X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Finstall4j%2Ffile_associations_auto-install4j8.xml;h=b9950788dceee55313408059fe5786f67914b0bb;hb=a2cfb59f6bdfeec1fc4484af8ed473b69426e072;hp=52438d1d426a325b5993857a2a05eddc6000abfe;hpb=8ee4a20c367cb4fcda616611646710593dc98b60;p=jalview.git

diff --git a/utils/install4j/file_associations_auto-install4j8.xml b/utils/install4j/file_associations_auto-install4j8.xml
index 52438d1..b995078 100644
--- a/utils/install4j/file_associations_auto-install4j8.xml
+++ b/utils/install4j/file_associations_auto-install4j8.xml
@@ -1,4 +1,5 @@
-                  <action id="10000" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Jalview (.jvp) BEGIN -->
+                  <action name="Jalview (.jvp) message" id="10000" customizedId="Jalview-jvp-10000-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Jalview (.jvp)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -6,25 +7,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10001" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Jalview (.jvp) progress bar 0" id="10001" customizedId="Jalview-jvp-10001-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="3" />
+                      <property name="percentValue" type="int" value="0" />
                     </serializedBean>
                   </action>
 
-                  <action id="10002" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvp file association">
+                  <action name="Jalview (.jvp) file association" id="10002" customizedId="Jalview-jvp-10002-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvp file association">
                     <serializedBean>
                       <property name="description" type="string">Jalview File</property>
                       <property name="extension" type="string">jvp</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview+xml+zip</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -39,8 +41,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10003" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Jalview Launch (.jvl) BEGIN -->
+                  <action name="Jalview Launch (.jvl) message" id="10003" customizedId="Jalview Launch-jvl-10003-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Jalview Launch (.jvl)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -48,74 +52,78 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10004" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Jalview Launch (.jvl) progress bar 4" id="10004" customizedId="Jalview Launch-jvl-10004-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="6" />
+                      <property name="percentValue" type="int" value="4" />
                     </serializedBean>
                   </action>
 
-                  <action id="10005" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvl file association">
+                  <action name="Jalview Launch (.jvl) file association" id="10005" customizedId="Jalview Launch-jvl-10005-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvl file association">
                     <serializedBean>
                       <property name="description" type="string">Jalview Launch File</property>
                       <property name="extension" type="string">jvl</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-Launch.icns</string>
+                          <string>jvl_file.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jvl+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-Launch.png</string>
+                          <string>jvl_file.png</string>
                         </object>
                       </property>
                       <property name="unixMimeType" type="string">application/x-jalview-jvl+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-Launch.ico</string>
+                          <string>jvl_file.ico</string>
                         </object>
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10006" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- CIF (.cif) BEGIN -->
+                  <action name="CIF (.cif) message" id="10006" customizedId="CIF-cif-10006-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">AMSA (.amsa)</property>
+                      <property name="detailMessage" type="string">CIF (.cif)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10007" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="CIF (.cif) progress bar 8" id="10007" customizedId="CIF-cif-10007-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="10" />
+                      <property name="percentValue" type="int" value="8" />
                     </serializedBean>
                   </action>
 
-                  <action id="10008" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .amsa file association">
+                  <action name="CIF (.cif) file association" id="10008" customizedId="CIF-cif-10008-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .cif file association">
                     <serializedBean>
-                      <property name="description" type="string">AMSA File</property>
-                      <property name="extension" type="string">amsa</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">CIF File</property>
+                      <property name="extension" type="string">cif</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-amsa+txt</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-amsa+txt</property>
+                      <property name="unixMimeType" type="string">chemical/x-cif</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -123,41 +131,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10009" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- mmCIF (.mcif, .mmcif) BEGIN -->
+                  <action name="mmCIF (.mcif, .mmcif) message" id="10009" customizedId="mmCIF-mcif,mmcif-10009-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Jalview Annotations (.annotations)</property>
+                      <property name="detailMessage" type="string">mmCIF (.mcif, .mmcif)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10010" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="mmCIF (.mcif, .mmcif) progress bar 12" id="10010" customizedId="mmCIF-mcif,mmcif-10010-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="13" />
+                      <property name="percentValue" type="int" value="12" />
                     </serializedBean>
                   </action>
 
