X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2FUnknownFileFormatException.html;h=e4f0907afd807990dbf1ffa98e92b48e76d47f17;hb=5f582fe1adafda5df440d1d1b3955b2bca7fbc88;hp=e694f7985c6587f64a94e5217abe1b53b366f39d;hpb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;p=jabaws.git

diff --git a/website/dm_javadoc/compbio/data/sequence/UnknownFileFormatException.html b/website/dm_javadoc/compbio/data/sequence/UnknownFileFormatException.html
index e694f79..e4f0907 100644
--- a/website/dm_javadoc/compbio/data/sequence/UnknownFileFormatException.html
+++ b/website/dm_javadoc/compbio/data/sequence/UnknownFileFormatException.html
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_21) on Thu Nov 18 15:38:37 GMT 2010 -->
+<!-- Generated by javadoc (build 1.6.0_21) on Tue Dec 21 18:32:59 GMT 2010 -->
 <TITLE>
 UnknownFileFormatException
 </TITLE>
 
-<META NAME="date" CONTENT="2010-11-18">
+<META NAME="date" CONTENT="2010-12-21">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">
 
@@ -55,7 +55,7 @@ function windowTitle()
 
 <TR>
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
-&nbsp;<A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;
+&nbsp;<A HREF="../../../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;
 &nbsp;NEXT CLASS</FONT></TD>
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
   <A HREF="../../../index.html?compbio/data/sequence/UnknownFileFormatException.html" target="_top"><B>FRAMES</B></A>  &nbsp;
@@ -92,17 +92,17 @@ compbio.data.sequence</FONT>
 <BR>
 Class UnknownFileFormatException</H2>
 <PRE>
-java.lang.Object
-  <IMG SRC="../../../resources/inherit.gif" ALT="extended by ">java.lang.Throwable
-      <IMG SRC="../../../resources/inherit.gif" ALT="extended by ">java.lang.Exception
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
+  <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">java.lang.Throwable</A>
+      <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">java.lang.Exception</A>
           <IMG SRC="../../../resources/inherit.gif" ALT="extended by "><B>compbio.data.sequence.UnknownFileFormatException</B>
 </PRE>
 <DL>
-<DT><B>All Implemented Interfaces:</B> <DD>java.io.Serializable</DD>
+<DT><B>All Implemented Interfaces:</B> <DD><A HREF="http://java.sun.com/javase/6/docs/api/java/io/Serializable.html?is-external=true" title="class or interface in java.io">Serializable</A></DD>
 </DL>
 <HR>
 <DL>
-<DT><PRE>public class <B>UnknownFileFormatException</B><DT>extends java.lang.Exception</DL>
+<DT><PRE>public class <B>UnknownFileFormatException</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Exception.html?is-external=true" title="class or interface in java.lang">Exception</A></DL>
 </PRE>
 
 <P>
@@ -127,27 +127,27 @@ java.lang.Object
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.io.File, java.lang.Throwable)">UnknownFileFormatException</A></B>(java.io.File&nbsp;file,
-                           java.lang.Throwable&nbsp;cause)</CODE>
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.io.File, java.lang.Throwable)">UnknownFileFormatException</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/File.html?is-external=true" title="class or interface in java.io">File</A>&nbsp;file,
+                           <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A>&nbsp;cause)</CODE>
 
 <BR>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.lang.String)">UnknownFileFormatException</A></B>(java.lang.String&nbsp;message)</CODE>
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.lang.String)">UnknownFileFormatException</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;message)</CODE>
 
 <BR>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.lang.String, java.lang.Throwable)">UnknownFileFormatException</A></B>(java.lang.String&nbsp;message,
-                           java.lang.Throwable&nbsp;cause)</CODE>
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.lang.String, java.lang.Throwable)">UnknownFileFormatException</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;message,
+                           <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A>&nbsp;cause)</CODE>
 
 <BR>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.lang.Throwable)">UnknownFileFormatException</A></B>(java.lang.Throwable&nbsp;cause)</CODE>
+<TD><CODE><B><A HREF="../../../compbio/data/sequence/UnknownFileFormatException.html#UnknownFileFormatException(java.lang.Throwable)">UnknownFileFormatException</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A>&nbsp;cause)</CODE>
 
