X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-summary.html;h=deb2f7702fbc35a9606d58ff2e00ac448482dff7;hb=5f582fe1adafda5df440d1d1b3955b2bca7fbc88;hp=1609e36470cc82a6dfe62baa23634998b5ac789a;hpb=02ace2e4cf6d29a70be3dd799f84e3f14333cdbb;p=jabaws.git
diff --git a/website/dm_javadoc/compbio/data/sequence/package-summary.html b/website/dm_javadoc/compbio/data/sequence/package-summary.html
index 1609e36..deb2f77 100644
--- a/website/dm_javadoc/compbio/data/sequence/package-summary.html
+++ b/website/dm_javadoc/compbio/data/sequence/package-summary.html
@@ -2,12 +2,12 @@
-
+
compbio.data.sequence
-
+
@@ -104,6 +104,10 @@ A data model for multiple sequence alignment web services and utility methods
| Alignment metadata e.g. |
+| AnnotatedSequence |
+ |
+
+
| ClustalAlignmentUtil |
Tools to read and write clustal formated files |
@@ -112,6 +116,14 @@ A data model for multiple sequence alignment web services and utility methods
A FASTA formatted sequence. |
+| MultiAnnotatedSequence<T extends Enum<T>> |
+TODO complete |
+
+
+| Score |
+A value class for AACon annotation results storage |
+
+
| SequenceUtil |
Utility class for operations on sequences |
@@ -126,9 +138,21 @@ A data model for multiple sequence alignment web services and utility methods
Enum Summary
+| ConservationMethod |
+Enumeration listing of all the supported methods. |
+
+
+| DisemblResultAnnot |
+ |
+
+
| Program |
The list of programmes that can produce alignments |
+
+| SMERFSConstraints |
+Enumeration defining two constraints for SMERFS columns score calculation. |
+