X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Finstall4j%2Finstall4j8_template.install4j;h=53f7853bb7df43968b6d1c1028450fe47aff646a;hb=ecdae8027a9bad9e43f0ab12c54aec09fade15a1;hp=0ab7fad5e2d65e23d7c20cd312bebd5a671f26c1;hpb=33f9fc9a47c1907525e07683fa66797afb233b3e;p=jalview.git

diff --git a/utils/install4j/install4j8_template.install4j b/utils/install4j/install4j8_template.install4j
index 0ab7fad..53f7853 100644
--- a/utils/install4j/install4j8_template.install4j
+++ b/utils/install4j/install4j8_template.install4j
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<install4j version="8.0.10" transformSequenceNumber="8">
-  <directoryPresets config="../.." />
+<install4j version="8.0.11" transformSequenceNumber="8">
+  <directoryPresets config="bin/jalview" />
   <application name="${compiler:JALVIEW_APPLICATION_NAME}" applicationId="${compiler:WINDOWS_APPLICATION_ID}" mediaDir="${compiler:BUILD_DIR}" lzmaCompression="true" shortName="${compiler:INTERNAL_ID}" publisher="University of Dundee" publisherWeb="https://www.jalview.org/" version="${compiler:JALVIEW_VERSION}" allPathsRelative="true" macVolumeId="5aac4968c304f65" javaMinVersion="${compiler:JAVA_MIN_VERSION}" javaMaxVersion="9999999999${compiler:JAVA_MAX_VERSION}" allowBetaVM="true" jdkMode="jdk" jdkName="JDK 11.0">
     <searchSequence>
       <directory location="${compiler:JRE_DIR}" />
@@ -34,9 +34,10 @@
       <variable name="INTERNAL_ID" value="Jalview" />
       <variable name="WINDOWS_APPLICATION_ID" value="6595-2347-1923-0725" />
       <variable name="MACOS_DMG_DS_STORE" value="jalview_dmg_DS_Store" />
-      <variable name="MACOS_DMG_BG_IMAGE" />
-      <variable name="MACOS_DMG_WRAPPER_LINK" />
-      <variable name="MACOS_WRAPPER_SCRIPT" />
+      <variable name="MACOS_DMG_BG_IMAGE" value="jalview_dmg_background-72dpi.png" />
+      <variable name="WRAPPER_LINK" value="jalview" />
+      <variable name="BASH_WRAPPER_SCRIPT" value="jalview.sh" />
+      <variable name="WRAPPER_SCRIPT_BIN_DIR" value="bin" />
       <variable name="INSTALLER_NAME" value="Jalview Installer" />
       <variable name="INSTALL4J_UTILS_DIR" value="utils/install4j" />
       <variable name="GETDOWN_WEBSITE_DIR" value="getdown/website" />
@@ -106,17 +107,11 @@
       <dirEntry mountPoint="454" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_FILES_DIR}/${compiler:JAVA_VERSION}" uninstallMode="2" overrideOverwriteMode="true" overrideUninstallMode="true" subDirectory="files" />
       <dirEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}" uninstallMode="2" overrideOverwriteMode="true" overrideUninstallMode="true" subDirectory="files">
         <exclude>
-          <entry location="jalviewc" />
-          <entry location="jalviewc-macos" />
-          <entry location="jalviewc-windows" />
-          <entry location="jalviewc.ps1" />
+          <entry location="${compiler:WRAPPER_SCRIPT_BIN_DIR}" />
         </exclude>
       </dirEntry>
       <dirEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/examples" overwriteMode="1" uninstallMode="2" overrideFileMode="true" overrideOverwriteMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="examples" />
-      <fileEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}/jalviewc" fileMode="755" overrideFileMode="true" />
-      <fileEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}/jalviewc-macos" fileMode="755" overrideFileMode="true" />
-      <fileEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}/jalviewc-windows" fileMode="755" overrideFileMode="true" />
-      <fileEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}/jalviewc.ps1" fileMode="755" overrideFileMode="true" />
+      <dirEntry mountPoint="736" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}/${compiler:WRAPPER_SCRIPT_BIN_DIR}" fileMode="755" overrideFileMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:WRAPPER_SCRIPT_BIN_DIR}" overrideDirMode="true" />
       <dirEntry mountPoint="884" file="${compiler:MACOS_JAVA_VM_DIR}" fileMode="755" overrideFileMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" />
       <dirEntry mountPoint="885" file="${compiler:WINDOWS_JAVA_VM_DIR}" fileMode="755" overrideFileMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:JRE_DIR}" />