-                  <action id="10011" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .annotations file association">
+                  <action name="mmCIF (.mcif, .mmcif) file association" id="10011" customizedId="mmCIF-mcif,mmcif-10011-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mcif,mmcif file association">
                     <serializedBean>
-                      <property name="description" type="string">Jalview Annotations File</property>
-                      <property name="extension" type="string">annotations</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">mmCIF File</property>
+                      <property name="extension" type="string">mcif,mmcif</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-annotations+text</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
+                      <property name="unixMimeType" type="string">chemical/x-mmcif</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -165,41 +176,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10012" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- PDB (.ent, .pdb) BEGIN -->
+                  <action name="PDB (.ent, .pdb) message" id="10012" customizedId="PDB-ent,pdb-10012-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Jalview Annotations (.jvannotations)</property>
+                      <property name="detailMessage" type="string">PDB (.ent, .pdb)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10013" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="PDB (.ent, .pdb) progress bar 16" id="10013" customizedId="PDB-ent,pdb-10013-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="percentValue" type="int" value="16" />
                     </serializedBean>
                   </action>
 
-                  <action id="10014" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvannotations file association">
+                  <action name="PDB (.ent, .pdb) file association" id="10014" customizedId="PDB-ent,pdb-10014-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .ent,pdb file association">
                     <serializedBean>
-                      <property name="description" type="string">Jalview Annotations File</property>
-                      <property name="extension" type="string">jvannotations</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">PDB File</property>
+                      <property name="extension" type="string">ent,pdb</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-annotations+text</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
+                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="VIEWER" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="false" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
+                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -207,41 +221,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10015" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- AMSA (.amsa) BEGIN -->
+                  <action name="AMSA (.amsa) message" id="10015" customizedId="AMSA-amsa-10015-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">BioJSON (.biojson)</property>
+                      <property name="detailMessage" type="string">AMSA (.amsa)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10016" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="AMSA (.amsa) progress bar 20" id="10016" customizedId="AMSA-amsa-10016-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="percentValue" type="int" value="20" />
                     </serializedBean>
                   </action>
 
-                  <action id="10017" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .biojson file association">
+                  <action name="AMSA (.amsa) file association" id="10017" customizedId="AMSA-amsa-10017-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .amsa file association">
                     <serializedBean>
-                      <property name="description" type="string">BioJSON File</property>
-                      <property name="extension" type="string">biojson</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">AMSA File</property>
+                      <property name="extension" type="string">amsa</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-biojson+json</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-biojson+json</property>
+                      <property name="unixMimeType" type="string">application/x-amsa+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -249,83 +266,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10018" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Jalview Annotations (.annotations, .jvannotations) BEGIN -->
+                  <action name="Jalview Annotations (.annotations, .jvannotations) message" id="10018" customizedId="Jalview Annotations-annotations,jvannotations-10018-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">BLC (.blc)</property>
+                      <property name="detailMessage" type="string">Jalview Annotations (.annotations, .jvannotations)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10019" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="23" />
-                    </serializedBean>
-                  </action>
 
-                  <action id="10020" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .blc file association">
+                  <action name="Jalview Annotations (.annotations, .jvannotations) progress bar 24" id="10019" customizedId="Jalview Annotations-annotations,jvannotations-10019-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="description" type="string">BLC File</property>
-                      <property name="extension" type="string">blc</property>
-                      <property name="launcherId" type="string">737</property>
-                      <property name="macIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.icns</string>
-                        </object>
-                      </property>
-                      <!--<property name="macMimeType" type="string">application/x-blc+txt</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                      <property name="restartFinder" type="boolean" value="true" />
-                      <property name="unix" type="boolean" value="true" />
-                      <property name="unixIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.png</string>
-                        </object>
-                      </property>
-                      <property name="unixMimeType" type="string">application/x-blc+txt</property>
-                      <property name="windowsIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.ico</string>
-                        </object>
-                      </property>
+                      <property name="percentValue" type="int" value="24" />
                     </serializedBean>
                   </action>
 
