X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=utils%2Fjdeps_jlink_all.sh;h=9f79d2d8e1e76439d657db619add1eeef4ef9bba;hb=22e330ae3a2ae90e23b14692661bc633de99453d;hp=394e8b5faef54b0d2122d8bb5ae9325d67dd4b74;hpb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;p=jalview.git

diff --git a/utils/jdeps_jlink_all.sh b/utils/jdeps_jlink_all.sh
index 394e8b5..9f79d2d 100755
--- a/utils/jdeps_jlink_all.sh
+++ b/utils/jdeps_jlink_all.sh
@@ -1,23 +1,23 @@
 #/usr/bin/env bash
 
-# be in the jalview top level dir.
+# Be in the jalview top level dir.
 # lib -- contains usual jalview jar files
-# j11lib -- contains extra jar files needed in classpath for Java 11
-# j11mod -- contains java11 style modules to be put into the JRE (not needed at runtime)
+#        make sure it contains the extra jar files needed in classpath for Java 11
+# j11lib -- contains java11 style modules to be put into the JRE (not needed at runtime)
 #
 # j11jre -- dir containing JRE environments for jalview
 #
 # creates file modules.new which is comma-separated list of modules needed, can be used like this in jlink argument
 # and a java 11 JRE in j11jre/jre-new
 
-( for x in lib/*.jar j11lib/*.jar j11mod/*.jar dist/jalview.jar; do echo $x >&2; jdeps --list-deps --module-path j11mod $x | grep -v Warning: | grep -v "JDK removed" | sed -e 's/^ *//;s/\/.*//;s/$/,/;'; done ) | sort -u | perl -p -e 'chomp;' | sed -e 's/,$//;' > modules.new
+( for x in lib/*.jar j11lib/*.jar dist/jalview.jar; do echo $x >&2; jdeps --list-deps --module-path j11lib $x | grep -v Warning: | grep -v "JDK removed" | sed -e 's/^ *//;s/\/.*//;s/$/,/;'; done ) | sort -u | perl -p -e 'chomp;' | perl -p -e 's/,$//;chomp;' > modules.new
 
 if [ x$JAVA_HOME != x ]; then
-  jlink --no-header-files --no-man-pages --strip-debug --module-path "$JAVA_HOME/jmods:j11mod" --add-modules `cat modules.new` --compress=2 --output j11jre/jre-new
+  jlink --no-header-files --no-man-pages --strip-debug --module-path "$JAVA_HOME/jmods:j11lib" --add-modules `cat modules.new` --compress=2 --output j11jre/jre-new
 else
-  jlink --no-header-files --no-man-pages --strip-debug --module-path "j11mod" --add-modules `cat modules.new` --compress=2 --output j11jre/jre-new
+  jlink --no-header-files --no-man-pages --strip-debug --module-path "j11lib" --add-modules `cat modules.new` --compress=2 --output j11jre/jre-new
 fi
 
 
 # or if you're in a hurry for a one-liner...
-#jlink --no-header-files --no-man-pages --strip-debug --module-path "$JAVA_HOME/jmods:j11mod" --add-modules ` ( for x in lib/*.jar j11lib/*.jar j11mod/*.jar dist/jalview.jar; do echo $x >&2; jdeps --list-deps --module-path j11mod $x | grep -v "Warning:" | grep -v "JDK removed" | sed -e 's/^ *//;s/\/.*//;s/$/,/;'; done ) | sort -u | perl -p -e 'chomp;' | sed -e 's/,$//;' ` --compress=2 --output j11jre/jre-new
+#jlink --no-header-files --no-man-pages --strip-debug --module-path "$JAVA_HOME/jmods:j11lib" --add-modules ` ( for x in lib/*.jar j11lib/*.jar dist/jalview.jar; do echo $x >&2; jdeps --list-deps --module-path j11mod $x | grep -v "Warning:" | grep -v "JDK removed" | sed -e 's/^ *//;s/\/.*//;s/$/,/;'; done ) | sort -u | perl -p -e 'chomp;' | perl -p -e 's/,$//;chomp;' ` --compress=2 --output j11jre/jre-new