       <dirEntry mountPoint="1875" file="${compiler:JALVIEW_DIR}/${compiler:GETDOWN_WEBSITE_DIR}/${compiler:JAVA_VERSION}/${compiler:GETDOWN_DIST_DIR}" overwriteMode="1" uninstallMode="2" overrideFileMode="true" overrideOverwriteMode="true" overrideUninstallMode="true" entryMode="subdir" subDirectory="${compiler:GETDOWN_DIST_DIR}" overrideDirMode="true" />
@@ -150,7 +145,7 @@
     </components>
   </files>
   <launchers>
-    <launcher name="Jalview Launcher" id="737" menuName="${compiler:JALVIEW_APPLICATION_NAME}" icnsFile="${compiler:JALVIEW_DIR}/${compiler:MAC_ICONS_FILE}" customMacBundleIdentifier="true" macBundleIdentifier="${compiler:BUNDLE_ID}" fileset="734" useCustomMacosExecutableName="true" customMacosExecutableName="${compiler:JALVIEW_APPLICATION_NAME}">
+    <launcher name="Jalview Launcher" id="737" customizedId="JALVIEW" menuName="${compiler:JALVIEW_APPLICATION_NAME}" icnsFile="${compiler:JALVIEW_DIR}/${compiler:MAC_ICONS_FILE}" customMacBundleIdentifier="true" macBundleIdentifier="${compiler:BUNDLE_ID}" fileset="734" useCustomMacosExecutableName="true" customMacosExecutableName="${compiler:JALVIEW_APPLICATION_NAME}">
       <executable name="${compiler:EXECUTABLE_NAME}" iconSet="true" iconFile="${compiler:JALVIEW_DIR}/${compiler:WINDOWS_ICONS_FILE}" redirectStdout="true" executableMode="gui" changeWorkingDirectory="false" singleInstance="true" checkConsoleParameter="true">
         <versionInfo include="true" fileDescription="${compiler:sys.fullName}" legalCopyright="${compiler:COPYRIGHT_MESSAGE}" internalName="${compiler:INTERNAL_ID}" productName="${compiler:sys.fullName}" />
       </executable>
@@ -249,6 +244,35 @@
                   <property name="obtainIfAdminWin" type="boolean" value="false" />
                 </serializedBean>
               </action>
+              <action name="Set unixUserBinDir (Linux or Unix)" id="2738" beanClass="com.install4j.runtime.beans.actions.control.SetVariableAction" rollbackBarrierExitCode="0">
+                <serializedBean>
+                  <property name="script">
+                    <object class="com.install4j.api.beans.ScriptProperty">
+                      <property name="value" type="string">String userHome = (String)context.getVariable("sys.userHome");
+
+String[] tryPaths = new String[] {
+    "bin",
+    ".local" + File.separator + "bin",
+    "local" + File.separator + "bin",
+    "opt" + File.separator + "bin"
+};
+
+for (int i = 0; i &lt; tryPaths.length; i++) {
+    String tryPath = tryPaths[i];
+    File unixUserBinDir = new File(userHome + File.separator + tryPath);
+    if (unixUserBinDir.exists()) {
+        return tryPath;
+    }
+}
+
+return null;
+</property>
+                    </object>
+                  </property>
+                  <property name="variableName" type="string">unixUserBinDir</property>
+                </serializedBean>
+                <condition>Util.isLinux() || Util.isUnixInstaller()</condition>
+              </action>
             </actions>
           </screen>
         </startup>
@@ -495,7 +519,7 @@ return console.askOkCancel(message, true);
                   </action>
                   <action id="2542" beanClass="com.install4j.runtime.beans.actions.control.SetMessageAction" actionElevationType="none" rollbackBarrierExitCode="0">
                     <serializedBean>
-                      <property name="statusMessage" type="string">Creating file associations</property>
+                      <property name="statusMessage" type="string">Finished creating file associations</property>
                       <property name="useDetail" type="boolean" value="true" />
                       <property name="useStatus" type="boolean" value="true" />
                     </serializedBean>
@@ -509,19 +533,19 @@ return console.askOkCancel(message, true);
               </group>
               <action id="2350" beanClass="com.install4j.runtime.beans.actions.desktop.UrlHandlerAction" actionElevationType="elevated" rollbackBarrierExitCode="0">
                 <serializedBean>
-                  <property name="launcherId" type="string">737</property>
+                  <property name="launcherId" type="string">JALVIEW</property>
                   <property name="scheme" type="string">jalview</property>
                 </serializedBean>
               </action>
               <action id="2450" beanClass="com.install4j.runtime.beans.actions.desktop.UrlHandlerAction" actionElevationType="elevated" rollbackBarrierExitCode="0">