-                  <action id="10021" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Jalview Annotations (.annotations, .jvannotations) file association" id="10020" customizedId="Jalview Annotations-annotations,jvannotations-10020-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .annotations,jvannotations file association">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Clustal (.aln)</property>
-                      <property name="statusMessage" type="string">Creating file associations...</property>
-                      <property name="useDetail" type="boolean" value="true" />
-                      <property name="useStatus" type="boolean" value="true" />
-                    </serializedBean>
-                  </action>
-                  <action id="10022" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="26" />
-                    </serializedBean>
-                  </action>
-
-                  <action id="10023" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .aln file association">
-                    <serializedBean>
-                      <property name="description" type="string">Clustal File</property>
-                      <property name="extension" type="string">aln</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">Jalview Annotations File</property>
+                      <property name="extension" type="string">annotations,jvannotations</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-clustal+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-clustal+txt</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-annotations+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -333,41 +311,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10024" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- BioJSON (.biojson) BEGIN -->
+                  <action name="BioJSON (.biojson) message" id="10021" customizedId="BioJSON-biojson-10021-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Fasta (.fa)</property>
+                      <property name="detailMessage" type="string">BioJSON (.biojson)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10025" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="BioJSON (.biojson) progress bar 28" id="10022" customizedId="BioJSON-biojson-10022-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="30" />
+                      <property name="percentValue" type="int" value="28" />
                     </serializedBean>
                   </action>
 
-                  <action id="10026" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fa file association">
+                  <action name="BioJSON (.biojson) file association" id="10023" customizedId="BioJSON-biojson-10023-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .biojson file association">
                     <serializedBean>
-                      <property name="description" type="string">Fasta File</property>
-                      <property name="extension" type="string">fa</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">BioJSON File</property>
+                      <property name="extension" type="string">biojson</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-fasta+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-biojson+json</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -375,41 +356,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10027" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- BLC (.blc) BEGIN -->
+                  <action name="BLC (.blc) message" id="10024" customizedId="BLC-blc-10024-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Fasta (.fasta)</property>
+                      <property name="detailMessage" type="string">BLC (.blc)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10028" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="BLC (.blc) progress bar 32" id="10025" customizedId="BLC-blc-10025-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="33" />
+                      <property name="percentValue" type="int" value="32" />
                     </serializedBean>
                   </action>
 
-                  <action id="10029" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fasta file association">
+                  <action name="BLC (.blc) file association" id="10026" customizedId="BLC-blc-10026-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .blc file association">
                     <serializedBean>
-                      <property name="description" type="string">Fasta File</property>
-                      <property name="extension" type="string">fasta</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">BLC File</property>
+                      <property name="extension" type="string">blc</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-fasta+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
+                      <property name="unixMimeType" type="string">application/x-blc+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -417,41 +401,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10030" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Clustal (.aln) BEGIN -->
+                  <action name="Clustal (.aln) message" id="10027" customizedId="Clustal-aln-10027-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Jalview Features (.features)</property>
+                      <property name="detailMessage" type="string">Clustal (.aln)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10031" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Clustal (.aln) progress bar 36" id="10028" customizedId="Clustal-aln-10028-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="percentValue" type="int" value="36" />
                     </serializedBean>
                   </action>
 
-                  <action id="10032" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .features file association">
+                  <action name="Clustal (.aln) file association" id="10029" customizedId="Clustal-aln-10029-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .aln file association">
                     <serializedBean>
-                      <property name="description" type="string">Jalview Features File</property>
-                      <property name="extension" type="string">features</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">Clustal File</property>
+                      <property name="extension" type="string">aln</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-features+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
+                      <property name="unixMimeType" type="string">application/x-clustal+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -459,41 +446,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10033" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- ENA Flatfile (.txt) BEGIN -->
+                  <action name="ENA Flatfile (.txt) message" id="10030" customizedId="ENA Flatfile-txt-10030-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Jalview Features (.jvfeatures)</property>
+                      <property name="detailMessage" type="string">ENA Flatfile (.txt)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10034" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="ENA Flatfile (.txt) progress bar 40" id="10031" customizedId="ENA Flatfile-txt-10031-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="percentValue" type="int" value="40" />
                     </serializedBean>
                   </action>
 
