X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Farchive%2Fbinaries%2Fmac%2Fsrc%2Ffasta34%2FMakefile.tc;fp=website%2Farchive%2Fbinaries%2Fmac%2Fsrc%2Ffasta34%2FMakefile.tc;h=0000000000000000000000000000000000000000;hb=fb21789ba11ae9b9f6abed1b01d4542e54abfe34;hp=82e03cc4a113bfa5eb0d9f18d5c78daeb6d8a136;hpb=7d68cf3489c816b2ed7afb1925a6de2168eccf4a;p=jabaws.git diff --git a/website/archive/binaries/mac/src/fasta34/Makefile.tc b/website/archive/binaries/mac/src/fasta34/Makefile.tc deleted file mode 100644 index 82e03cc..0000000 --- a/website/archive/binaries/mac/src/fasta34/Makefile.tc +++ /dev/null @@ -1,228 +0,0 @@ -# -# makefile for fasta3, fasta3_t. Use makefile.pvm for pvcompxx. - -# MSDOS Borland C commands -#CC= bcc -mm -w-rvl -w-pro -3 -O -CC= bcc32 -WC -w-rvl -w-pro -3 -O -#CFLAGS= -IC:\bc5\include -DFAR_PTR -DALLOCN0 -DMSDOS -CFLAGS=-IC:\bc5\include -DBIGMEM -DALLOCN0 -DMSDOS -#CL= bcc -mm -CL= bcc32 -WC -LFLAGS= -LC:\bc5\lib -NRAND= nrand -HZ=100 - - -XDIR = /seqprg/slib/bin - -SPROGS = fasta34.exe ssearch34.exe fastx34.exe tfastx34.exe fasty34.exe tfasty34.exe fasts34.exe tfasts34.exe prss34.exe prfx34.exe - -PROGS = $(SPROGS) - -all : $(PROGS) - -sall: $(SPROGS) - -clean-up: - del *.obj $(PROGS) - -install: - cp $(PROGS) $(XDIR) - -fasta34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_fa.obj scaleswn.obj karlin.obj drop_nfa.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj c_dispn.obj lib_sel.obj url_subs.obj nrand.obj getopt.obj - $(CL) $(LFLAGS) -efasta34.exe comp_lib.obj showalig.obj init_fa.obj drop_nfa.obj getseq.obj @fasta3.rsp -lm - -fastx34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_fx.obj scaleswn.obj karlin.obj drop_fx.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj nrand.obj getopt.obj - $(CL) $(LFLAGS) -efastx34.exe comp_lib.obj showalig.obj init_fx.obj drop_fx.obj faatran.obj getseq.obj @fasta3.rsp -lm - -fasty34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_fy.obj scaleswn.obj karlin.obj drop_fz.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj nrand.obj - $(CL) $(LFLAGS) -efasty34.exe comp_lib.obj showalig.obj init_fy.obj drop_fz.obj faatran.obj getseq.obj @fasta3.rsp -lm - -tfastx34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_tfx.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj scaleswn.obj karlin.obj tdropfx.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj nrand.obj - $(CL) $(LFLAGS) -etfastx34.exe comp_lib.obj showalig.obj init_tfx.obj tdropfx.obj faatran.obj getseq.obj @fasta3.rsp -lm - -tfasty34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_tfy.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj scaleswn.obj karlin.obj tdropfz.obj c_dispn.obj lib_sel.obj faatran.obj url_subs.obj nrand.obj - $(CL) $(LFLAGS) -etfasty34.exe comp_lib.obj showalig.obj init_tfy.obj tdropfz.obj faatran.obj getseq.obj @fasta3.rsp -lm - -ssearch34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_sw.obj scaleswn.obj karlin.obj dropgsw.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj c_dispn.obj lib_sel.obj url_subs.obj nrand.obj pssm_asn_subs.obj - $(CL) $(LFLAGS) -essearch34.exe comp_lib.obj showalig.obj init_sw.obj dropgsw.obj getseq.obj pssm_asn_subs.obj @fasta3.rsp -lm - -fasts34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_fs.obj dropfs2.obj scaleswt.obj karlin.obj tatsta_s.obj last_tat.