X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fclient%2FIOHelper.java;fp=webservices%2Fcompbio%2Fws%2Fclient%2FIOHelper.java;h=414af9c1a82f65178f5991f23cf28847ace30c5c;hb=a17f3c38045ca4509dc891722ea98143005119f6;hp=79357e5c8dce33bae248c5a498c5fee40df07e7c;hpb=4d6083e0cf39c4989e08bdaf9384e9d44c0da607;p=jabaws.git

diff --git a/webservices/compbio/ws/client/IOHelper.java b/webservices/compbio/ws/client/IOHelper.java
index 79357e5..414af9c 100644
--- a/webservices/compbio/ws/client/IOHelper.java
+++ b/webservices/compbio/ws/client/IOHelper.java
@@ -10,8 +10,9 @@ import java.io.FileReader;
 import java.io.IOException;
 import java.io.OutputStream;
 import java.util.ArrayList;
+import java.util.HashSet;
 import java.util.List;
-import java.util.Set;
+import java.util.Map;
 
 import compbio.data.sequence.Alignment;
 import compbio.data.sequence.ClustalAlignmentUtil;
@@ -118,9 +119,13 @@ public class IOHelper {
 	 * @param result
 	 *            the AACon scores to output
 	 */
-	static void writeOut(OutputStream outStream, Set<Score> result) {
+	static void writeOut(OutputStream outStream,
+			Map<String, HashSet<Score>> result) {
 		try {
-			Score.write(result, outStream);
+			for (Map.Entry<String, HashSet<Score>> entry : result.entrySet()) {
+				System.out.println(">" + entry.getKey());
+				Score.write(entry.getValue(), outStream);
+			}
 		} catch (IOException e) {
 			System.err
 					.println("Problems writing output file! Stack trace is below: ");