-                  <action id="10035" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jvfeatures file association">
+                  <action name="ENA Flatfile (.txt) file association" id="10032" customizedId="ENA Flatfile-txt-10032-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .txt file association">
                     <serializedBean>
-                      <property name="description" type="string">Jalview Features File</property>
-                      <property name="extension" type="string">jvfeatures</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">ENA Flatfile File</property>
+                      <property name="extension" type="string">txt</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-features+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
+                      <property name="unixMimeType" type="string">application/x-embl+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -501,83 +491,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10036" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Fasta (.fa, .fasta) BEGIN -->
+                  <action name="Fasta (.fa, .fasta) message" id="10033" customizedId="Fasta-fa,fasta-10033-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Generic Features Format v2 (.gff2)</property>
+                      <property name="detailMessage" type="string">Fasta (.fa, .fasta)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10037" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="43" />
-                    </serializedBean>
-                  </action>
 
-                  <action id="10038" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff2 file association">
+                  <action name="Fasta (.fa, .fasta) progress bar 44" id="10034" customizedId="Fasta-fa,fasta-10034-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="description" type="string">Generic Features Format v2 File</property>
-                      <property name="extension" type="string">gff2</property>
-                      <property name="launcherId" type="string">737</property>
-                      <property name="macIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.icns</string>
-                        </object>
-                      </property>
-                      <!--<property name="macMimeType" type="string">application/x-gff2+txt</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                      <property name="restartFinder" type="boolean" value="true" />
-                      <property name="unix" type="boolean" value="true" />
-                      <property name="unixIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.png</string>
-                        </object>
-                      </property>
-                      <property name="unixMimeType" type="string">application/x-gff2+txt</property>
-                      <property name="windowsIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.ico</string>
-                        </object>
-                      </property>
-                    </serializedBean>
-                  </action>
-
-                  <action id="10039" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="detailMessage" type="string">Generic Features Format v3 (.gff3)</property>
-                      <property name="statusMessage" type="string">Creating file associations...</property>
-                      <property name="useDetail" type="boolean" value="true" />
-                      <property name="useStatus" type="boolean" value="true" />
-                    </serializedBean>
-                  </action>
-                  <action id="10040" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="46" />
+                      <property name="percentValue" type="int" value="44" />
                     </serializedBean>
                   </action>
 
-                  <action id="10041" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff3 file association">
+                  <action name="Fasta (.fa, .fasta) file association" id="10035" customizedId="Fasta-fa,fasta-10035-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .fa,fasta file association">
                     <serializedBean>
-                      <property name="description" type="string">Generic Features Format v3 File</property>
-                      <property name="extension" type="string">gff3</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">Fasta File</property>
+                      <property name="extension" type="string">fa,fasta</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-gff3+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-gff3+txt</property>
+                      <property name="unixMimeType" type="string">application/x-fasta+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -585,41 +536,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10042" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Jalview Features (.features, .jvfeatures) BEGIN -->
+                  <action name="Jalview Features (.features, .jvfeatures) message" id="10036" customizedId="Jalview Features-features,jvfeatures-10036-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">JnetFile (.concise)</property>
+                      <property name="detailMessage" type="string">Jalview Features (.features, .jvfeatures)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10043" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Jalview Features (.features, .jvfeatures) progress bar 48" id="10037" customizedId="Jalview Features-features,jvfeatures-10037-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="50" />
+                      <property name="percentValue" type="int" value="48" />
                     </serializedBean>
                   </action>
 
