X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Finstall4j%2Ffile_associations_auto-install4j8.xml;h=b9950788dceee55313408059fe5786f67914b0bb;hb=0ac3a6e702701f6cd46f830cfe4b0a68b71958ed;hp=ab44bb5cf0d21a0242157f93b02b2b21a3131876;hpb=6f88432059289564bc5349f16123b25021796af0;p=jalview.git
diff --git a/utils/install4j/file_associations_auto-install4j8.xml b/utils/install4j/file_associations_auto-install4j8.xml
index ab44bb5..b995078 100644
--- a/utils/install4j/file_associations_auto-install4j8.xml
+++ b/utils/install4j/file_associations_auto-install4j8.xml
@@ -1,682 +1,1125 @@
-
-
- Jalview File
- jvp
- 737
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- Jalview Version Locator File
- jvl
- 737
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- AMSA File
- amsa
- 737
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-
-
-
-
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- Jalview Annotations File
- annotations
- 737
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- Jalview Annotations File
- jvannotations
- 737
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- BioJSON File
- biojson
- 737
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- BLC File
- BLC
- 737
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- BLC File
- blc
- 737
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- Clustal File
- aln
- 737
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- Fasta File
- fa
- 737
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-
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- Fasta File
- fasta
- 737
-
-
-
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-
-
-
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- Jalview Features File
- features
- 737
-
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- Jalview Features File
- jvfeatures
- 737
-
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- Generic Features Format v2 File
- gff2
- 737
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- Generic Features Format v3 File
- gff3
- 737
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- JnetFile File
- concise
- 737
-
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- JnetFile File
- jnet
- 737
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- mmCIF File
- cif
- 737
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- mmCIF File
- mcif
- 737
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- mmCIF File
- mmcif
- 737
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- MSF File
- msf
- 737
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- PDB File
- pdb
- 737
-
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- PDB File
- ent
- 737
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- PFAM File
- pfam
- 737
-
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- PHYLIP File
- phy
- 737
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- PileUp File
- pileup
- 737
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- PIR File
- pir
- 737
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- RNAML File
- rnaml
- 737
-
-
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- Substitution Matrix File
- mat
- 737
-
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- Stockholm File
- sto
- 737
-
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- Stockholm File
- stk
- 737
-
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+
+
+
+ Jalview (.jvp)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Jalview File
+ jvp
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview+xml+zip
+
+
+
+
+
+
+
+
+
+
+ Jalview Launch (.jvl)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Jalview Launch File
+ jvl
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview-jvl+text
+
+
+
+
+
+
+
+
+
+
+ CIF (.cif)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ CIF File
+ cif
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ chemical/x-cif
+
+
+
+
+
+
+
+
+
+
+ mmCIF (.mcif, .mmcif)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ mmCIF File
+ mcif,mmcif
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ chemical/x-mmcif
+
+
+
+
+
+
+
+
+
+
+ PDB (.ent, .pdb)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PDB File
+ ent,pdb
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ chemical/x-pdb
+
+
+
+
+
+
+
+
+
+
+ AMSA (.amsa)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ AMSA File
+ amsa
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-amsa+txt
+
+
+
+
+
+
+
+
+
+
+ Jalview Annotations (.annotations, .jvannotations)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Jalview Annotations File
+ annotations,jvannotations
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview-annotations+text
+
+
+
+
+
+
+
+
+
+
+ BioJSON (.biojson)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ BioJSON File
+ biojson
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview-biojson+json
+
+
+
+
+
+
+
+
+
+
+ BLC (.blc)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ BLC File
+ blc
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-blc+txt
+
+
+
+
+
+
+
+
+
+
+ Clustal (.aln)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Clustal File
+ aln
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-clustal+txt
+
+
+
+
+
+
+
+
+
+
+ ENA Flatfile (.txt)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ ENA Flatfile File
+ txt
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-embl+txt
+
+
+
+
+
+
+
+
+
+
+ Fasta (.fa, .fasta)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Fasta File
+ fa,fasta
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-fasta+txt
+
+
+
+
+
+
+
+
+
+
+ Jalview Features (.features, .jvfeatures)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Jalview Features File
+ features,jvfeatures
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview-features+text
+
+
+
+
+
+
+
+
+
+
+ GenBank Flatfile (.gb, .gbk)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ GenBank Flatfile File
+ gb,gbk
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-genbank+txt
+
+
+
+
+
+
+
+
+
+
+ Generic Features Format v2 (.gff2)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Generic Features Format v2 File
+ gff2
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-gff2+txt
+
+
+
+
+
+
+
+
+
+
+ Generic Features Format v3 (.gff3)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Generic Features Format v3 File
+ gff3
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-gff3+txt
+
+
+
+
+
+
+
+
+
+
+ JnetFile (.concise, .jnet)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ JnetFile File
+ concise,jnet
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview-jnet+text
+
+
+
+
+
+
+
+
+
+
+ MSF (.msf)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ MSF File
+ msf
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-msf+txt
+
+
+
+
+
+
+
+
+
+
+ PFAM (.pfam)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PFAM File
+ pfam
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-pfam+txt
+
+
+
+
+
+
+
+
+
+
+ PHYLIP (.phy)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PHYLIP File
+ phy
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-phylip+txt
+
+
+
+
+
+
+
+
+
+
+ PileUp (.pileup)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PileUp File
+ pileup
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-pileup+txt
+
+
+
+
+
+
+
+
+
+
+ PIR (.pir)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ PIR File
+ pir
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-pir+txt
+
+
+
+
+
+
+
+
+
+
+ RNAML (.rnaml)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ RNAML File
+ rnaml
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/rnaml+xml
+
+
+
+
+
+
+
+
+
+
+ Substitution Matrix (.mat)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Substitution Matrix File
+ mat
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-jalview-scorematrix+text
+
+
+
+
+
+
+
+
+
+
+ Stockholm (.stk, .sto)
+ Creating file associations...
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Stockholm File
+ stk,sto
+ JALVIEW
+
+
+
+
+
+
+
+
+
+
+ application/x-stockholm+txt
+
+
+
+
+
+