 <BR>
 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
@@ -166,19 +166,19 @@ java.lang.Object
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Throwable"><!-- --></A>
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Throwable</B></TH>
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A></B></TH>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE>fillInStackTrace, getCause, getLocalizedMessage, getMessage, getStackTrace, initCause, printStackTrace, printStackTrace, printStackTrace, setStackTrace, toString</CODE></TD>
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#fillInStackTrace()" title="class or interface in java.lang">fillInStackTrace</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#getCause()" title="class or interface in java.lang">getCause</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#getLocalizedMessage()" title="class or interface in java.lang">getLocalizedMessage</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#getMessage()" title="class or interface in java.lang">getMessage</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#getStackTrace()" title="class or interface in java.lang">getStackTrace</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#initCause(java.lang.Throwable)" title="class or interface in java.lang">initCause</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#printStackTrace()" title="class or interface in java.lang">printStackTrace</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#printStackTrace(java.io.PrintStream)" title="class or interface in java.lang">printStackTrace</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#printStackTrace(java.io.PrintWriter)" title="class or interface in java.lang">printStackTrace</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#setStackTrace(java.lang.StackTraceElement[])" title="class or interface in java.lang">setStackTrace</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true#toString()" title="class or interface in java.lang">toString</A></CODE></TD>
 </TR>
 </TABLE>
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE>clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait</CODE></TD>
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
 </TR>
 </TABLE>
 &nbsp;
@@ -205,8 +205,8 @@ public <B>UnknownFileFormatException</B>()</PRE>
 <A NAME="UnknownFileFormatException(java.io.File, java.lang.Throwable)"><!-- --></A><H3>
 UnknownFileFormatException</H3>
 <PRE>
-public <B>UnknownFileFormatException</B>(java.io.File&nbsp;file,
-                                  java.lang.Throwable&nbsp;cause)</PRE>
+public <B>UnknownFileFormatException</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/io/File.html?is-external=true" title="class or interface in java.io">File</A>&nbsp;file,
+                                  <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A>&nbsp;cause)</PRE>
 <DL>
 </DL>
 <HR>
@@ -214,8 +214,8 @@ public <B>UnknownFileFormatException</B>(java.io.File&nbsp;file,
 <A NAME="UnknownFileFormatException(java.lang.String, java.lang.Throwable)"><!-- --></A><H3>
 UnknownFileFormatException</H3>
 <PRE>
-public <B>UnknownFileFormatException</B>(java.lang.String&nbsp;message,
-                                  java.lang.Throwable&nbsp;cause)</PRE>
+public <B>UnknownFileFormatException</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;message,
+                                  <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A>&nbsp;cause)</PRE>
 <DL>
 </DL>
 <HR>
@@ -223,7 +223,7 @@ public <B>UnknownFileFormatException</B>(java.lang.String&nbsp;message,
 <A NAME="UnknownFileFormatException(java.lang.String)"><!-- --></A><H3>
 UnknownFileFormatException</H3>
 <PRE>
-public <B>UnknownFileFormatException</B>(java.lang.String&nbsp;message)</PRE>
+public <B>UnknownFileFormatException</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;message)</PRE>
 <DL>
 </DL>
 <HR>
@@ -231,7 +231,7 @@ public <B>UnknownFileFormatException</B>(java.lang.String&nbsp;message)</PRE>
 <A NAME="UnknownFileFormatException(java.lang.Throwable)"><!-- --></A><H3>
 UnknownFileFormatException</H3>
 <PRE>
-public <B>UnknownFileFormatException</B>(java.lang.Throwable&nbsp;cause)</PRE>
+public <B>UnknownFileFormatException</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Throwable.html?is-external=true" title="class or interface in java.lang">Throwable</A>&nbsp;cause)</PRE>
 <DL>
 </DL>
 <!-- ========= END OF CLASS DATA ========= -->
@@ -265,7 +265,7 @@ public <B>UnknownFileFormatException</B>(java.lang.Throwable&nbsp;cause)</PRE>
 
 <TR>
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
-&nbsp;<A HREF="../../../compbio/data/sequence/SequenceUtil.html" title="class in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;
+&nbsp;<A HREF="../../../compbio/data/sequence/SMERFSConstraints.html" title="enum in compbio.data.sequence"><B>PREV CLASS</B></A>&nbsp;
 &nbsp;NEXT CLASS</FONT></TD>
 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
   <A HREF="../../../index.html?compbio/data/sequence/UnknownFileFormatException.html" target="_top"><B>FRAMES</B></A>  &nbsp;