-                  <action id="10044" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .concise file association">
+                  <action name="Jalview Features (.features, .jvfeatures) file association" id="10038" customizedId="Jalview Features-features,jvfeatures-10038-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .features,jvfeatures file association">
                     <serializedBean>
-                      <property name="description" type="string">JnetFile File</property>
-                      <property name="extension" type="string">concise</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">Jalview Features File</property>
+                      <property name="extension" type="string">features,jvfeatures</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jnet+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-features+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -627,41 +581,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10045" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- GenBank Flatfile (.gb, .gbk) BEGIN -->
+                  <action name="GenBank Flatfile (.gb, .gbk) message" id="10039" customizedId="GenBank Flatfile-gb,gbk-10039-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">JnetFile (.jnet)</property>
+                      <property name="detailMessage" type="string">GenBank Flatfile (.gb, .gbk)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10046" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="GenBank Flatfile (.gb, .gbk) progress bar 52" id="10040" customizedId="GenBank Flatfile-gb,gbk-10040-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="53" />
+                      <property name="percentValue" type="int" value="52" />
                     </serializedBean>
                   </action>
 
-                  <action id="10047" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .jnet file association">
+                  <action name="GenBank Flatfile (.gb, .gbk) file association" id="10041" customizedId="GenBank Flatfile-gb,gbk-10041-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gb,gbk file association">
                     <serializedBean>
-                      <property name="description" type="string">JnetFile File</property>
-                      <property name="extension" type="string">jnet</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">GenBank Flatfile File</property>
+                      <property name="extension" type="string">gb,gbk</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-jnet+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
+                      <property name="unixMimeType" type="string">application/x-genbank+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -669,41 +626,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10048" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Generic Features Format v2 (.gff2) BEGIN -->
+                  <action name="Generic Features Format v2 (.gff2) message" id="10042" customizedId="Generic Features Format v2-gff2-10042-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">mmCIF (.cif)</property>
+                      <property name="detailMessage" type="string">Generic Features Format v2 (.gff2)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10049" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Generic Features Format v2 (.gff2) progress bar 56" id="10043" customizedId="Generic Features Format v2-gff2-10043-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="percentValue" type="int" value="56" />
                     </serializedBean>
                   </action>
 
-                  <action id="10050" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .cif file association">
+                  <action name="Generic Features Format v2 (.gff2) file association" id="10044" customizedId="Generic Features Format v2-gff2-10044-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff2 file association">
                     <serializedBean>
-                      <property name="description" type="string">mmCIF File</property>
-                      <property name="extension" type="string">cif</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">Generic Features Format v2 File</property>
+                      <property name="extension" type="string">gff2</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-cif</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">chemical/x-cif</property>
+                      <property name="unixMimeType" type="string">application/x-gff2+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -711,41 +671,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10051" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Generic Features Format v3 (.gff3) BEGIN -->
+                  <action name="Generic Features Format v3 (.gff3) message" id="10045" customizedId="Generic Features Format v3-gff3-10045-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">mmCIF (.mcif)</property>
+                      <property name="detailMessage" type="string">Generic Features Format v3 (.gff3)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10052" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Generic Features Format v3 (.gff3) progress bar 60" id="10046" customizedId="Generic Features Format v3-gff3-10046-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="percentValue" type="int" value="60" />
                     </serializedBean>
                   </action>
 
-                  <action id="10053" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mcif file association">
+                  <action name="Generic Features Format v3 (.gff3) file association" id="10047" customizedId="Generic Features Format v3-gff3-10047-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .gff3 file association">
                     <serializedBean>
-                      <property name="description" type="string">mmCIF File</property>
-                      <property name="extension" type="string">mcif</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">Generic Features Format v3 File</property>
+                      <property name="extension" type="string">gff3</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-mcif</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">chemical/x-mcif</property>
+                      <property name="unixMimeType" type="string">application/x-gff3+txt</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -753,41 +716,44 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10054" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- JnetFile (.concise, .jnet) BEGIN -->
+                  <action name="JnetFile (.concise, .jnet) message" id="10048" customizedId="JnetFile-concise,jnet-10048-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">mmCIF (.mmcif)</property>
+                      <property name="detailMessage" type="string">JnetFile (.concise, .jnet)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10055" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="JnetFile (.concise, .jnet) progress bar 64" id="10049" customizedId="JnetFile-concise,jnet-10049-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="63" />
+                      <property name="percentValue" type="int" value="64" />
                     </serializedBean>
                   </action>
 
