X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fallclasses-noframe.html;h=628249def34b43e361c8605e189047f805bf94e8;hb=c30e285fec44c123abcd11eab235803516064897;hp=9143b8167b24fbd9fd8cfe7b654f1ce9acfba7d1;hpb=6582e82919b0d3697fe5e96f1be6a369f90a2d93;p=jabaws.git

diff --git a/website/dm_javadoc/allclasses-noframe.html b/website/dm_javadoc/allclasses-noframe.html
index 9143b81..628249d 100644
--- a/website/dm_javadoc/allclasses-noframe.html
+++ b/website/dm_javadoc/allclasses-noframe.html
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_21) on Thu Dec 09 12:00:29 GMT 2010 -->
+<!-- Generated by javadoc (build 1.6.0_24) on Fri Aug 12 14:32:04 BST 2011 -->
 <TITLE>
 All Classes
 </TITLE>
 
-<META NAME="date" CONTENT="2010-12-09">
+<META NAME="date" CONTENT="2011-08-12">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="stylesheet.css" TITLE="Style">
 
@@ -21,29 +21,93 @@ All Classes
 
 <TABLE BORDER="0" WIDTH="100%" SUMMARY="">
 <TR>
-<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>
+<TD NOWRAP><FONT CLASS="FrameItemFont"><A HREF="compbio/ws/client/AAConClient.html" title="class in compbio.ws.client">AAConClient</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/Align.html" title="class in compbio.data.msa.jaxws">Align</A>
+<BR>
+<A HREF="compbio/data/sequence/Alignment.html" title="class in compbio.data.sequence">Alignment</A>
 <BR>
 <A HREF="compbio/data/sequence/AlignmentMetadata.html" title="class in compbio.data.sequence">AlignmentMetadata</A>
 <BR>
-<A HREF="compbio/data/sequence/AnnotatedSequence.html" title="class in compbio.data.sequence">AnnotatedSequence</A>
+<A HREF="compbio/data/msa/jaxws/AlignResponse.html" title="class in compbio.data.msa.jaxws">AlignResponse</A>
 <BR>
-<A HREF="compbio/data/msa/Annotation.html" title="interface in compbio.data.msa"><I>Annotation</I></A>
+<A HREF="compbio/data/msa/jaxws/Analize.html" title="class in compbio.data.msa.jaxws">Analize</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/AnalizeResponse.html" title="class in compbio.data.msa.jaxws">AnalizeResponse</A>
 <BR>
 <A HREF="compbio/metadata/Argument.html" title="interface in compbio.metadata"><I>Argument</I></A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/CancelJob.html" title="class in compbio.data.msa.jaxws">CancelJob</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/CancelJobResponse.html" title="class in compbio.data.msa.jaxws">CancelJobResponse</A>
+<BR>
 <A HREF="compbio/metadata/ChunkHolder.html" title="class in compbio.metadata">ChunkHolder</A>
 <BR>
 <A HREF="compbio/data/sequence/ClustalAlignmentUtil.html" title="class in compbio.data.sequence">ClustalAlignmentUtil</A>
 <BR>
-<A HREF="compbio/data/sequence/DisemblResultAnnot.html" title="enum in compbio.data.sequence">DisemblResultAnnot</A>
+<A HREF="compbio/data/sequence/ConservationMethod.html" title="enum in compbio.data.sequence">ConservationMethod</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/CustomAlign.html" title="class in compbio.data.msa.jaxws">CustomAlign</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/CustomAlignResponse.html" title="class in compbio.data.msa.jaxws">CustomAlignResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/CustomAnalize.html" title="class in compbio.data.msa.jaxws">CustomAnalize</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/CustomAnalizeResponse.html" title="class in compbio.data.msa.jaxws">CustomAnalizeResponse</A>
+<BR>
+<A HREF="compbio/data/sequence/DisorderMethod.html" title="enum in compbio.data.sequence">DisorderMethod</A>
+<BR>
+<A HREF="compbio/data/sequence/FastaReader.html" title="class in compbio.data.sequence">FastaReader</A>
 <BR>
