-2.1.jar]]></string>
+								<string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2147,10 +2200,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jfreesvg-2.1.jar]]></string>
+								<string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>49768</long>
+								<long>660179</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2164,7 +2217,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1f46efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="10936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2181,13 +2234,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[json_simple-1.1.jar]]></string>
+								<string><![CDATA[jersey-client-1.19.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2199,10 +2252,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[json_simple-1.1.jar]]></string>
+								<string><![CDATA[jersey-client-1.19.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>16046</long>
+								<long>134021</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2216,7 +2269,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="841f46efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="11936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2233,13 +2286,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[libqaqua64.jnilib]]></string>
+								<string><![CDATA[jersey-core-1.19.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2251,10 +2304,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[libqaqua64.jnilib]]></string>
+								<string><![CDATA[jersey-core-1.19.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>16046</long>
+								<long>436689</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2268,7 +2321,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="9a1f46efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="12936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2285,13 +2338,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[libquaqua.jnilib]]></string>
+								<string><![CDATA[jersey-json-1.19.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2303,10 +2356,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[libquaqua.jnilib]]></string>
+								<string><![CDATA[jersey-json-1.19.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>16046</long>
+								<long>165345</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2320,7 +2373,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="13936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2337,13 +2390,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
+								<string><![CDATA[java-json.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2355,10 +2408,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[quaqua-filechooser-only-8.0.jar]]></string>
+								<string><![CDATA[java-json.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>660179</long>
+								<long>84697</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2372,7 +2425,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="10936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="14936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2389,13 +2442,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jersey-client-1.19.jar]]></string>
+								<string><![CDATA[jsr311-api-1.1.1.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2407,10 +2460,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jersey-client-1.19.jar]]></string>
+								<string><![CDATA[jsr311-api-1.1.1.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>134021</long>
+								<long>46367</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2424,7 +2477,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="11936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="15936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2441,13 +2494,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jersey-core-1.19.jar]]></string>
+								<string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2459,10 +2512,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jersey-core-1.19.jar]]></string>
+								<string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>436689</long>
+								<long>105748</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2476,7 +2529,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="12936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="16936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2493,13 +2546,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jersey-json-1.19.jar]]></string>
+								<string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2511,10 +2564,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jersey-json-1.19.jar]]></string>
+								<string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>165345</long>
+								<long>108132</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2528,7 +2581,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="13936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="17936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2545,13 +2598,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[java-json.jar]]></string>
+								<string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2563,10 +2616,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[java-json.jar]]></string>
+								<string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>84697</long>
+								<long>418917</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2580,7 +2633,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="14936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="18936efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2597,13 +2650,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jsr311-api-1.1.1.jar]]></string>
