X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fserver%2FMafftWS.java;fp=webservices%2Fcompbio%2Fws%2Fserver%2FMafftWS.java;h=f293ae79d154209d638e330d86b4379e7e8d32d8;hb=23fb18b3f14a1b396f0c61f2ea4559fec758cb1d;hp=63de39b1d68b6cf2293946276e0e606890c69639;hpb=f21da2fc87f8f54a7f05bbbbd6592e0e1715d876;p=jabaws.git

diff --git a/webservices/compbio/ws/server/MafftWS.java b/webservices/compbio/ws/server/MafftWS.java
index 63de39b..f293ae7 100644
--- a/webservices/compbio/ws/server/MafftWS.java
+++ b/webservices/compbio/ws/server/MafftWS.java
@@ -66,7 +66,7 @@ public class MafftWS implements MsaWS<Mafft> {
 			throws JobSubmissionException {
 		WSUtil.validateFastaInput(sequences);
 		ConfiguredExecutable<Mafft> confMafft = init(sequences);
-		return WSUtil.align(sequences, confMafft, null, "align", getLimit(""));
+		return WSUtil.align(sequences, confMafft, log, "align", getLimit(""));
 	}
 
 	ConfiguredExecutable<Mafft> init(List<FastaSequence> dataSet)
@@ -88,7 +88,7 @@ public class MafftWS implements MsaWS<Mafft> {
 				Mafft.KEY_VALUE_SEPARATOR);
 		log.info("Setting parameters: " + params);
 		confMafft.addParameters(params);
-		return WSUtil.align(sequences, confMafft, null, "customAlign",
+		return WSUtil.align(sequences, confMafft, log, "customAlign",
 				getLimit(""));
 	}
 
@@ -106,7 +106,7 @@ public class MafftWS implements MsaWS<Mafft> {
 		// particular preset is not found
 		Limit<Mafft> limit = getLimit(preset.getName());
 
-		return WSUtil.align(sequences, confMafft, null, "presetAlign", limit);
+		return WSUtil.align(sequences, confMafft, log, "presetAlign", limit);
 	}
 
 	@SuppressWarnings("unchecked")