-                  <action id="10056" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mmcif file association">
+                  <action name="JnetFile (.concise, .jnet) file association" id="10050" customizedId="JnetFile-concise,jnet-10050-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .concise,jnet file association">
                     <serializedBean>
-                      <property name="description" type="string">mmCIF File</property>
-                      <property name="extension" type="string">mmcif</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="description" type="string">JnetFile File</property>
+                      <property name="extension" type="string">concise,jnet</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-mcif</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.png</string>
                         </object>
                       </property>
-                      <property name="unixMimeType" type="string">chemical/x-mcif</property>
+                      <property name="unixMimeType" type="string">application/x-jalview-jnet+text</property>
                       <property name="windowsIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.ico</string>
@@ -795,8 +761,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10057" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- MSF (.msf) BEGIN -->
+                  <action name="MSF (.msf) message" id="10051" customizedId="MSF-msf-10051-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">MSF (.msf)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -804,25 +772,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10058" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="MSF (.msf) progress bar 68" id="10052" customizedId="MSF-msf-10052-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="66" />
+                      <property name="percentValue" type="int" value="68" />
                     </serializedBean>
                   </action>
 
-                  <action id="10059" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .msf file association">
+                  <action name="MSF (.msf) file association" id="10053" customizedId="MSF-msf-10053-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .msf file association">
                     <serializedBean>
                       <property name="description" type="string">MSF File</property>
                       <property name="extension" type="string">msf</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-msf+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -837,92 +806,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10060" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="detailMessage" type="string">PDB (.pdb)</property>
-                      <property name="statusMessage" type="string">Creating file associations...</property>
-                      <property name="useDetail" type="boolean" value="true" />
-                      <property name="useStatus" type="boolean" value="true" />
-                    </serializedBean>
-                  </action>
-                  <action id="10061" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="70" />
-                    </serializedBean>
-                  </action>
-
-                  <action id="10062" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pdb file association">
-                    <serializedBean>
-                      <property name="description" type="string">PDB File</property>
-                      <property name="extension" type="string">pdb</property>
-                      <property name="launcherId" type="string">737</property>
-                      <property name="macIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.icns</string>
-                        </object>
-                      </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-pdb</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                      <property name="restartFinder" type="boolean" value="true" />
-                      <property name="unix" type="boolean" value="true" />
-                      <property name="unixIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.png</string>
-                        </object>
-                      </property>
-                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
-                      <property name="windowsIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.ico</string>
-                        </object>
-                      </property>
-                    </serializedBean>
-                  </action>
-
-                  <action id="10063" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="detailMessage" type="string">PDB (.ent)</property>
-                      <property name="statusMessage" type="string">Creating file associations...</property>
-                      <property name="useDetail" type="boolean" value="true" />
-                      <property name="useStatus" type="boolean" value="true" />
-                    </serializedBean>
-                  </action>
-                  <action id="10064" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="73" />
-                    </serializedBean>
-                  </action>
-
-                  <action id="10065" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .ent file association">
-                    <serializedBean>
-                      <property name="description" type="string">PDB File</property>
-                      <property name="extension" type="string">ent</property>
-                      <property name="launcherId" type="string">737</property>
-                      <property name="macIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.icns</string>
-                        </object>
-                      </property>
-                      <!--<property name="macMimeType" type="string">chemical/x-pdb</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                      <property name="restartFinder" type="boolean" value="true" />
-                      <property name="unix" type="boolean" value="true" />
-                      <property name="unixIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.png</string>
-                        </object>
-                      </property>
-                      <property name="unixMimeType" type="string">chemical/x-pdb</property>
-                      <property name="windowsIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.ico</string>
-                        </object>
-                      </property>
-                    </serializedBean>
-                  </action>
-
-                  <action id="10066" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- PFAM (.pfam) BEGIN -->
+                  <action name="PFAM (.pfam) message" id="10054" customizedId="PFAM-pfam-10054-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PFAM (.pfam)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -930,25 +817,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10067" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="PFAM (.pfam) progress bar 72" id="10055" customizedId="PFAM-pfam-10055-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="76" />
+                      <property name="percentValue" type="int" value="72" />
                     </serializedBean>
                   </action>
 
