X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fdata%2Fmsa%2Fjaxws%2FCustomAlign.java;h=d2588648fdc7f1a79548550771aa4582cce19eb8;hb=6adca61e46b4daf4136621f942f313c74e44e61d;hp=92c9babfd302db8ae8062e1a30a13bbd9294fba0;hpb=212bbd43c19f645cccef34a608dc001fb694833c;p=jabaws.git

diff --git a/webservices/compbio/data/msa/jaxws/CustomAlign.java b/webservices/compbio/data/msa/jaxws/CustomAlign.java
index 92c9bab..d258864 100644
--- a/webservices/compbio/data/msa/jaxws/CustomAlign.java
+++ b/webservices/compbio/data/msa/jaxws/CustomAlign.java
@@ -7,8 +7,6 @@ import javax.xml.bind.annotation.XmlAccessorType;
 import javax.xml.bind.annotation.XmlElement;
 import javax.xml.bind.annotation.XmlRootElement;
 import javax.xml.bind.annotation.XmlType;
-import compbio.data.sequence.FastaSequence;
-import compbio.metadata.Option;
 
 @XmlRootElement(name = "customAlign", namespace = "http://msa.data.compbio/01/01/2010/")
 @XmlAccessorType(XmlAccessType.FIELD)
@@ -19,16 +17,16 @@ import compbio.metadata.Option;
 public class CustomAlign {
 
     @XmlElement(name = "fastaSequences", namespace = "")
-    private List<FastaSequence> fastaSequences;
+    private List<compbio.data.sequence.FastaSequence> fastaSequences;
     @XmlElement(name = "options", namespace = "")
-    private List<Option> options;
+    private List<compbio.metadata.Option> options;
 
     /**
      * 
      * @return
      *     returns List<FastaSequence>
      */
-    public List<FastaSequence> getFastaSequences() {
+    public List<compbio.data.sequence.FastaSequence> getFastaSequences() {
         return this.fastaSequences;
     }
 
@@ -37,7 +35,7 @@ public class CustomAlign {
      * @param fastaSequences
      *     the value for the fastaSequences property
      */
-    public void setFastaSequences(List<FastaSequence> fastaSequences) {
+    public void setFastaSequences(List<compbio.data.sequence.FastaSequence> fastaSequences) {
         this.fastaSequences = fastaSequences;
     }
 
@@ -46,7 +44,7 @@ public class CustomAlign {
      * @return
      *     returns List<Option>
      */
-    public List<Option> getOptions() {
+    public List<compbio.metadata.Option> getOptions() {
         return this.options;
     }
 
@@ -55,7 +53,7 @@ public class CustomAlign {
      * @param options
      *     the value for the options property
      */
-    public void setOptions(List<Option> options) {
+    public void setOptions(List<compbio.metadata.Option> options) {
         this.options = options;
     }