+								<string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2615,10 +2668,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jsr311-api-1.1.1.jar]]></string>
+								<string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>46367</long>
+								<long>356253</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2632,7 +2685,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="15936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1899e36efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2649,13 +2702,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[jetty-servlet-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2667,10 +2720,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jetty-http-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[jetty-servlet-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>105748</long>
+								<long>356253</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2684,7 +2737,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="16936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1899d6efeefab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2701,13 +2754,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[jetty-security-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2719,10 +2772,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jetty-io-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[jetty-security-9.2.10.v20150310.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>108132</long>
+								<long>356253</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2736,7 +2789,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="17936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2753,13 +2806,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[htsjdk-2.12.0.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2771,10 +2824,10 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jetty-server-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[htsjdk-2.12.0.jar]]></string>
 							</property>
 							<property name="fileSize">
-								<long>418917</long>
+								<long>16046</long>
 							</property>
 							<property name="macBinary">
 								<boolean>false</boolean>
@@ -2788,7 +2841,7 @@ and any path to a file to save to the file]]></string>
 						</object>
 					</method>
 					<method name="addElement">
-						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="18936efeefab93">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfb93">
 							<property name="belongsToUninstallPhase">
 								<boolean>false</boolean>
 							</property>
@@ -2805,13 +2858,13 @@ and any path to a file to save to the file]]></string>
 								<string><![CDATA[664]]></string>
 							</property>
 							<property name="sourceName">
-								<string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[intervalstore-v1.0.jar]]></string>
 							</property>
 							<property name="overrideUnixPermissions">
 								<boolean>false</boolean>
 							</property>
 							<property name="sourcePath">
-								<string><![CDATA[/home/cruisecontrol/jalview/lib/]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
 							</property>
 							<property name="shouldUninstall">
 								<boolean>true</boolean>
@@ -2823,7 +2876,111 @@ and any path to a file to save to the file]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="destinationName">
-								<string><![CDATA[jetty-util-9.2.10.v20150310.jar]]></string>
+								<string><![CDATA[intervalstore-v1.0.jar]]></string>
+							</property>
+							<property name="fileSize">
+								<long>26303</long>
+							</property>
+							<property name="macBinary">
+								<boolean>false</boolean>
+							</property>
+							<property name="targetCheckKind">
+								<int>0</int>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+						</object>
+					</method>
+					<method name="addElement">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b10a3">
+							<property name="belongsToUninstallPhase">
+								<boolean>false</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+							<property name="unixPermissions">
+								<string><![CDATA[664]]></string>
+							</property>
+							<property name="sourceName">
+								<string><![CDATA[biojava-core-4.1.0.jar]]></string>
+							</property>
+							<property name="overrideUnixPermissions">
+								<boolean>false</boolean>
+							</property>
+							<property name="sourcePath">
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+							</property>
+							<property name="shouldUninstall">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="destinationName">
+								<string><![CDATA[biojava-core-4.1.0.jar]]></string>
+							</property>
+							<property name="fileSize">
+								<long>356253</long>
+							</property>
+							<property name="macBinary">
+								<boolean>false</boolean>
+							</property>
+							<property name="targetCheckKind">
+								<int>0</int>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+						</object>
+					</method>
+					<method name="addElement">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="b10a30">
+							<property name="belongsToUninstallPhase">
+								<boolean>false</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+							<property name="unixPermissions">
+								<string><![CDATA[664]]></string>
+							</property>
+							<property name="sourceName">
+								<string><![CDATA[biojava-ontology-4.1.0.jar]]></string>
+							</property>
+							<property name="overrideUnixPermissions">
