X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=webservices%2Fcompbio%2Fws%2Fserver%2Fresource%2FTcoffeeWS.wsdl;h=183f6e84de55c562ec1a4836d3baa375afa67223;hb=84bf22e2d581e73c2e3eec18e0b315741360eb21;hp=c7b3cd55c4979fd7bea40fd9024229dad40e8924;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl b/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
index c7b3cd5..183f6e8 100644
--- a/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
+++ b/webservices/compbio/ws/server/resource/TcoffeeWS.wsdl
@@ -1,28 +1,25 @@
 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
-<!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is JAX-WS RI 2.2.1-hudson-28-. -->
+<!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is Metro/2.1 (branches/2.1-6728; 2011-02-03T14:14:58+0000) JAXWS-RI/2.2.3 JAXWS/2.2. -->
 <definitions targetNamespace="http://msa.data.compbio/01/01/2010/" name="TcoffeeWS" xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd">
   <types>
     <xsd:schema>
       <xsd:import namespace="http://msa.data.compbio/01/01/2010/" schemaLocation="TcoffeeWS_schema1.xsd"/>
     </xsd:schema>
   </types>
-  <message name="getPresets">
-    <part name="parameters" element="tns:getPresets"/>
-  </message>
-  <message name="getPresetsResponse">
-    <part name="parameters" element="tns:getPresetsResponse"/>
+  <message name="getResult">
+    <part name="parameters" element="tns:getResult"/>
   </message>
-  <message name="getLimit">
-    <part name="parameters" element="tns:getLimit"/>
+  <message name="getResultResponse">
+    <part name="parameters" element="tns:getResultResponse"/>
   </message>
-  <message name="getLimitResponse">
-    <part name="parameters" element="tns:getLimitResponse"/>
+  <message name="ResultNotAvailableException">
+    <part name="fault" element="tns:ResultNotAvailableException"/>
   </message>
-  <message name="presetAlign">
-    <part name="parameters" element="tns:presetAlign"/>
+  <message name="align">
+    <part name="parameters" element="tns:align"/>
   </message>
-  <message name="presetAlignResponse">
-    <part name="parameters" element="tns:presetAlignResponse"/>
+  <message name="alignResponse">
+    <part name="parameters" element="tns:alignResponse"/>
   </message>
   <message name="UnsupportedRuntimeException">
     <part name="fault" element="tns:UnsupportedRuntimeException"/>
@@ -33,35 +30,20 @@
   <message name="JobSubmissionException">
     <part name="fault" element="tns:JobSubmissionException"/>
   </message>
-  <message name="WrongParameterException">
-    <part name="fault" element="tns:WrongParameterException"/>
-  </message>
   <message name="customAlign">
     <part name="parameters" element="tns:customAlign"/>
   </message>
   <message name="customAlignResponse">
     <part name="parameters" element="tns:customAlignResponse"/>
   </message>
-  <message name="getRunnerOptions">
-    <part name="parameters" element="tns:getRunnerOptions"/>
-  </message>
-  <message name="getRunnerOptionsResponse">
-    <part name="parameters" element="tns:getRunnerOptionsResponse"/>
-  </message>
-  <message name="getResult">
-    <part name="parameters" element="tns:getResult"/>
-  </message>
-  <message name="getResultResponse">
-    <part name="parameters" element="tns:getResultResponse"/>
-  </message>
-  <message name="ResultNotAvailableException">
-    <part name="fault" element="tns:ResultNotAvailableException"/>
+  <message name="WrongParameterException">
+    <part name="fault" element="tns:WrongParameterException"/>
   </message>
-  <message name="getLimits">
-    <part name="parameters" element="tns:getLimits"/>
+  <message name="presetAlign">
+    <part name="parameters" element="tns:presetAlign"/>
   </message>
-  <message name="getLimitsResponse">
-    <part name="parameters" element="tns:getLimitsResponse"/>
+  <message name="presetAlignResponse">
+    <part name="parameters" element="tns:presetAlignResponse"/>
   </message>
   <message name="cancelJob">
     <part name="parameters" element="tns:cancelJob"/>
@@ -69,40 +51,54 @@
   <message name="cancelJobResponse">
     <part name="parameters" element="tns:cancelJobResponse"/>
   </message>
+  <message name="pullExecStatistics">
+    <part name="parameters" element="tns:pullExecStatistics"/>
+  </message>
+  <message name="pullExecStatisticsResponse">
+    <part name="parameters" element="tns:pullExecStatisticsResponse"/>
+  </message>
   <message name="getJobStatus">
     <part name="parameters" element="tns:getJobStatus"/>
   </message>
   <message name="getJobStatusResponse">
     <part name="parameters" element="tns:getJobStatusResponse"/>
   </message>
-  <message name="pullExecStatistics">
-    <part name="parameters" element="tns:pullExecStatistics"/>
+  <message name="getLimit">
+    <part name="parameters" element="tns:getLimit"/>
   </message>
-  <message name="pullExecStatisticsResponse">
-    <part name="parameters" element="tns:pullExecStatisticsResponse"/>
+  <message name="getLimitResponse">
+    <part name="parameters" element="tns:getLimitResponse"/>
   </message>
-  <message name="align">
-    <part name="parameters" element="tns:align"/>
