X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-use.html;h=898f6cac81517050f5111f3a9f76b900337e2c1e;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=11573bac344ee9b94e755ab8c97fd660a7db0d9a;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/dm_javadoc/compbio/data/sequence/package-use.html b/website/dm_javadoc/compbio/data/sequence/package-use.html index 11573ba..898f6ca 100644 --- a/website/dm_javadoc/compbio/data/sequence/package-use.html +++ b/website/dm_javadoc/compbio/data/sequence/package-use.html @@ -2,12 +2,12 @@ - + Uses of Package compbio.data.sequence - + @@ -94,6 +94,10 @@ Packages that use Web Service interfaces for JAva Bioinformatics Analysis Web Services.  +compbio.data.msa.jaxws +   + + compbio.data.sequence A data model for multiple sequence alignment web services and utility methods that work on the objects of this model.  @@ -124,6 +128,39 @@ Classes in compbio
          A FASTA formatted sequence. + +ScoreManager + +
+            + + +  +

+ + + + + + + + + + + + + +
+Classes in compbio.data.sequence used by compbio.data.msa.jaxws
Alignment + +
+          Multiple sequence alignment.
FastaSequence + +
+          A FASTA formatted sequence.
ScoreManager + +
+           
 

@@ -146,6 +183,18 @@ Classes in compbio           Alignment metadata e.g. +ConservationMethod + +
+          Enumeration listing of all the supported methods. + + +DisorderMethod + +
+            + + FastaSequence
@@ -158,6 +207,36 @@ Classes in compbio           The list of programmes that can produce alignments +Range + +
+            + + +Score + +
+          A value class for AACon annotation results storage. + + +ScoreManager + +
+            + + +ScoreManager.ScoreHolder + +
+            + + +SMERFSConstraints + +
+          Enumeration defining two constraints for SMERFS columns score calculation. + + UnknownFileFormatException