X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-1.html;h=d6d9139f30edeb00d30d6685df813b8f32f7a370;hb=5f582fe1adafda5df440d1d1b3955b2bca7fbc88;hp=e2ae88f9f67c05de68e7976961eca41810a8d051;hpb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;p=jabaws.git diff --git a/website/dm_javadoc/index-files/index-1.html b/website/dm_javadoc/index-files/index-1.html index e2ae88f..d6d9139 100644 --- a/website/dm_javadoc/index-files/index-1.html +++ b/website/dm_javadoc/index-files/index-1.html @@ -2,12 +2,12 @@ - + A-Index - + @@ -85,6 +85,9 @@ function windowTitle()
AA - Static variable in class compbio.data.sequence.SequenceUtil
Valid Amino acids +
addAnnotation(T, ArrayList<Float>) - +Method in class compbio.data.sequence.MultiAnnotatedSequence +
 
addOption(Option<T>) - Method in class compbio.metadata.RunnerConfig
Adds Option to the internal list of options @@ -118,7 +121,16 @@ Static variable in class compbio.data.sequence.AMBIGUOUS_NUCLEOTIDE - Static variable in class compbio.data.sequence.SequenceUtil
Ambiguous nucleotide -
Argument<T> - Interface in compbio.metadata
An unmodifiable view for the options and parameters, with one exception - it +
analize(List<FastaSequence>) - +Method in interface compbio.data.msa.Annotation +
Analyse the sequences. +
AnnotatedSequence - Class in compbio.data.sequence
 
AnnotatedSequence(String, String, float[]) - +Constructor for class compbio.data.sequence.AnnotatedSequence +
  +
AnnotatedSequence(FastaSequence, float[]) - +Constructor for class compbio.data.sequence.AnnotatedSequence +
  +
Annotation<T> - Interface in compbio.data.msa
Interface for tools that results to one or more annotation to sequence(s)
Argument<T> - Interface in compbio.metadata
An unmodifiable view for the options and parameters, with one exception - it allows to set a value