+  <message name="getLimits">
+    <part name="parameters" element="tns:getLimits"/>
   </message>
-  <message name="alignResponse">
-    <part name="parameters" element="tns:alignResponse"/>
+  <message name="getLimitsResponse">
+    <part name="parameters" element="tns:getLimitsResponse"/>
+  </message>
+  <message name="getPresets">
+    <part name="parameters" element="tns:getPresets"/>
+  </message>
+  <message name="getPresetsResponse">
+    <part name="parameters" element="tns:getPresetsResponse"/>
+  </message>
+  <message name="getRunnerOptions">
+    <part name="parameters" element="tns:getRunnerOptions"/>
+  </message>
+  <message name="getRunnerOptionsResponse">
+    <part name="parameters" element="tns:getRunnerOptionsResponse"/>
   </message>
   <portType name="MsaWS">
-    <operation name="getPresets">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getPresetsRequest" message="tns:getPresets"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getPresetsResponse" message="tns:getPresetsResponse"/>
-    </operation>
-    <operation name="getLimit">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitRequest" message="tns:getLimit"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitResponse" message="tns:getLimitResponse"/>
+    <operation name="getResult">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultRequest" message="tns:getResult"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
+      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
     </operation>
-    <operation name="presetAlign">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/JobSubmissionException"/>
-      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/WrongParameterException"/>
+    <operation name="align">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
     </operation>
     <operation name="customAlign">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlignRequest" message="tns:customAlign"/>
@@ -112,42 +108,46 @@
       <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/JobSubmissionException"/>
       <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/customAlign/Fault/WrongParameterException"/>
     </operation>
-    <operation name="getRunnerOptions">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getRunnerOptionsRequest" message="tns:getRunnerOptions"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getRunnerOptionsResponse" message="tns:getRunnerOptionsResponse"/>
-    </operation>
-    <operation name="getResult">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultRequest" message="tns:getResult"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResultResponse" message="tns:getResultResponse"/>
-      <fault message="tns:ResultNotAvailableException" name="ResultNotAvailableException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getResult/Fault/ResultNotAvailableException"/>
-    </operation>
-    <operation name="getLimits">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitsRequest" message="tns:getLimits"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitsResponse" message="tns:getLimitsResponse"/>
+    <operation name="presetAlign">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignRequest" message="tns:presetAlign"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlignResponse" message="tns:presetAlignResponse"/>
+      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/UnsupportedRuntimeException"/>
+      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/LimitExceededException"/>
+      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/JobSubmissionException"/>
+      <fault message="tns:WrongParameterException" name="WrongParameterException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/presetAlign/Fault/WrongParameterException"/>
     </operation>
     <operation name="cancelJob">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobRequest" message="tns:cancelJob"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/cancelJobResponse" message="tns:cancelJobResponse"/>
     </operation>
+    <operation name="pullExecStatistics">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/pullExecStatisticsRequest" message="tns:pullExecStatistics"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/pullExecStatisticsResponse" message="tns:pullExecStatisticsResponse"/>
+    </operation>
     <operation name="getJobStatus">
       <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getJobStatusRequest" message="tns:getJobStatus"/>
       <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getJobStatusResponse" message="tns:getJobStatusResponse"/>
     </operation>
-    <operation name="pullExecStatistics">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/pullExecStatisticsRequest" message="tns:pullExecStatistics"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/pullExecStatisticsResponse" message="tns:pullExecStatisticsResponse"/>
+    <operation name="getLimit">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitRequest" message="tns:getLimit"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitResponse" message="tns:getLimitResponse"/>