                 <serializedBean>
-                  <property name="launcherId" type="string">737</property>
+                  <property name="launcherId" type="string">JALVIEW</property>
                   <property name="scheme" type="string">jalviews</property>
                 </serializedBean>
               </action>
               <action id="2641" beanClass="com.install4j.runtime.beans.actions.desktop.UrlHandlerAction" actionElevationType="elevated" rollbackBarrierExitCode="0">
                 <serializedBean>
-                  <property name="launcherId" type="string">737</property>
+                  <property name="launcherId" type="string">JALVIEW</property>
                   <property name="scheme" type="string">${compiler:EXTRA_SCHEME}</property>
                 </serializedBean>
               </action>
@@ -593,6 +617,44 @@ return console.askOkCancel(message, true);
                 </serializedBean>
                 <condition>context.getBooleanVariable("addToDockAction")</condition>
               </action>
+              <action name="Linux/Unix symlink" id="2733" beanClass="com.install4j.runtime.beans.actions.files.CreateSymlinkAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make symlink to wrapper script">
+                <serializedBean>
+                  <property name="file">
+                    <object class="java.io.File">
+                      <string>${compiler:WRAPPER_SCRIPT_BIN_DIR}/${compiler:BASH_WRAPPER_SCRIPT}</string>
+                    </object>
+                  </property>
+                  <property name="linkFile">
+                    <object class="java.io.File">
+                      <string>${compiler:WRAPPER_SCRIPT_BIN_DIR}/${compiler:WRAPPER_LINK}</string>
+                    </object>
+                  </property>
+                </serializedBean>
+                <condition>!Util.isWindows()</condition>
+              </action>
+              <action name="Add Jalview bin to the user's path (Windows)" id="2740" beanClass="com.install4j.runtime.beans.actions.misc.ModifyEnvironmentVariableAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not add &quot;${installer:sys.contentDir}\${compiler:WRAPPER_SCRIPT_BIN_DIR}&quot; to the Path environment variable">
+                <serializedBean>
+                  <property name="type" type="enum" class="com.install4j.runtime.beans.actions.misc.ModifyStringType" value="APPEND" />
+                  <property name="value" type="string">${installer:sys.contentDir}\${compiler:WRAPPER_SCRIPT_BIN_DIR}</property>
+                  <property name="variableName" type="string">Path</property>
+                </serializedBean>
+                <condition>context.getBooleanVariable("appendToPathAction")</condition>
+              </action>
+              <action name="Create symbolic link to jalview.sh in user's local bin" id="2739" beanClass="com.install4j.runtime.beans.actions.files.CreateSymlinkAction" actionElevationType="elevated" rollbackBarrierExitCode="0" errorMessage="Could not make a ${compiler:WRAPPER_LINK} symbolic link in ~/${installer:unixUserBinDir}">
+                <serializedBean>
+                  <property name="file">
+                    <object class="java.io.File">
+                      <string>${installer:sys.contentDir}/${compiler:WRAPPER_SCRIPT_BIN_DIR}/${compiler:BASH_WRAPPER_SCRIPT}</string>
+                    </object>
+                  </property>
+                  <property name="linkFile">
+                    <object class="java.io.File">
+                      <string>${installer:sys.userHome}/${installer:unixUserBinDir}/${compiler:WRAPPER_LINK}</string>
+                    </object>
+                  </property>
+                </serializedBean>
+                <condition>context.getBooleanVariable("makeSymbolicLink") &amp;&amp; ( Util.isLinux() || Util.isUnixInstaller() ) &amp;&amp; ( context.getVariable("unixUserBinDir") != null )</condition>
+              </action>
             </actions>
             <formComponents>
               <formComponent id="21" beanClass="com.install4j.runtime.beans.formcomponents.MultilineLabelComponent" insetBottom="10">
@@ -615,6 +677,22 @@ return console.askOkCancel(message, true);
                 </serializedBean>
                 <visibilityScript>Util.isMacOS()</visibilityScript>
