X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Fgetdown%2Fbin%2Fjalview.sh;h=9e3a8c72c6be702a61bda802a9bd8f818c139ba7;hb=570267624a5d5e0192895edbd4c25f25f3ea15f0;hp=112c3e64f2ad7e94974ca076d64775a97b8dc704;hpb=9e7c315c6ac828989a2d7f49dcb7e451f38df9ff;p=jalview.git

diff --git a/utils/getdown/bin/jalview.sh b/utils/getdown/bin/jalview.sh
index 112c3e6..9e3a8c7 100755
--- a/utils/getdown/bin/jalview.sh
+++ b/utils/getdown/bin/jalview.sh
@@ -65,7 +65,8 @@ CLASSPATH=""
 declare -a JARPATHS=()
 if [ -e "${GETDOWNTXT}" ]; then
   # always check grep and sed regexes on macos -- they're not the same
-  for JAR in $(grep -e '^code\s*=\s*' "${GETDOWNTXT}" | sed -e 's/^code\s*=\s*//;'); do
+for JAR in $(grep -e '^code[[:space:]]*=[[:space:]]*' "${GETDOWNTXT}" | while read -r line; do echo $line | sed -E -e 's/code[[:space:]]*=[[:space:]]*//;'; done);
+  do
     [ -n "${CLASSPATH}" ] && CLASSPATH="${CLASSPATH}:"
     CLASSPATH="${CLASSPATH}${APPDIR}/${JAR}"
     JARPATHS=( "${JARPATHS[@]}" "${APPDIR}/${JAR}" )
@@ -77,10 +78,9 @@ fi
 
 # WINDOWS ONLY (Cygwin or WSL)
 # change paths for Cygwin or Windows Subsystem for Linux (WSL)
-if [ "${ISMACOS}" != 1 ]; then # macos doesn't like uname -o, best to avoid
+if [ "${ISMACOS}" != 1 ]; then # older macos doesn't like uname -o, best to avoid
   if [ "$(uname -o)" = "Cygwin" ]; then
   # CYGWIN
-    echo "When using relative paths in args within Cygwin, please start with './' or '../'" >&2
     CLASSPATH=$(cygpath -pw "${CLASSPATH}")
     # now for some arg paths fun. only translating paths starting with './', '../', '/' or '~'
     ARGS=()
@@ -91,9 +91,8 @@ if [ "${ISMACOS}" != 1 ]; then # macos doesn't like uname -o, best to avoid
         ARGS=( "${ARGS[@]}" "${ARG}" )
       fi
     done
-  elif uname -r | grep Microsoft >/dev/null; then
+  elif uname -r | grep -i microsoft | grep -i wsl >/dev/null; then
   # WSL
-    echo "When using relative paths in args within WSL, please start with './' or '../'" >&2
     CLASSPATH=""
     for JARPATH in "${JARPATHS[@]}"; do
       [ -n "${CLASSPATH}" ] && CLASSPATH="${CLASSPATH};"
@@ -115,18 +114,21 @@ if [ "${ISMACOS}" != 1 ]; then # macos doesn't like uname -o, best to avoid
   fi
 fi
 
+# get console width -- three ways to try, just in case
+if command -v tput 2>&1 >/dev/null; then
+  COLUMNS=$(tput cols) 2>/dev/null
+elif command -v stty 2>&1 >/dev/null; then
+  COLUMNS=$(stty size | cut -d" " -f2) 2>/dev/null
+elif command -v resize 2>&1 >/dev/null; then
+  COLUMNS=$(resize -u | grep COLUMNS= | sed -e 's/.*=//;s/;//') 2>/dev/null
+fi
+JVMARGS=( "${JVMARGS[@]}" "-DCONSOLEWIDTH=${COLUMNS}" )
+JVMARGS=( "${JVMARGS[@]}" "-Dgetdownappdir=${APPDIR}" )
+
 # Is there a bundled Java?  If not just try one in the PATH (do need .exe in WSL)
 if [ \! -e "${JAVA}" ]; then
   JAVA=$SYSJAVA
   echo "Cannot find bundled java, using system ${JAVA} and hoping for the best!" >&2
 fi
 
-# check to see if $1 is set and is not start of other cli args
-OPEN=""
-if [ -n "${ARG1}" -a "${ARG1}" = "${ARG1#-}" -a "${ARG1}" != "open" ]; then
- # first argument exists and does not start with a "-" and is not "open"
- OPEN="-open"
-fi
-
-# don't quote $OPEN (don't want it accidentally mistaken as an empty string arg!)
-"${JAVA}" "${JVMARGS[@]}" -cp "${CLASSPATH}" jalview.bin.Launcher ${OPEN} "${ARGS[@]}"
+"${JAVA}" "${JVMARGS[@]}" -cp "${CLASSPATH}" jalview.bin.Launcher "${ARGS[@]}"