X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Fcompbio%2Fmetadata%2Fpackage-use.html;h=690f14a62dbb643d16519d8f8ab31b5dad09b807;hb=5f582fe1adafda5df440d1d1b3955b2bca7fbc88;hp=1b8c1e2be69d164c50a3c2e421602d7167484151;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/dm_javadoc/compbio/metadata/package-use.html b/website/dm_javadoc/compbio/metadata/package-use.html index 1b8c1e2..690f14a 100644 --- a/website/dm_javadoc/compbio/metadata/package-use.html +++ b/website/dm_javadoc/compbio/metadata/package-use.html @@ -2,12 +2,12 @@ - + Uses of Package compbio.metadata - + @@ -90,6 +90,10 @@ function windowTitle() Packages that use compbio.metadata +compbio.data.msa +Web Service interfaces for JAva Bioinformatics Analysis Web Services.  + + compbio.metadata A meta-data model for multiple sequence alignment web services Classes in this package have no dependencies to other sources in the project.  @@ -97,6 +101,100 @@ Packages that use compbio.  

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Classes in compbio.metadata used by compbio.data.msa
ChunkHolder + +
+          Represents a chunk of a string data together with the position in a file for + the next read operation.
JobStatus + +
+          The status of the job.
JobSubmissionException + +
+          Exception for generic problems with JobSubmission it is often thrown as a + wrapper for the lower level exceptions like IOException or DrmaaException.
Limit + +
+          A value object containing a maximum number of sequences and a maximum average + sequence length for a preset.
LimitExceededException + +
+          This exception is thrown if the task larger in size that the limit that + applies to the calculation.
LimitsManager + +
+          A collection of Limits
Option + +
+          Command line option/flag or multiple exclusive options with no value.
Preset + +
+          Collection of Options and Parameters with their values
PresetManager + +
+          Collection of presets and methods to manipulate them @see Preset
ResultNotAvailableException + +
+          ResultNotAvailableException is thrown wherever the results of the calculation + cannot be obtained.
RunnerConfig + +
+          The list of Parameters and Options supported by executable.
UnsupportedRuntimeException + +
+          Indicates that the server could not execute native executables.
WrongParameterException + +
+          WrongParameterException is thrown wherever the RunnerConfig object + does not match the actual runnable or then attempting to set the value of + Argument to invalid value.
+  +

@@ -134,8 +232,8 @@ Classes in compbio.metadat +          This exception is thrown if the task larger in size that the limit that + applies to the calculation. +          A single value containing an option supported by the web service e.g.
LimitExceededException
-          Thrown if the task larger in size that the limit that applies to the - calculation.
Option @@ -147,7 +245,7 @@ Classes in compbio.metadat Parameter
-          A single value containing option supported by the web service e.g.
Preset