 <A HREF="compbio/data/sequence/FastaSequence.html" title="class in compbio.data.sequence">FastaSequence</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/GetAnnotation.html" title="class in compbio.data.msa.jaxws">GetAnnotation</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetAnnotationResponse.html" title="class in compbio.data.msa.jaxws">GetAnnotationResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetJobStatus.html" title="class in compbio.data.msa.jaxws">GetJobStatus</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetJobStatusResponse.html" title="class in compbio.data.msa.jaxws">GetJobStatusResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLastTested.html" title="class in compbio.data.msa.jaxws">GetLastTested</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOn.html" title="class in compbio.data.msa.jaxws">GetLastTestedOn</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLastTestedOnResponse.html" title="class in compbio.data.msa.jaxws">GetLastTestedOnResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLastTestedResponse.html" title="class in compbio.data.msa.jaxws">GetLastTestedResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLimit.html" title="class in compbio.data.msa.jaxws">GetLimit</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLimitResponse.html" title="class in compbio.data.msa.jaxws">GetLimitResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLimits.html" title="class in compbio.data.msa.jaxws">GetLimits</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetLimitsResponse.html" title="class in compbio.data.msa.jaxws">GetLimitsResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetPresets.html" title="class in compbio.data.msa.jaxws">GetPresets</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetPresetsResponse.html" title="class in compbio.data.msa.jaxws">GetPresetsResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetResult.html" title="class in compbio.data.msa.jaxws">GetResult</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetResultResponse.html" title="class in compbio.data.msa.jaxws">GetResultResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetRunnerOptions.html" title="class in compbio.data.msa.jaxws">GetRunnerOptions</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetRunnerOptionsResponse.html" title="class in compbio.data.msa.jaxws">GetRunnerOptionsResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetSupportedServices.html" title="class in compbio.data.msa.jaxws">GetSupportedServices</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/GetSupportedServicesResponse.html" title="class in compbio.data.msa.jaxws">GetSupportedServicesResponse</A>
+<BR>
 <A HREF="compbio/ws/client/IOHelper.html" title="class in compbio.ws.client">IOHelper</A>
 <BR>
-<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa"><I>JABAService</I></A>
+<A HREF="compbio/data/msa/jaxws/IsOperating.html" title="class in compbio.data.msa.jaxws">IsOperating</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/IsOperatingResponse.html" title="class in compbio.data.msa.jaxws">IsOperatingResponse</A>
 <BR>
-<A HREF="compbio/data/sequence/JalviewAnnotation.html" title="class in compbio.data.sequence">JalviewAnnotation</A>
+<A HREF="compbio/data/msa/JABAService.html" title="interface in compbio.data.msa"><I>JABAService</I></A>
 <BR>
 <A HREF="compbio/data/msa/JManagement.html" title="interface in compbio.data.msa"><I>JManagement</I></A>
 <BR>
@@ -53,54 +117,94 @@ All Classes
 <BR>
 <A HREF="compbio/metadata/JobSubmissionException.html" title="class in compbio.metadata">JobSubmissionException</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/JobSubmissionExceptionBean.html" title="class in compbio.data.msa.jaxws">JobSubmissionExceptionBean</A>
+<BR>
 <A HREF="compbio/ws/client/Jws2Client.html" title="class in compbio.ws.client">Jws2Client</A>
 <BR>
 <A HREF="compbio/metadata/Limit.html" title="class in compbio.metadata">Limit</A>
 <BR>
 <A HREF="compbio/metadata/LimitExceededException.html" title="class in compbio.metadata">LimitExceededException</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/LimitExceededExceptionBean.html" title="class in compbio.data.msa.jaxws">LimitExceededExceptionBean</A>
+<BR>
 <A HREF="compbio/metadata/LimitsManager.html" title="class in compbio.metadata">LimitsManager</A>
 <BR>
 <A HREF="compbio/data/msa/Metadata.html" title="interface in compbio.data.msa"><I>Metadata</I></A>
 <BR>
 <A HREF="compbio/ws/client/MetadataHelper.html" title="class in compbio.ws.client">MetadataHelper</A>
 <BR>
-<A HREF="compbio/data/sequence/Method.html" title="enum in compbio.data.sequence">Method</A>
-<BR>
 <A HREF="compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><I>MsaWS</I></A>
 <BR>
-<A HREF="compbio/data/sequence/MultiAnnotatedSequence.html" title="class in compbio.data.sequence">MultiAnnotatedSequence</A>
-<BR>
