X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Fcheckstyle%2Fimport-control.xml;h=478966ffd49c170ef3995f912802df572c000a47;hb=9abb0c2e44062a1a4707a4c8312bccff232c6003;hp=946f71cef2ba42e394b99bdcb11662c10d7d3ba7;hpb=f4766a7bbcfae845fc95923b01fa14ff83d589ff;p=jalview.git

diff --git a/utils/checkstyle/import-control.xml b/utils/checkstyle/import-control.xml
index 946f71c..478966f 100644
--- a/utils/checkstyle/import-control.xml
+++ b/utils/checkstyle/import-control.xml
@@ -37,13 +37,39 @@
 		<subpackage name="datamodel">
 	    	<disallow pkg="jalview.gui"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
-			<subpackage name="xdb">
-				<subpackage name="embl">
-			    	<allow pkg="org.exolab.castor"/>
-			    </subpackage>
+			<subpackage name="xdb.embl">
+		    	<allow pkg="org.exolab.castor"/>
 		    </subpackage>
 	    </subpackage>
    		
+		<subpackage name="ext">
+			<subpackage name="ensembl">
+		    	<allow pkg="javax.ws"/>
+		    	<allow pkg="org.json"/>
+			</subpackage>
+			<subpackage name="htsjdk">
+		    	<allow pkg="htsjdk"/>
+			</subpackage>
+			<subpackage name="jmol">
+		    	<allow pkg="MCview"/>
+		    	<allow pkg="org.jmol"/>
+			</subpackage>
+			<subpackage name="paradise">
+		    	<allow pkg="org.apache"/>
+		    	<allow pkg="org.json"/>
+			</subpackage>
+			<subpackage name="rbvi">
+		    	<allow pkg="ext.edu.ucsf"/>
+		    	<allow pkg="javax.servlet"/>
+			</subpackage>
+			<subpackage name="so">
+		    	<allow pkg="org.biojava"/>
+			</subpackage>
+			<subpackage name="varna">
+		    	<allow pkg="fr.orsay"/>
+			</subpackage>
+	    </subpackage>
+   		
 		<subpackage name="fts">
 	    	<allow pkg="javax.swing"/>
 	    	<allow pkg="javax.ws"/>
@@ -68,6 +94,7 @@
 	    	<allow pkg="compbio.metadata" class="jalview.gui.WsJobParameters"/>
 	    	<allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarna"/>
 	    	<allow pkg="fr.orsay.lri.varna" class="jalview.gui.AppVarnaBinding"/>
+	    	<allow pkg="org.stackoverflowusers.file" class="jalview.gui.Desktop"/>
 	    	<allow pkg="uk.ac.vamsas" class="jalview.gui.VamsasApplication"/>
 	    </subpackage>
    		
@@ -90,6 +117,9 @@
 	    	<allow pkg="uk.ac.vamsas"/>
 	    	<allow pkg="fr.orsay.lri.varna"/>
 	    	<allow pkg="MCview"/>
+			<subpackage name="vcf">
+		    	<allow pkg="htsjdk\.*" regex="true"/>
+			</subpackage>	    
 		</subpackage>	    
 		   		
 		<subpackage name="javascript">
@@ -101,7 +131,7 @@
 		</subpackage>
 
 		<subpackage name="schemes">
-			<allow pkg="org.exolab.castor"/>
+			<allow pkg="org.exolab.castor" class="jalview.schemes.ColourSchemeLoader"/>
 		</subpackage>
 
 		<subpackage name="structure">