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj c_dispn.obj lib_sel.obj url_subs.obj nrand.obj getopt.obj - $(CL) $(LFLAGS) -efasts34.exe comp_lib.obj showalig.obj init_fs.obj dropfs2.obj getseq.obj @fasts3.rsp -lm - -tfasts34.exe : comp_lib.obj compacc.obj showbest.obj showalig.obj htime.obj apam.obj doinit.obj init_tfs.obj droptfs2.obj scaleswt.obj karlin.obj tatsttfs.obj last_tat.obj getseq.obj lgetlib.obj regetlib.obj ncbl2_lib.obj c_dispn.obj lib_sel.obj url_subs.obj nrand.obj faatran.obj getopt.obj - $(CL) $(LFLAGS) -etfasts34.exe comp_lib.obj showalig.obj init_tfs.obj droptfs2.obj getseq.obj faatran.obj @tfasts3.rsp -lm - -prss34.exe : rcomplib.obj compacc.obj htime.obj apam.obj doinit.obj init_rss.obj scaleswn.obj karlin.obj dropgsw.obj llgetaa.obj showrss.obj lib_sel.obj nrand.obj getopt.obj pssm_asn_subs.obj - $(CL) $(LFLAGS) -eprss34.exe rcomplib.obj init_rss.obj dropgsw.obj llgetaa.obj nrand.obj @prss3.rsp -lm - -prfx34.exe : rcomplib.obj compacc.obj htime.obj apam.obj doinit.obj init_rfx.obj scaleswn.obj karlin.obj drop_fx.obj llgetaa.obj faatran.obj showrss.obj lib_sel.obj nrand.obj getopt.obj - $(CL) $(LFLAGS) -eprfx34.exe rcomplib.obj init_rfx.obj drop_fx.obj faatran.obj llgetaa.obj nrand.obj @prss3.rsp -lm - -comp_lib.obj : comp_lib.c mw.h structs.h defs.h param.h - $(CC) $(CFLAGS) -DPGM_DOC -ocomp_lib.obj -c comp_lib.c - -rcomplib.obj : comp_lib.c mw.h structs.h defs.h param.h - $(CC) $(CFLAGS) -DPRSS -orcomplib.obj -c comp_lib.c - -htime.obj : htime.c - $(CC) $(CFLAGS) -c htime.c - -hxgetaa.obj : hxgetaa.c altlib.h upam.h uascii.h - $(CC) $(CFLAGS) -c hxgetaa.c - -init_sw.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DSSEARCH -oinit_sw.obj initfa.c - -init_ssw.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DOSEARCH -oinit_ssw.obj initfa.c - -init_rss.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DPRSS -oinit_rss.obj initfa.c - -init_rfx.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DPRFX -oinit_rfx.obj initfa.c - -init_fa.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTA -oinit_fa.obj initfa.c - -init_ff.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTF -oinit_ff.obj initfa.c - -init_tf.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTF -DTFAST -oinit_tf.obj initfa.c - -init_fs.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTS -oinit_fs.obj initfa.c - -init_fm.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTM -oinit_fm.obj initfa.c - -init_tfs.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTS -DTFAST -oinit_tfs.obj initfa.c - -init_tfm.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTM -DTFAST -oinit_tfm.obj initfa.c - -init_tfa.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTA -DTFAST -oinit_tfa.obj initfa.c - -init_fx.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTX -oinit_fx.obj initfa.c - -init_tfx.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTX -DTFAST -oinit_tfx.obj initfa.c - -init_fy.