X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fserver%2Fresource%2FMuscleWS_schema1.xsd;h=0895916f3a3e54464e9c138048c0e140de8f8974;hb=a966c1a63f4365f34a0567514dee6d1bc4d3af91;hp=90e11328ba83a5aff9dea184b9827ff5f0284a5a;hpb=212bbd43c19f645cccef34a608dc001fb694833c;p=jabaws.git

diff --git a/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd b/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
index 90e1132..0895916 100644
--- a/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
+++ b/webservices/compbio/ws/server/resource/MuscleWS_schema1.xsd
@@ -47,14 +47,20 @@
 
   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
 
+  <xs:element name="limits" type="tns:limitsManager"/>
+
   <xs:element name="presetAlign" type="tns:presetAlign"/>
 
   <xs:element name="presetAlignResponse" type="tns:presetAlignResponse"/>
 
+  <xs:element name="presets" type="tns:presetManager"/>
+
   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
 
   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
 
+  <xs:element name="runnerConfig" type="tns:runnerConfig"/>
+
   <xs:complexType name="pullExecStatistics">
     <xs:sequence>
       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
@@ -69,7 +75,10 @@
   </xs:complexType>
 
   <xs:complexType name="chunkHolder">
-    <xs:sequence/>
+    <xs:sequence>
+      <xs:element name="chunk" type="xs:string" minOccurs="0"/>
+      <xs:element name="position" type="xs:long"/>
+    </xs:sequence>
   </xs:complexType>
 
   <xs:complexType name="align">
@@ -79,7 +88,10 @@
   </xs:complexType>
 
   <xs:complexType name="fastaSequence">
-    <xs:sequence/>
+    <xs:sequence>
+      <xs:element name="id" type="xs:string" minOccurs="0"/>
+      <xs:element name="sequence" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
   </xs:complexType>
 
   <xs:complexType name="alignResponse">
@@ -119,12 +131,13 @@
 
   <xs:complexType name="option">
     <xs:sequence>
-      <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
-      <xs:element name="description" type="xs:string" minOccurs="0"/>
+      <xs:element name="description" type="xs:string"/>
+      <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
+      <xs:element name="name" type="xs:string"/>
       <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
-      <xs:element name="name" type="xs:string" minOccurs="0"/>
-      <xs:element name="required" type="xs:boolean"/>
+      <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
     </xs:sequence>
+    <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
   </xs:complexType>
 
   <xs:complexType name="customAlignResponse">
@@ -139,58 +152,72 @@
     </xs:sequence>
   </xs:complexType>
 
-  <xs:complexType name="getLimits">
+  <xs:complexType name="getPresets">
     <xs:sequence/>
   </xs:complexType>
 
-  <xs:complexType name="getLimitsResponse">
+  <xs:complexType name="getPresetsResponse">
     <xs:sequence>
-      <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
+      <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
     </xs:sequence>
   </xs:complexType>
 
-  <xs:complexType name="limitsManager">
-    <xs:sequence/>
-  </xs:complexType>
-
-  <xs:complexType name="getLimit">
+  <xs:complexType name="presetManager">
     <xs:sequence>
-      <xs:element name="presetName" type="xs:string" minOccurs="0"/>
+      <xs:element name="runnerClassName" type="xs:string"/>
+      <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
     </xs:sequence>
   </xs:complexType>
 
-  <xs:complexType name="getLimitResponse">
+  <xs:complexType name="preset">
     <xs:sequence>
-      <xs:element name="return" type="tns:limit" minOccurs="0"/>
+      <xs:element name="name" type="xs:string"/>
+      <xs:element name="description" type="xs:string" minOccurs="0"/>
+      <xs:element name="optlist" minOccurs="0">
+        <xs:complexType>
+          <xs:sequence>
+            <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
+          </xs:sequence>
+        </xs:complexType>
+      </xs:element>
     </xs:sequence>
   </xs:complexType>
 
-  <xs:complexType name="limit">
+  <xs:complexType name="getLimits">
     <xs:sequence/>
   </xs:complexType>
 
-  <xs:complexType name="getPresets">
-    <xs:sequence/>
+  <xs:complexType name="getLimitsResponse">
+    <xs:sequence>
+      <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
+    </xs:sequence>
   </xs:complexType>
 
-  <xs:complexType name="getPresetsResponse">
+  <xs:complexType name="limitsManager">
     <xs:sequence>
-      <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
+      <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+      <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
     </xs:sequence>
   </xs:complexType>
 
-  <xs:complexType name="presetManager">
+  <xs:complexType name="limit">
     <xs:sequence>
-      <xs:element name="presets" type="tns:preset" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
-      <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+      <xs:element name="preset" type="xs:string" minOccurs="0"/>
+      <xs:element name="seqNumber" type="xs:int"/>
+      <xs:element name="seqLength" type="xs:int"/>
     </xs:sequence>
+    <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
   </xs:complexType>
 
-  <xs:complexType name="preset">
+  <xs:complexType name="getLimit">
     <xs:sequence>
-      <xs:element name="description" type="xs:string" minOccurs="0"/>
-      <xs:element name="name" type="xs:string" minOccurs="0"/>
-      <xs:element name="options" type="xs:string" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+      <xs:element name="presetName" type="xs:string" minOccurs="0"/>
+    </xs:sequence>
+  </xs:complexType>
+
+  <xs:complexType name="getLimitResponse">
+    <xs:sequence>
+      <xs:element name="return" type="tns:limit" minOccurs="0"/>
     </xs:sequence>
   </xs:complexType>
 
@@ -234,7 +261,7 @@
       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
-      <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
+      <xs:element name="runnerClassName" type="xs:string"/>
     </xs:sequence>
   </xs:complexType>
 
@@ -242,7 +269,7 @@
     <xs:complexContent>
       <xs:extension base="tns:option">
         <xs:sequence>
-          <xs:element name="optionName" type="xs:string" minOccurs="0"/>
+          <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
         </xs:sequence>
       </xs:extension>
@@ -251,7 +278,9 @@
 
   <xs:complexType name="valueConstrain">
     <xs:sequence>
-      <xs:element name="type" type="tns:type" minOccurs="0"/>
+      <xs:element name="type" type="tns:type"/>
+      <xs:element name="max" type="xs:string" minOccurs="0"/>
+      <xs:element name="min" type="xs:string" minOccurs="0"/>
     </xs:sequence>
   </xs:complexType>
 
@@ -268,7 +297,17 @@
   </xs:complexType>
 
   <xs:complexType name="alignment" final="extension restriction">
-    <xs:sequence/>
+    <xs:sequence>
+      <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
+      <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
+    </xs:sequence>
+  </xs:complexType>
+
+  <xs:complexType name="alignmentMetadata">
+    <xs:sequence>
+      <xs:element name="program" type="tns:program" minOccurs="0"/>
+      <xs:element name="gapchar" type="xs:unsignedShort"/>
+    </xs:sequence>
   </xs:complexType>
 
   <xs:complexType name="ResultNotAvailableException">
@@ -296,6 +335,16 @@
     </xs:restriction>
   </xs:simpleType>
 
+  <xs:simpleType name="program">
+    <xs:restriction base="xs:string">
+      <xs:enumeration value="CLUSTAL"/>
+      <xs:enumeration value="MAFFT"/>
+      <xs:enumeration value="MUSCLE"/>
+      <xs:enumeration value="Tcoffee"/>
+      <xs:enumeration value="Probcons"/>
+    </xs:restriction>
+  </xs:simpleType>
+
   <xs:simpleType name="jobStatus">
     <xs:restriction base="xs:string">
       <xs:enumeration value="PENDING"/>