-                  <action id="10068" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pfam file association">
+                  <action name="PFAM (.pfam) file association" id="10056" customizedId="PFAM-pfam-10056-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pfam file association">
                     <serializedBean>
                       <property name="description" type="string">PFAM File</property>
                       <property name="extension" type="string">pfam</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pfam+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -963,8 +851,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10069" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- PHYLIP (.phy) BEGIN -->
+                  <action name="PHYLIP (.phy) message" id="10057" customizedId="PHYLIP-phy-10057-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PHYLIP (.phy)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -972,25 +862,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10070" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="PHYLIP (.phy) progress bar 76" id="10058" customizedId="PHYLIP-phy-10058-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="80" />
+                      <property name="percentValue" type="int" value="76" />
                     </serializedBean>
                   </action>
 
-                  <action id="10071" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .phy file association">
+                  <action name="PHYLIP (.phy) file association" id="10059" customizedId="PHYLIP-phy-10059-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .phy file association">
                     <serializedBean>
                       <property name="description" type="string">PHYLIP File</property>
                       <property name="extension" type="string">phy</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-phylip+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1005,8 +896,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10072" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- PileUp (.pileup) BEGIN -->
+                  <action name="PileUp (.pileup) message" id="10060" customizedId="PileUp-pileup-10060-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PileUp (.pileup)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -1014,25 +907,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10073" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="PileUp (.pileup) progress bar 80" id="10061" customizedId="PileUp-pileup-10061-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="83" />
+                      <property name="percentValue" type="int" value="80" />
                     </serializedBean>
                   </action>
 
-                  <action id="10074" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pileup file association">
+                  <action name="PileUp (.pileup) file association" id="10062" customizedId="PileUp-pileup-10062-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pileup file association">
                     <serializedBean>
                       <property name="description" type="string">PileUp File</property>
                       <property name="extension" type="string">pileup</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pileup+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1047,8 +941,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10075" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- PIR (.pir) BEGIN -->
+                  <action name="PIR (.pir) message" id="10063" customizedId="PIR-pir-10063-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">PIR (.pir)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -1056,25 +952,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10076" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="PIR (.pir) progress bar 84" id="10064" customizedId="PIR-pir-10064-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="86" />
+                      <property name="percentValue" type="int" value="84" />
                     </serializedBean>
                   </action>
 
-                  <action id="10077" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pir file association">
+                  <action name="PIR (.pir) file association" id="10065" customizedId="PIR-pir-10065-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .pir file association">
                     <serializedBean>
                       <property name="description" type="string">PIR File</property>
                       <property name="extension" type="string">pir</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-pir+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1089,8 +986,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10078" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- RNAML (.rnaml) BEGIN -->
+                  <action name="RNAML (.rnaml) message" id="10066" customizedId="RNAML-rnaml-10066-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">RNAML (.rnaml)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -1098,25 +997,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10079" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="RNAML (.rnaml) progress bar 88" id="10067" customizedId="RNAML-rnaml-10067-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="90" />
+                      <property name="percentValue" type="int" value="88" />
                     </serializedBean>
                   </action>
 
-                  <action id="10080" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .rnaml file association">
+                  <action name="RNAML (.rnaml) file association" id="10068" customizedId="RNAML-rnaml-10068-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .rnaml file association">
                     <serializedBean>
                       <property name="description" type="string">RNAML File</property>
                       <property name="extension" type="string">rnaml</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/rnaml+xml</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1131,8 +1031,10 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10081" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Substitution Matrix (.mat) BEGIN -->
+                  <action name="Substitution Matrix (.mat) message" id="10069" customizedId="Substitution Matrix-mat-10069-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
                       <property name="detailMessage" type="string">Substitution Matrix (.mat)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
@@ -1140,25 +1042,26 @@
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10082" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+
+                  <action name="Substitution Matrix (.mat) progress bar 92" id="10070" customizedId="Substitution Matrix-mat-10070-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="93" />
+                      <property name="percentValue" type="int" value="92" />
                     </serializedBean>
                   </action>
 
