X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fdata%2Fsequence%2Fpackage-use.html;h=898f6cac81517050f5111f3a9f76b900337e2c1e;hb=bc3346bd7c1c518fad867d4c60a53779e7516588;hp=11573bac344ee9b94e755ab8c97fd660a7db0d9a;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/dm_javadoc/compbio/data/sequence/package-use.html b/website/dm_javadoc/compbio/data/sequence/package-use.html index 11573ba..898f6ca 100644 --- a/website/dm_javadoc/compbio/data/sequence/package-use.html +++ b/website/dm_javadoc/compbio/data/sequence/package-use.html @@ -2,12 +2,12 @@
- ++Classes in compbio.data.sequence used by compbio.data.msa.jaxws | +|
---|---|
Alignment
+
+ + Multiple sequence alignment. |
+|
FastaSequence
+
+ + A FASTA formatted sequence. |
+|
ScoreManager
+
+ + |
+
@@ -146,6 +183,18 @@ Classes in compbio
Alignment metadata e.g.
+
+ConservationMethod
+
+
+
+ Enumeration listing of all the supported methods.
+
+DisorderMethod
+
+
+
+
FastaSequence
@@ -158,6 +207,36 @@ Classes in compbio
The list of programmes that can produce alignments
+
+Range
+
+
+
+
+
+Score
+
+
+
+ A value class for AACon annotation results storage.
+
+ScoreManager
+
+
+
+
+
+ScoreManager.ScoreHolder
+
+
+
+
+
+SMERFSConstraints
+
+
+
+ Enumeration defining two constraints for SMERFS columns score calculation.
UnknownFileFormatException