X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Farchive%2Fbinaries%2Fmac%2Fsrc%2Fdisembl%2FTisean_3.0.1%2Fsource_c%2Flfo-test.c;fp=website%2Farchive%2Fbinaries%2Fmac%2Fsrc%2Fdisembl%2FTisean_3.0.1%2Fsource_c%2Flfo-test.c;h=7c908792093b604e4e24e216cb0441258a5064ce;hb=dbde3fb6f00b9bb770343631a517c0e599db8528;hp=0000000000000000000000000000000000000000;hpb=85f830bbd51a7277994bd4233141016304e210c9;p=jabaws.git diff --git a/website/archive/binaries/mac/src/disembl/Tisean_3.0.1/source_c/lfo-test.c b/website/archive/binaries/mac/src/disembl/Tisean_3.0.1/source_c/lfo-test.c new file mode 100644 index 0000000..7c90879 --- /dev/null +++ b/website/archive/binaries/mac/src/disembl/Tisean_3.0.1/source_c/lfo-test.c @@ -0,0 +1,462 @@ +/* + * This file is part of TISEAN + * + * Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber + * + * TISEAN is free software; you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation; either version 2 of the License, or + * (at your option) any later version. + * + * TISEAN is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with TISEAN; if not, write to the Free Software + * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + */ +/*Author: Rainer Hegger */ +/*Changes: + Sep 8, 2006: Add -o functionality + Sep 7, 2006: Completely rewritten to handle multivariate data + */ +#include +#include +#include +#include +#include "routines/tsa.h" +#include + +#define WID_STR "Estimates the average forecast error of a local\n\t\ +linear fit" + + +/*number of boxes for the neighbor search algorithm*/ +#define NMAX 512 + +unsigned int nmax=(NMAX-1),comp1,hdim,**indexes; +long **box,*list; +unsigned long *found,*hfound; +double **series; +double epsilon; +double **mat,**imat,*vec,*localav,*foreav; + +char epsset=0,causalset=0; +unsigned int verbosity=VER_INPUT|VER_FIRST_LINE; +unsigned int COMP=1,EMBED=2,DIM,DELAY=1,MINN=30,STEP=1; +double EPS0=1.e-3,EPSF=1.2; +unsigned long LENGTH=ULONG_MAX,exclude=0,CLENGTH=ULONG_MAX,causal; +char *infile=NULL,*COLUMN=NULL,*outfile=NULL; +char dimset=0,stout=1; + +void show_options(char *progname) +{ + what_i_do(progname,WID_STR); + fprintf(stderr," Usage: %s [options]\n",progname); + fprintf(stderr," Options:\n"); + fprintf(stderr,"Everything not being a valid option will be interpreted" + " as a possible" + " datafile.\nIf no datafile is given stdin is read. Just - also" + " means stdin\n"); + fprintf(stderr,"\t-l # of data to use [default: whole file]\n"); + fprintf(stderr,"\t-x # of lines to be ignored [default: 0]\n"); + fprintf(stderr,"\t-c columns to read [default: 1]\n"); + fprintf(stderr,"\t-m # of components, embedding dimension " + "[default: %u,%u]\n",COMP,EMBED); + fprintf(stderr,"\t-d delay [default: 1]\n"); + fprintf(stderr,"\t-n iterations [default: length]\n"); + fprintf(stderr,"\t-k minimal number of neighbors for the fit " + "[default: 30]\n"); + fprintf(stderr,"\t-r neighborhoud size to start with " + "[default: (data interval)/1000]\n"); + fprintf(stderr,"\t-f factor to increase size [default: 1.2]\n"); + fprintf(stderr,"\t-s steps to forecast [default: 1]\n"); + fprintf(stderr,"\t-C width of causality window [default: steps]\n"); + fprintf(stderr,"\t-o output file [default 'datafile'.fce" + " no -o means write to stdout]\n"); + fprintf(stderr,"\t-V verbosity level [default: 1]\n\t\t" + "0='only panic messages'\n\t\t" + "1='+ input/output messages'\n\t\t" + "2='+ print indiviual forecast errors'\n"); + fprintf(stderr,"\t-h show these options\n"); + exit(0); +} + +void scan_options(int n,char **in) +{ + char *out; + + if ((out=check_option(in,n,'l','u')) != NULL) + sscanf(out,"%lu",&LENGTH); + if ((out=check_option(in,n,'x','u')) != NULL) + sscanf(out,"%lu",&exclude); + if ((out=check_option(in,n,'c','s')) != NULL) { + COLUMN=out; + dimset=1; + } + if ((out=check_option(in,n,'m','2')) != NULL) + sscanf(out,"%u,%u",&COMP,&EMBED); + if ((out=check_option(in,n,'d','u')) != NULL) + sscanf(out,"%u",&DELAY); + if ((out=check_option(in,n,'n','u')) != NULL) + sscanf(out,"%lu",&CLENGTH); + if ((out=check_option(in,n,'V','u')) != NULL) + sscanf(out,"%u",&verbosity); + if ((out=check_option(in,n,'k','u')) != NULL) + sscanf(out,"%u",&MINN); + if ((out=check_option(in,n,'r','f')) != NULL) { + epsset=1; + sscanf(out,"%lf",&EPS0); + } + if ((out=check_option(in,n,'f','f')) != NULL) + sscanf(out,"%lf",&EPSF); + if ((out=check_option(in,n,'s','u')) != NULL) + sscanf(out,"%u",&STEP); + if ((out=check_option(in,n,'C','u')) != NULL) { + sscanf(out,"%lu",&causal); + causalset=1; + } + if ((out=check_option(in,n,'o','o')) != NULL) { + stout=0; + if (strlen(out) > 0) + outfile=out; + } +} + +void put_in_boxes(void) +{ + int i,j,n; + double epsinv; + + epsinv=1.0/epsilon; + for (i=0;imax) ? dx : max; + if (max > epsilon) { + toolarge=1; + break; + } + if (toolarge) + break; + } + if (max <= epsilon) + hfound[nfound++]=element; + element=list[element]; + } + } + } + return nfound; +} + +void multiply_matrix(double **mat,double *vec) +{ + double *hvec; + long i,j; + + check_alloc(hvec=(double*)malloc(sizeof(double)*DIM)); + for (i=0;i MINN) { + make_fit(actfound,i,newcast); + for (j=0;j