               </formComponent>
+              <formComponent name="Add jalview bin to the user's Path environment variable (Windows)" id="2734" beanClass="com.install4j.runtime.beans.formcomponents.CheckboxComponent">
+                <serializedBean>
+                  <property name="checkboxText" type="string">Add ${compiler:JALVIEW_APPLICATION_NAME}'s bin folder to the Path environment variable</property>
+                  <property name="initiallySelected" type="boolean" value="true" />
+                  <property name="variableName" type="string">appendToPathAction</property>
+                </serializedBean>
+                <visibilityScript>Util.isWindows()</visibilityScript>
+              </formComponent>
+              <formComponent name="Make a symbolic link to jalview.sh bash script in the user's local bin (Linux or Unix)" id="2736" beanClass="com.install4j.runtime.beans.formcomponents.CheckboxComponent">
+                <serializedBean>
+                  <property name="checkboxText" type="string">Make a ${compiler:WRAPPER_LINK} symbolic link in ~/${installer:unixUserBinDir}</property>
+                  <property name="initiallySelected" type="boolean" value="true" />
+                  <property name="variableName" type="string">makeSymbolicLink</property>
+                </serializedBean>
+                <visibilityScript>( Util.isLinux() || Util.isUnixInstaller() ) &amp;&amp; ( context.getVariable("unixUserBinDir") != null )</visibilityScript>
+              </formComponent>
             </formComponents>
           </screen>
         </screens>
@@ -717,7 +795,7 @@ return console.askYesNo(message, true);
               </action>
               <action id="1525" beanClass="com.install4j.runtime.beans.actions.files.DeleteFileAction" actionElevationType="elevated" rollbackBarrierExitCode="0">
                 <serializedBean>
-                  <property name="files" type="array" class="java.io.File" length="44">
+                  <property name="files" type="array" class="java.io.File" length="40">
                     <element index="0">
                       <object class="java.io.File">
                         <string>jre</string>
@@ -900,42 +978,22 @@ return console.askYesNo(message, true);
                     </element>
                     <element index="36">
                       <object class="java.io.File">
-                        <string>jalviewc</string>
+                        <string>${compiler:WRAPPER_SCRIPT_BIN_DIR}</string>
                       </object>
                     </element>
                     <element index="37">
                       <object class="java.io.File">
-                        <string>jalviewc-macos</string>
+                        <string>bin</string>
                       </object>
                     </element>
                     <element index="38">
                       <object class="java.io.File">
-                        <string>jalviewc.ps1</string>
+                        <string>channel.props</string>
                       </object>
                     </element>
                     <element index="39">
                       <object class="java.io.File">
-                        <string>jalviewcv</string>
-                      </object>
-                    </element>
-                    <element index="40">
-                      <object class="java.io.File">
-                        <string>jalviewc-macosv</string>
-                      </object>
-                    </element>
-                    <element index="41">
-                      <object class="java.io.File">
-                        <string>jalviewc.ps1v</string>
-                      </object>
-                    </element>
-                    <element index="42">
-                      <object class="java.io.File">
-                        <string>jalviewc-windows</string>
-                      </object>
-                    </element>
-                    <element index="43">
-                      <object class="java.io.File">
-                        <string>jalviewc-windowsv</string>
+                        <string>channel.propsv</string>
                       </object>
                     </element>
                   </property>
@@ -1197,7 +1255,7 @@ return console.askYesNo(message, true);
