X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fmetadata%2Fpackage-use.html;h=690f14a62dbb643d16519d8f8ab31b5dad09b807;hb=5f582fe1adafda5df440d1d1b3955b2bca7fbc88;hp=1b8c1e2be69d164c50a3c2e421602d7167484151;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/dm_javadoc/compbio/metadata/package-use.html b/website/dm_javadoc/compbio/metadata/package-use.html index 1b8c1e2..690f14a 100644 --- a/website/dm_javadoc/compbio/metadata/package-use.html +++ b/website/dm_javadoc/compbio/metadata/package-use.html @@ -2,12 +2,12 @@
- ++Classes in compbio.metadata used by compbio.data.msa | +|
---|---|
ChunkHolder
+
+ + Represents a chunk of a string data together with the position in a file for + the next read operation. |
+|
JobStatus
+
+ + The status of the job. |
+|
JobSubmissionException
+
+ + Exception for generic problems with JobSubmission it is often thrown as a + wrapper for the lower level exceptions like IOException or DrmaaException. |
+|
Limit
+
+ + A value object containing a maximum number of sequences and a maximum average + sequence length for a preset. |
+|
LimitExceededException
+
+ + This exception is thrown if the task larger in size that the limit that + applies to the calculation. |
+|
LimitsManager
+
+ + A collection of Limits |
+|
Option
+
+ + Command line option/flag or multiple exclusive options with no value. |
+|
Preset
+
+ + Collection of Options and Parameters with their values |
+|
PresetManager
+
+ + Collection of presets and methods to manipulate them @see Preset |
+|
ResultNotAvailableException
+
+ + ResultNotAvailableException is thrown wherever the results of the calculation + cannot be obtained. |
+|
RunnerConfig
+
+ + The list of Parameter s and Option s supported by executable. |
+|
UnsupportedRuntimeException
+
+ + Indicates that the server could not execute native executables. |
+|
WrongParameterException
+
+ + WrongParameterException is thrown wherever the RunnerConfig object
+ does not match the actual runnable or then attempting to set the value of
+ Argument to invalid value. |
+
LimitExceededException
- Thrown if the task larger in size that the limit that applies to the - calculation. |
+ This exception is thrown if the task larger in size that the limit that
+ applies to the calculation.
|
Option @@ -147,7 +245,7 @@ Classes in compbio.metadat | Parameter
- A single value containing option supported by the web service e.g. |
+ A single value containing an option supported by the web service e.g.
Preset |