X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-15.html;h=fe911ae6169b96f040837292d219d8381cd8620a;hb=faac303bf9ad8c17b71a55d23b7a2c0a9e6e2efa;hp=6347061632f5072fcec698e851af728678e5c9de;hpb=02ace2e4cf6d29a70be3dd799f84e3f14333cdbb;p=jabaws.git
diff --git a/website/dm_javadoc/index-files/index-15.html b/website/dm_javadoc/index-files/index-15.html
index 6347061..fe911ae 100644
--- a/website/dm_javadoc/index-files/index-15.html
+++ b/website/dm_javadoc/index-files/index-15.html
@@ -2,12 +2,12 @@
-
+
R-Index
-
+
@@ -82,16 +82,71 @@ function windowTitle()
R
+- Range - Class in compbio.data.sequence
-
- Range(int, int) -
+Constructor for class compbio.data.sequence.Range
+
-
+
- Range(String[]) -
+Constructor for class compbio.data.sequence.Range
+
-
+
- readAAConResults(InputStream) -
+Static method in class compbio.data.sequence.SequenceUtil
+
- Read AACon result with no alignment files.
- readClustalFile(InputStream) -
Static method in class compbio.data.sequence.ClustalAlignmentUtil
- Read Clustal formatted alignment.
- readClustalFile(File) -
Static method in class compbio.data.sequence.ClustalAlignmentUtil
-
+
- readDisembl(InputStream) -
+Static method in class compbio.data.sequence.SequenceUtil
+
- > Foobar_dundeefriends
+
+ # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343
+
+ # REM465 355-368
+
+ # HOTLOOPS 190-204
+
+ # RESIDUE COILS REM465 HOTLOOPS
+
+ M 0.86010 0.88512 0.37094
+
+ T 0.79983 0.85864 0.44331
+
+ >Next Sequence name
- readFasta(InputStream) -
Static method in class compbio.data.sequence.SequenceUtil
- Reads fasta sequences from inStream into the list of FastaSequence
objects
+
- readGlobPlot(InputStream) -
+Static method in class compbio.data.sequence.SequenceUtil
+
- > Foobar_dundeefriends
+
+ # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343
+
+ # REM465 355-368
+
+ # HOTLOOPS 190-204
+
+ # RESIDUE COILS REM465 HOTLOOPS
+
+ M 0.86010 0.88512 0.37094
+
+ T 0.79983 0.85864 0.44331
+
+ >Next Sequence name
+
- readIUPred(File) -
+Static method in class compbio.data.sequence.SequenceUtil
+
- Read IUPred output
+
- readJRonn(File) -
+Static method in class compbio.data.sequence.SequenceUtil
+
-
+
- readJRonn(InputStream) -
+Static method in class compbio.data.sequence.SequenceUtil
+
- Reader for JRonn horizontal file format
+
- RegistryWS - Interface in compbio.data.msa
- JABAWS services registry
- remove() -
+Method in class compbio.data.sequence.FastaReader
+
- Not implemented
- removeArgument(String) -
Method in class compbio.metadata.RunnerConfig
- Removes the argument
Argument
if found.
@@ -110,6 +165,9 @@ Constructor for exception compbio.metadata.ResultNotAvailableException(String, Throwable) -
Constructor for exception compbio.metadata.ResultNotAvailableException
-
+
- ResultNotAvailableExceptionBean - Class in compbio.data.msa.jaxws
- This class was generated by the JAX-WS RI.
- ResultNotAvailableExceptionBean() -
+Constructor for class compbio.data.msa.jaxws.ResultNotAvailableExceptionBean
+
-
- RunnerConfig<T> - Class in compbio.metadata
- The list of
Parameter
s and Option
s supported by executable. - RunnerConfig() -
Constructor for class compbio.metadata.RunnerConfig
-