-                  <action id="10083" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mat file association">
+                  <action name="Substitution Matrix (.mat) file association" id="10071" customizedId="Substitution Matrix-mat-10071-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .mat file association">
                     <serializedBean>
                       <property name="description" type="string">Substitution Matrix File</property>
                       <property name="extension" type="string">mat</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-jalview-scorematrix+text</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1173,76 +1076,37 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->
 
-                  <action id="10084" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
+<!-- Stockholm (.stk, .sto) BEGIN -->
+                  <action name="Stockholm (.stk, .sto) message" id="10072" customizedId="Stockholm-stk,sto-10072-message" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="detailMessage" type="string">Stockholm (.sto)</property>
+                      <property name="detailMessage" type="string">Stockholm (.stk, .sto)</property>
                       <property name="statusMessage" type="string">Creating file associations...</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
                   </action>
-                  <action id="10085" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="percentValue" type="int" value="96" />
-                    </serializedBean>
-                  </action>
-
-                  <action id="10086" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .sto file association">
-                    <serializedBean>
-                      <property name="description" type="string">Stockholm File</property>
-                      <property name="extension" type="string">sto</property>
-                      <property name="launcherId" type="string">737</property>
-                      <property name="macIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.icns</string>
-                        </object>
-                      </property>
-                      <!--<property name="macMimeType" type="string">application/x-stockholm+txt</property>-->
-                      <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
-                      <property name="restartFinder" type="boolean" value="true" />
-                      <property name="unix" type="boolean" value="true" />
-                      <property name="unixIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.png</string>
-                        </object>
-                      </property>
-                      <property name="unixMimeType" type="string">application/x-stockholm+txt</property>
-                      <property name="windowsIconFile">
-                        <object class="com.install4j.api.beans.ExternalFile">
-                          <string>Jalview-File.ico</string>
-                        </object>
-                      </property>
-                    </serializedBean>
-                  </action>
 
-                  <action id="10087" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
-                    <serializedBean>
-                      <property name="detailMessage" type="string">Stockholm (.stk)</property>
-                      <property name="statusMessage" type="string">Creating file associations...</property>
-                      <property name="useDetail" type="boolean" value="true" />
-                      <property name="useStatus" type="boolean" value="true" />
-                    </serializedBean>
-                  </action>
-                  <action id="10088" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
+                  <action name="Stockholm (.stk, .sto) progress bar 96" id="10073" customizedId="Stockholm-stk,sto-10073-progressbar" beanClass="com.install4j.runtime.beans.actions.control.SetProgressAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="percentValue" type="int" value="100" />
+                      <property name="percentValue" type="int" value="96" />
                     </serializedBean>
                   </action>
 
-                  <action id="10089" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .stk file association">
+                  <action name="Stockholm (.stk, .sto) file association" id="10074" customizedId="Stockholm-stk,sto-10074-fileassociation" beanClass="com.install4j.runtime.beans.actions.desktop.CreateFileAssociationAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make .stk,sto file association">
                     <serializedBean>
                       <property name="description" type="string">Stockholm File</property>
-                      <property name="extension" type="string">stk</property>
-                      <property name="launcherId" type="string">737</property>
+                      <property name="extension" type="string">stk,sto</property>
+                      <property name="launcherId" type="string">JALVIEW</property>
                       <property name="macIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
                           <string>Jalview-File.icns</string>
                         </object>
                       </property>
-                      <!--<property name="macMimeType" type="string">application/x-stockholm+txt</property>-->
                       <property name="macRole" type="enum" class="com.install4j.runtime.beans.actions.desktop.MacAssociationRole" value="EDITOR" />
                       <property name="restartFinder" type="boolean" value="true" />
+                      <property name="selected" type="boolean" value="true" />
                       <property name="unix" type="boolean" value="true" />
                       <property name="unixIconFile">
                         <object class="com.install4j.api.beans.ExternalFile">
@@ -1257,4 +1121,5 @@
                       </property>
                     </serializedBean>
                   </action>
+<!-- END -->