X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fserver%2FMuscleWS.java;h=a9d6c5205b7b3833728610552a0fcf3851a8b2c9;hb=191ed00f52901ed7ee6d1137637e66c999913be8;hp=95cef8b1fd5bdda5d902ecf3a66b79e8e9c947dc;hpb=1e1c3681ba25ee1797a46f871b8c80f259afe2ca;p=jabaws.git

diff --git a/webservices/compbio/ws/server/MuscleWS.java b/webservices/compbio/ws/server/MuscleWS.java
index 95cef8b..a9d6c52 100644
--- a/webservices/compbio/ws/server/MuscleWS.java
+++ b/webservices/compbio/ws/server/MuscleWS.java
@@ -66,7 +66,7 @@ public class MuscleWS implements MsaWS<Muscle> {
 			throws JobSubmissionException {
 		WSUtil.validateFastaInput(sequences);
 		ConfiguredExecutable<Muscle> confMuscle = init(sequences);
-		return WSUtil.align(sequences, confMuscle, null, "align", getLimit(""));
+		return WSUtil.align(sequences, confMuscle, log, "align", getLimit(""));
 	}
 
 	ConfiguredExecutable<Muscle> init(List<FastaSequence> sequences)
@@ -90,7 +90,7 @@ public class MuscleWS implements MsaWS<Muscle> {
 		List<String> params = WSUtil.getCommands(options,
 				Muscle.KEY_VALUE_SEPARATOR);
 		confMuscle.addParameters(params);
-		return WSUtil.align(sequences, confMuscle, null, "customAlign",
+		return WSUtil.align(sequences, confMuscle, log, "customAlign",
 				getLimit(""));
 	}
 
@@ -105,7 +105,7 @@ public class MuscleWS implements MsaWS<Muscle> {
 		ConfiguredExecutable<Muscle> confMuscle = init(sequences);
 		confMuscle.addParameters(preset.getOptions());
 		Limit<Muscle> limit = getLimit(preset.getName());
-		return WSUtil.align(sequences, confMuscle, null, "presetAlign", limit);
+		return WSUtil.align(sequences, confMuscle, log, "presetAlign", limit);
 	}
 
 	@SuppressWarnings("unchecked")