 <A HREF="compbio/metadata/Option.html" title="class in compbio.metadata">Option</A>
 <BR>
 <A HREF="compbio/metadata/Parameter.html" title="class in compbio.metadata">Parameter</A>
 <BR>
 <A HREF="compbio/metadata/Preset.html" title="class in compbio.metadata">Preset</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/PresetAlign.html" title="class in compbio.data.msa.jaxws">PresetAlign</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/PresetAlignResponse.html" title="class in compbio.data.msa.jaxws">PresetAlignResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/PresetAnalize.html" title="class in compbio.data.msa.jaxws">PresetAnalize</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/PresetAnalizeResponse.html" title="class in compbio.data.msa.jaxws">PresetAnalizeResponse</A>
+<BR>
 <A HREF="compbio/metadata/PresetManager.html" title="class in compbio.metadata">PresetManager</A>
 <BR>
 <A HREF="compbio/data/sequence/Program.html" title="enum in compbio.data.sequence">Program</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/PullExecStatistics.html" title="class in compbio.data.msa.jaxws">PullExecStatistics</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/PullExecStatisticsResponse.html" title="class in compbio.data.msa.jaxws">PullExecStatisticsResponse</A>
+<BR>
+<A HREF="compbio/data/sequence/Range.html" title="class in compbio.data.sequence">Range</A>
+<BR>
+<A HREF="compbio/data/msa/RegistryWS.html" title="interface in compbio.data.msa"><I>RegistryWS</I></A>
+<BR>
 <A HREF="compbio/metadata/ResultNotAvailableException.html" title="class in compbio.metadata">ResultNotAvailableException</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/ResultNotAvailableExceptionBean.html" title="class in compbio.data.msa.jaxws">ResultNotAvailableExceptionBean</A>
+<BR>
 <A HREF="compbio/metadata/RunnerConfig.html" title="class in compbio.metadata">RunnerConfig</A>
 <BR>
 <A HREF="compbio/data/sequence/Score.html" title="class in compbio.data.sequence">Score</A>
 <BR>
+<A HREF="compbio/data/sequence/ScoreManager.html" title="class in compbio.data.sequence">ScoreManager</A>
+<BR>
+<A HREF="compbio/data/sequence/ScoreManager.ScoreHolder.html" title="class in compbio.data.sequence">ScoreManager.ScoreHolder</A>
+<BR>
+<A HREF="compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><I>SequenceAnnotation</I></A>
+<BR>
 <A HREF="compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence">SequenceUtil</A>
 <BR>
 <A HREF="compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>
 <BR>
+<A HREF="compbio/ws/client/ServicesUtil.html" title="class in compbio.ws.client">ServicesUtil</A>
+<BR>
+<A HREF="compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence">SMERFSConstraints</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/TestAllServices.html" title="class in compbio.data.msa.jaxws">TestAllServices</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/TestAllServicesResponse.html" title="class in compbio.data.msa.jaxws">TestAllServicesResponse</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/TestService.html" title="class in compbio.data.msa.jaxws">TestService</A>
+<BR>
+<A HREF="compbio/data/msa/jaxws/TestServiceResponse.html" title="class in compbio.data.msa.jaxws">TestServiceResponse</A>
+<BR>
 <A HREF="compbio/data/sequence/UnknownFileFormatException.html" title="class in compbio.data.sequence">UnknownFileFormatException</A>
 <BR>
 <A HREF="compbio/metadata/UnsupportedRuntimeException.html" title="class in compbio.metadata">UnsupportedRuntimeException</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/UnsupportedRuntimeExceptionBean.html" title="class in compbio.data.msa.jaxws">UnsupportedRuntimeExceptionBean</A>
+<BR>
 <A HREF="compbio/metadata/ValueConstrain.html" title="class in compbio.metadata">ValueConstrain</A>
 <BR>
 <A HREF="compbio/metadata/ValueConstrain.Type.html" title="enum in compbio.metadata">ValueConstrain.Type</A>
 <BR>
 <A HREF="compbio/metadata/WrongParameterException.html" title="class in compbio.metadata">WrongParameterException</A>
 <BR>
+<A HREF="compbio/data/msa/jaxws/WrongParameterExceptionBean.html" title="class in compbio.data.msa.jaxws">WrongParameterExceptionBean</A>
+<BR>
 <A HREF="compbio/ws/client/WSTester.html" title="class in compbio.ws.client">WSTester</A>
 <BR>
 </FONT></TD>