     </styles>
   </installerGui>
   <mediaSets>
-    <windows name="Windows x64 EXE Installer" id="743" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:APPLICATION_FOLDER}" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" customInstallBaseDir="~/AppData/Local">
+    <windows name="Windows x64 Installer" id="743" customizedId="WINDOWS-X64-EXE" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:APPLICATION_FOLDER}" runPostProcessor="true" postProcessor="${compiler:JSIGN_SH} $EXECUTABLE" customInstallBaseDir="~/AppData/Local">
       <excludedComponents>
         <component id="1155" />
         <component id="1156" />
@@ -1213,7 +1271,7 @@ return console.askYesNo(message, true);
       </exclude>
       <jreBundle jreBundleSource="preCreated" includedJre="${compiler:WINDOWS_JAVA_VM_TGZ}" manualJreEntry="true" />
     </windows>
-    <macosArchive name="macOS Disk Image" id="878" customizedId="MACOS_DISK_IMAGE" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" volumeName="${compiler:INSTALLER_NAME}" launcherId="737">
+    <macosArchive name="macOS Disk Image" id="878" customizedId="MACOS-X64-DMG" mediaFileName="${compiler:APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" volumeName="${compiler:INSTALLER_NAME}" launcherId="737">
       <excludedComponents>
         <component id="1156" />
         <component id="1276" />
@@ -1229,11 +1287,11 @@ return console.askYesNo(message, true);
         <file name=".background/jalview_dmg_background.png" file="${compiler:JALVIEW_DIR}/${compiler:MACOS_DMG_BG_IMAGE}" />
         <file name=".DS_Store" file="${compiler:JALVIEW_DIR}/${compiler:MACOS_DMG_DS_STORE}" />
         <file name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/Resources/Jalview-File.icns" file="${compiler:JALVIEW_DIR}/${compiler:INSTALL4J_UTILS_DIR}/Jalview-File.icns" />
-        <file name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/Resources/Jalview-Launch.icns" file="${compiler:JALVIEW_DIR}/${compiler:INSTALL4J_UTILS_DIR}/Jalview-Launch.icns" />
-        <symlink name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/MacOS/${compiler:MACOS_DMG_WRAPPER_LINK}" target="../Resources/app/${compiler:MACOS_WRAPPER_SCRIPT}" />
+        <file name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/Resources/jvl_file.icns" file="${compiler:JALVIEW_DIR}/${compiler:INSTALL4J_UTILS_DIR}/jvl_file.icns" />
+        <symlink name="${compiler:JALVIEW_APPLICATION_NAME}.app/Contents/MacOS/${compiler:WRAPPER_LINK}" target="../Resources/app/${compiler:WRAPPER_SCRIPT_BIN_DIR}/${compiler:BASH_WRAPPER_SCRIPT}" />
       </topLevelFiles>
     </macosArchive>
-    <unixInstaller name="Linux x64 Shell Installer" id="1595" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-linux_x64-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
+    <unixInstaller name="Linux x64 Shell Installer" id="1595" customizedId="LINUX-X64-SH" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-linux_x64-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
       <excludedComponents>
         <component id="1155" />
         <component id="1156" />
@@ -1249,7 +1307,7 @@ return console.askYesNo(message, true);
       </exclude>
       <jreBundle jreBundleSource="preCreated" includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
     </unixInstaller>
-    <unixArchive name="Unix .tar.gz Archive" id="1596" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}">
+    <unixArchive name="Unix .tar.gz Archive" id="1596" customizedId="UNIX--TGZ" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}">
       <excludedComponents>
         <component id="1155" />
         <component id="1156" />
@@ -1265,7 +1323,7 @@ return console.askYesNo(message, true);
       </exclude>
       <jreBundle includedJre="${compiler:LINUX_JAVA_VM_TGZ}" manualJreEntry="true" />
     </unixArchive>
-    <unixInstaller name="Unix Shell Installer" id="2639" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
+    <unixInstaller name="Unix Shell Installer" id="2639" customizedId="UNIX--SH" mediaFileName="${compiler:UNIX_APPLICATION_FOLDER}-${compiler:JALVIEW_VERSION}-${compiler:sys.platform}-java_${compiler:JAVA_INTEGER_VERSION}" installDir="${compiler:UNIX_APPLICATION_FOLDER}" customInstallBaseDir="~/opt/">
       <excludedComponents>
         <component id="1155" />
         <component id="1156" />