+								<boolean>false</boolean>
+							</property>
+							<property name="sourcePath">
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+							</property>
+							<property name="shouldUninstall">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="destinationName">
+								<string><![CDATA[biojava-ontology-4.1.0.jar]]></string>
 							</property>
 							<property name="fileSize">
 								<long>356253</long>
@@ -2839,13 +2996,66 @@ and any path to a file to save to the file]]></string>
 							</property>
 						</object>
 					</method>
+
+					<method name="addElement">
+						<object class="com.zerog.ia.installer.actions.InstallZipfile" objectID="1000ddddfab939">
+							<property name="belongsToUninstallPhase">
+								<boolean>false</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+							<property name="unixPermissions">
+								<string><![CDATA[664]]></string>
+							</property>
+							<property name="sourceName">
+								<string><![CDATA[servlet-api-3.1.jar]]></string>
+							</property>
+							<property name="overrideUnixPermissions">
+								<boolean>false</boolean>
+							</property>
+							<property name="sourcePath">
+								<string><![CDATA[/homes/cruisecontrol/jalview/lib/]]></string>
+							</property>
+							<property name="shouldUninstall">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledCancel">
+								<boolean>true</boolean>
+							</property>
+							<property name="rollbackEnabledError">
+								<boolean>true</boolean>
+							</property>
+							<property name="destinationName">
+								<string><![CDATA[servlet-api-3.1.jar]]></string>
+							</property>
+							<property name="fileSize">
+								<long>16046</long>
+							</property>
+							<property name="macBinary">
+								<boolean>false</boolean>
+							</property>
+							<property name="targetCheckKind">
+								<int>0</int>
+							</property>
+							<property name="ruleExpression">
+								<string><![CDATA[]]></string>
+							</property>
+						</object>
+					</method>
 				</object>
 			</property>
 			<property name="rulesFailedMessage">
 				<string><![CDATA[The installer cannot run on your configuration. It will now quit.]]></string>
 			</property>
 			<property name="userSplashPath">
-				<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+				<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 			</property>
 			<property name="userSplashName">
 				<string><![CDATA[jalview.gif]]></string>
@@ -3742,7 +3952,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[OracleJRE8u5_Macosx.vm]]></string>
+												<string><![CDATA[OracleJRE180u92_macosx.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3779,7 +3989,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[SunJRE170_03Win32.vm]]></string>
+												<string><![CDATA[OracleJRE8u92_windows(x86).vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3850,10 +4060,10 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="buildWithVM">
-												<boolean>true</boolean>
+												<boolean>false</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[JRE16_16002HPUX11PA-RISC.vm]]></string>
+												<string><![CDATA[JRE16_16010HPUXPA-RISC.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3890,7 +4100,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
+												<string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -3998,7 +4208,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[ORACLEJRE7u60_linux32.vm]]></string>
+												<string><![CDATA[OracleJRE180u92_Linux32.vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -4069,7 +4279,7 @@ Press "Done" to quit the installer.]]></string>
 												<boolean>true</boolean>
 											</property>
 											<property name="bundledVM">
-												<string><![CDATA[OracleJRE8u5_windows(x64).vm]]></string>
+												<string><![CDATA[OracleJRE180u92_windows(x64).vm]]></string>
 											</property>
 											<property name="withoutVmSearchOption">
 												<short>10</short>
@@ -4138,7 +4348,7 @@ Press "Done" to quit the installer.]]></string>
 								<boolean>true</boolean>
 							</property>
 							<property name="buildOutputLocation">
-								<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
+								<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/Jalview_Build_Output]]></string>
 							</property>
 							<property name="relatedProjectSettings">
 								<object class="com.zerog.ia.installer.RelatedProjectSettings" objectID="97f2363da6ac">
@@ -5166,7 +5376,7 @@ Press "Done" to quit the installer.]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.installer.options.valid.vm.list]]></string>
-						<string><![CDATA[1.7+]]></string>
+						<string><![CDATA[1.8*]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.project.build.last.date]]></string>
@@ -5262,7 +5472,7 @@ Press "Done" to quit the installer.]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.installer.options.platform.macosx.vm.version]]></string>
-						<string><![CDATA[1.7+]]></string>
+						<string><![CDATA[1.8*]]></string>
 					</method>
 					<method name="put">
 						<string><![CDATA[com.zerog.ia.build.platform.java.novm]]></string>
@@ -5302,7 +5512,7 @@ Press "Done" to quit the installer.]]></string>
 						<boolean>true</boolean>
 					</property>
 					<property name="backgroundImagePath">
-						<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+						<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 					</property>
 					<property name="backgroundImageName">
 						<string><![CDATA[align.gif]]></string>
@@ -7126,6 +7336,7 @@ and any path to a file to read from that file]]></string>
