X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-summary.html;h=8bc97dc17cf432092747bcb5c0da2b256b6dc099;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=1609e36470cc82a6dfe62baa23634998b5ac789a;hpb=02ace2e4cf6d29a70be3dd799f84e3f14333cdbb;p=jabaws.git
diff --git a/website/dm_javadoc/compbio/data/sequence/package-summary.html b/website/dm_javadoc/compbio/data/sequence/package-summary.html
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@@ -2,12 +2,12 @@
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compbio.data.sequence
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@@ -55,7 +55,7 @@ function windowTitle()
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@@ -108,10 +108,30 @@ A data model for multiple sequence alignment web services and utility methods
| Tools to read and write clustal formated files |
+| FastaReader |
+Reads files with FASTA formatted sequences. |
+
+
| FastaSequence |
A FASTA formatted sequence. |
+| Range |
+ |
+
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+| Score |
+A value class for AACon annotation results storage. |
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+| ScoreManager |
+ |
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+| ScoreManager.ScoreHolder |
+ |
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| SequenceUtil |
Utility class for operations on sequences |
@@ -126,9 +146,21 @@ A data model for multiple sequence alignment web services and utility methods
Enum Summary
+| ConservationMethod |
+Enumeration listing of all the supported methods. |
+
+
+| DisorderMethod |
+ |
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| Program |
The list of programmes that can produce alignments |
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+| SMERFSConstraints |
+Enumeration defining two constraints for SMERFS columns score calculation. |
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@@ -195,7 +227,7 @@ A data model for multiple sequence alignment web services and utility methods
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