X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-1.html;h=d6d9139f30edeb00d30d6685df813b8f32f7a370;hb=5f582fe1adafda5df440d1d1b3955b2bca7fbc88;hp=e2ae88f9f67c05de68e7976961eca41810a8d051;hpb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;p=jabaws.git
diff --git a/website/dm_javadoc/index-files/index-1.html b/website/dm_javadoc/index-files/index-1.html
index e2ae88f..d6d9139 100644
--- a/website/dm_javadoc/index-files/index-1.html
+++ b/website/dm_javadoc/index-files/index-1.html
@@ -2,12 +2,12 @@
-
+
A-Index
-
+
@@ -85,6 +85,9 @@ function windowTitle()
AA -
Static variable in class compbio.data.sequence.SequenceUtil
Valid Amino acids
+ addAnnotation(T, ArrayList<Float>) -
+Method in class compbio.data.sequence.MultiAnnotatedSequence
+
addOption(Option<T>) -
Method in class compbio.metadata.RunnerConfig
Adds Option to the internal list of options
@@ -118,7 +121,16 @@ Static variable in class compbio.data.sequence.AMBIGUOUS_NUCLEOTIDE -
Static variable in class compbio.data.sequence.SequenceUtil
Ambiguous nucleotide
- Argument <T > - Interface in compbio.metadata An unmodifiable view for the options and parameters, with one exception - it
+ analize(List<FastaSequence>) -
+Method in interface compbio.data.msa.Annotation
+Analyse the sequences.
+ AnnotatedSequence - Class in compbio.data.sequence AnnotatedSequence(String, String, float[]) -
+Constructor for class compbio.data.sequence.AnnotatedSequence
+
+ AnnotatedSequence(FastaSequence, float[]) -
+Constructor for class compbio.data.sequence.AnnotatedSequence
+
+ Annotation <T > - Interface in compbio.data.msa Interface for tools that results to one or more annotation to sequence(s) Argument <T > - Interface in compbio.metadata An unmodifiable view for the options and parameters, with one exception - it
allows to set a value