 										<object refID="24485f8ca673"/>
 										<object refID="24485f8ba674"/>
 										<object refID="24485f8ca674"/>
+										<object refID="9a1f46efeef911a"/>
 										<object class="com.zerog.ia.installer.actions.CreateShortcut" objectID="3cd8e2ffa672">
 											<property name="belongsToUninstallPhase">
 												<boolean>false</boolean>
@@ -7187,7 +7398,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7228,7 +7439,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7269,7 +7480,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/doc/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/doc/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7288,7 +7499,6 @@ and any path to a file to read from that file]]></string>
 											</property>
 										</object>
 										<object refID="88d4aff3b0c6"/>
-										<object refID="b1a16838a449"/>
 										<object refID="b1a16839a449"/>
 										<object refID="495aeddb8b3d"/>
 										<object refID="4996716cba8e"/>
@@ -7300,13 +7510,15 @@ and any path to a file to read from that file]]></string>
 										<object refID="aa3a5220b6bc"/>
 										<object refID="df3a5220b6bc"/>
 										<object refID="aa3a5220b6bc1"/>
-										<object refID="f44ca391ab9f"/>
-										<object refID="f44ca392ab9f"/>
+
 										<object refID="f44ca393ab9f"/>
-										<object refID="f46c2f42ab93"/>
+
 										<object refID="1f46cffffab93"/>
 										<object refID="1f46efeefab93"/>
 										<object refID="1936efeefab93"/>
+										<object refID="1000ddddfab93"/>
+										<object refID="1000ddddfb93"/>
+										<object refID="1000ddddfab939"/>
 										<object refID="10936efeefab93"/>
 										<object refID="11936efeefab93"/>
 										<object refID="12936efeefab93"/>
@@ -7316,6 +7528,11 @@ and any path to a file to read from that file]]></string>
 										<object refID="16936efeefab93"/>
 										<object refID="17936efeefab93"/>
 										<object refID="18936efeefab93"/>
+										<object refID="b10a3"/>
+										<object refID="b10a30"/>
+										<object refID="1899e36efeefab93"/>
+										<object refID="1899d6efeefab93"/>
+
 										<object class="com.zerog.ia.installer.actions.InstallFile" objectID="f44fc5b2aba1">
 											<property name="belongsToUninstallPhase">
 												<boolean>false</boolean>
@@ -7339,7 +7556,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7380,7 +7597,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7421,7 +7638,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7462,7 +7679,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7503,7 +7720,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7553,7 +7770,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7594,7 +7811,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7635,7 +7852,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7676,7 +7893,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7717,7 +7934,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7758,7 +7975,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7799,7 +8016,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7840,7 +8057,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/lib]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/lib]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7875,6 +8092,7 @@ and any path to a file to read from that file]]></string>
 												<object refID="24485f8ca673"/>
 												<object refID="24485f8ba674"/>
 												<object refID="24485f8ca674"/>
+												<object refID="9a1f46efeef911a"/>
 												<object refID="b1a16838a449"/>
 												<object refID="b1a16839a449"/>
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@@ -7894,6 +8112,8 @@ and any path to a file to read from that file]]></string>
 												<object refID="1f46cffffab93"/>
 												<object refID="1f46efeefab93"/>
 												<object refID="1936efeefab93"/>
+												<object refID="1000ddddfab93"/>
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 												<object refID="10936efeefab93"/>
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@@ -7928,7 +8148,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples/groovy]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples/groovy]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -7969,7 +8189,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/home/cruisecontrol/jalview/examples]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/examples]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>false</boolean>
@@ -8025,7 +8245,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -8066,7 +8286,7 @@ and any path to a file to read from that file]]></string>
 												<boolean>false</boolean>
 											</property>
 											<property name="sourcePath">
-												<string><![CDATA[/opt/homes/cruisecontrol/live/cruisecontrol/checkout/next-release-jalview/]]></string>
+												<string><![CDATA[/homes/cruisecontrol/jalview/]]></string>
 											</property>
 											<property name="shouldUninstall">
 												<boolean>true</boolean>
@@ -8251,7 +8471,7 @@ and any path to a file to read from that file]]></string>
 										<string><![CDATA[]]></string>
 									</property>
 									<property name="imagePath">
-										<string><![CDATA[/home/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
+										<string><![CDATA[/homes/cruisecontrol/jalview/utils/InstallAnywhere/]]></string>
 									</property>
 									<property name="imageName">
 										<string><![CDATA[bartonGroup.gif]]></string>