X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fserver%2FProbconsWS.java;fp=webservices%2Fcompbio%2Fws%2Fserver%2FProbconsWS.java;h=71f47302ea3fbf9a58d0f5a806b598885f665be2;hb=23fb18b3f14a1b396f0c61f2ea4559fec758cb1d;hp=3d80cad79a27cba2ed5434572fba79bf15b51c29;hpb=f21da2fc87f8f54a7f05bbbbd6592e0e1715d876;p=jabaws.git

diff --git a/webservices/compbio/ws/server/ProbconsWS.java b/webservices/compbio/ws/server/ProbconsWS.java
index 3d80cad..71f4730 100644
--- a/webservices/compbio/ws/server/ProbconsWS.java
+++ b/webservices/compbio/ws/server/ProbconsWS.java
@@ -63,8 +63,8 @@ public class ProbconsWS implements MsaWS<Probcons> {
 			throws JobSubmissionException {
 		WSUtil.validateFastaInput(sequences);
 		ConfiguredExecutable<Probcons> confProbcons = init(sequences);
-		return WSUtil.align(sequences, confProbcons, null, "align",
-				getLimit(""));
+		return WSUtil
+				.align(sequences, confProbcons, log, "align", getLimit(""));
 	}
 
 	ConfiguredExecutable<Probcons> init(List<FastaSequence> dataSet)
@@ -86,7 +86,7 @@ public class ProbconsWS implements MsaWS<Probcons> {
 				Probcons.KEY_VALUE_SEPARATOR);
 		log.info("Setting parameters:" + params);
 		confProbcons.addParameters(params);
-		return WSUtil.align(sequences, confProbcons, null, "customAlign",
+		return WSUtil.align(sequences, confProbcons, log, "customAlign",
 				getLimit(""));
 	}
 
@@ -101,8 +101,7 @@ public class ProbconsWS implements MsaWS<Probcons> {
 		ConfiguredExecutable<Probcons> confProbcons = init(sequences);
 		confProbcons.addParameters(preset.getOptions());
 		Limit<Probcons> limit = getLimit(preset.getName());
-		return WSUtil
-				.align(sequences, confProbcons, null, "presetAlign", limit);
+		return WSUtil.align(sequences, confProbcons, log, "presetAlign", limit);
 	}
 
 	@SuppressWarnings("unchecked")