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTY -oinit_fy.obj initfa.c - -init_tfy.obj : initfa.c defs.h param.h upam.h structs.h - $(CC) $(THR_CC) $(CFLAGS) -c -DFASTY -DTFAST -oinit_tfy.obj initfa.c - -doinit.obj : doinit.c defs.h param.h upam.h structs.h - $(CC) $(CFLAGS) -c doinit.c - -compacc.obj : compacc.c upam.h uascii.h param.h structs.h mw.h defs.h - $(CC) $(CFLAGS) -c compacc.c - -showbest.obj : mshowbest.c mw.h defs.h param.h structs.h mm_file.h - $(CC) $(CFLAGS) -oshowbest.obj -c mshowbest.c - -showrss.obj : showrss.c mw.h defs.h param.h structs.h - $(CC) $(CFLAGS) -c showrss.c - -showalig.obj : mshowalign.c mw.h defs.h structs.h param.h - $(CC) $(CFLAGS) -oshowalig.obj -c mshowalign.c - -c_dispn.obj : c_dispn.c defs.h structs.h param.h - $(CC) $(CFLAGS) -c c_dispn.c - -lib_sel.obj : lib_sel.c defs.h structs.h - $(CC) $(CFLAGS) -c lib_sel.c - -scaleswn.obj : scaleswn.c defs.h mw.h alt_parms.h - $(CC) $(CFLAGS) -c scaleswn.c - -scaleswt.obj : scaleswt.c defs.h mw.h alt_parms.h - $(CC) $(CFLAGS) -c scaleswt.c - -tatsta_s.obj : tatstats.c defs.h mw.h alt_parms.h tatstats.h - $(CC) $(CFLAGS) -DFASTS -otatsta_s.obj -c tatstats.c - -tatsttfs.obj : tatstats.c defs.h mw.h alt_parms.h tatstats.h - $(CC) $(CFLAGS) -DTFAST -DFASTS -otatsttfs.obj -c tatstats.c - -karlin.obj : karlin.c param.h - $(CC) $(CFLAGS) -c karlin.c - -scaleswg.obj : scaleswg.c defs.h mw.h alt_parms.h - $(CC) $(CFLAGS) -c scaleswg.c - -drop_nfa.obj : dropnfa.c param.h defs.h - $(CC) $(CFLAGS) -odrop_nfa.obj -c dropnfa.c - -drop_ff.obj : dropffa.c mw.h param.h defs.h - $(CC) $(CFLAGS) -odrop_ff.obj -c dropffa.c - -drop_tff.obj : dropffa.c mw.h param.h defs.h - $(CC) $(CFLAGS) -DTFAST -odrop_tff.obj -c dropffa.c - -drop_fx.obj : dropfx.c mw.h upam.h param.h defs.h - $(CC) $(CFLAGS) -DFASTX -odrop_fx.obj -c dropfx.c - -dropfs2.obj : dropfs2.c mw.h upam.h param.h defs.h tatstats.h - $(CC) $(CFLAGS) -DFASTS -c dropfs2.c - -droptfs2.obj : dropfs2.c mw.h upam.h param.h defs.h tatstats.h - $(CC) $(CFLAGS) -DTFAST -DFASTS -c -odroptfs2.obj dropfs2.c - -tdropfx.obj : dropfx.c mw.h upam.h param.h defs.h - $(CC) $(CFLAGS) -DTFAST -otdropfx.obj -c dropfx.c - -drop_fz.obj : dropfz2.c mw.h upam.h param.h defs.h aamap.h - $(CC) $(CFLAGS) -odrop_fz.obj -c dropfz2.c - -tdropfz.obj : dropfz2.c mw.h upam.h param.h defs.h aamap.h - $(CC) $(CFLAGS) -DTFAST -otdropfz.obj -c dropfz2.c - -dropnsw.obj : dropnsw.c mw.h upam.h param.h structs.h - $(CC) $(CFLAGS) -c dropnsw.c - -dropgsw.obj : dropgsw.c mw.h upam.h param.h structs.h - $(CC) $(CFLAGS) -c dropgsw.c - -dropnw.obj : dropnw.c mw.h upam.h param.h structs.h - $(CC) $(CFLAGS) -c dropnw.c - -llgetaa.obj : llgetaa.c altlib.h upam.h uascii.h - $(CC) $(CFLAGS) -DNOLIB -c llgetaa.c - -lgetlib.obj : nmgetlib.c altlib.h upam.h uascii.h - $(CC) $(CFLAGS) -olgetlib.obj -c nmgetlib.c - -regetlib.obj : re_getlib.c mw.h mm_file.h - $(CC) $(CFLAGS) -oregetlib.obj -c re_getlib.c - -getseq.obj : getseq.c defs.h uascii.h structs.h upam.h - $(CC) $(CFLAGS) -c getseq.c - -ncbl_lib.obj : ncbl_lib.c ncbl_head.h - $(CC) $(CFLAGS) -c ncbl_lib.c - -ncbl2_lib.obj : ncbl2_mlib.c ncbl2_head.h - $(CC) $(CFLAGS) -c ncbl2_mlib.c - -faatran.obj : faatran.c upam.h uascii.h - $(CC) $(CFLAGS) -c faatran.c - -url_subs.obj : url_subs.c structs.h param.h - $(CC) $(CFLAGS) -c url_subs.c - -nrand48.obj : nrand48.c - $(CC) $(CFLAGS) -c nrand48.c - -nrand.obj : nrand.c - $(CC) $(CFLAGS) -c nrand.c - -getopt.obj : getopt.c - $(CC) $(CFLAGS) -c getopt.c