     </operation>
-    <operation name="align">
-      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignRequest" message="tns:align"/>
-      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/alignResponse" message="tns:alignResponse"/>
-      <fault message="tns:UnsupportedRuntimeException" name="UnsupportedRuntimeException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/UnsupportedRuntimeException"/>
-      <fault message="tns:LimitExceededException" name="LimitExceededException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/LimitExceededException"/>
-      <fault message="tns:JobSubmissionException" name="JobSubmissionException" wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/align/Fault/JobSubmissionException"/>
+    <operation name="getLimits">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitsRequest" message="tns:getLimits"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getLimitsResponse" message="tns:getLimitsResponse"/>
+    </operation>
+    <operation name="getPresets">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getPresetsRequest" message="tns:getPresets"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getPresetsResponse" message="tns:getPresetsResponse"/>
+    </operation>
+    <operation name="getRunnerOptions">
+      <input wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getRunnerOptionsRequest" message="tns:getRunnerOptions"/>
+      <output wsam:Action="http://msa.data.compbio/01/01/2010/MsaWS/getRunnerOptionsResponse" message="tns:getRunnerOptionsResponse"/>
     </operation>
   </portType>
   <binding name="TcoffeeWSPortBinding" type="tns:MsaWS">
     <soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document"/>
-    <operation name="getPresets">
+    <operation name="getResult">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -155,8 +155,11 @@
       <output>
         <soap:body use="literal"/>
       </output>
+      <fault name="ResultNotAvailableException">
+        <soap:fault name="ResultNotAvailableException" use="literal"/>
+      </fault>
     </operation>
-    <operation name="getLimit">
+    <operation name="align">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -164,8 +167,17 @@
       <output>
         <soap:body use="literal"/>
       </output>
+      <fault name="UnsupportedRuntimeException">
+        <soap:fault name="UnsupportedRuntimeException" use="literal"/>
+      </fault>
+      <fault name="LimitExceededException">
+        <soap:fault name="LimitExceededException" use="literal"/>
+      </fault>
+      <fault name="JobSubmissionException">
+        <soap:fault name="JobSubmissionException" use="literal"/>
+      </fault>
     </operation>
-    <operation name="presetAlign">
+    <operation name="customAlign">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -186,7 +198,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
-    <operation name="customAlign">
+    <operation name="presetAlign">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -207,7 +219,7 @@
         <soap:fault name="WrongParameterException" use="literal"/>
       </fault>
     </operation>
-    <operation name="getRunnerOptions">
+    <operation name="cancelJob">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -216,7 +228,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="getResult">
+    <operation name="pullExecStatistics">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -224,11 +236,8 @@
       <output>
         <soap:body use="literal"/>
       </output>
-      <fault name="ResultNotAvailableException">
-        <soap:fault name="ResultNotAvailableException" use="literal"/>
-      </fault>
     </operation>
-    <operation name="getLimits">
+    <operation name="getJobStatus">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -237,7 +246,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="cancelJob">
+    <operation name="getLimit">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -246,7 +255,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="getJobStatus">
+    <operation name="getLimits">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -255,7 +264,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="pullExecStatistics">
+    <operation name="getPresets">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -264,7 +273,7 @@
         <soap:body use="literal"/>
       </output>
     </operation>
-    <operation name="align">
+    <operation name="getRunnerOptions">
       <soap:operation soapAction=""/>
       <input>
         <soap:body use="literal"/>
@@ -272,15 +281,6 @@
       <output>
         <soap:body use="literal"/>
       </output>
-      <fault name="UnsupportedRuntimeException">
-        <soap:fault name="UnsupportedRuntimeException" use="literal"/>
-      </fault>
-      <fault name="LimitExceededException">
-        <soap:fault name="LimitExceededException" use="literal"/>
-      </fault>
-      <fault name="JobSubmissionException">
-        <soap:fault name="JobSubmissionException" use="literal"/>
-      </fault>
     </operation>
   </binding>
   <service name="TcoffeeWS">