X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-15.html;h=fe911ae6169b96f040837292d219d8381cd8620a;hb=faac303bf9ad8c17b71a55d23b7a2c0a9e6e2efa;hp=d9cad20851c2492bde3e8f0d37d4ec9896f35777;hpb=14a41b0acd5d808ae1cdd8ecc82c85b4d3329b72;p=jabaws.git
diff --git a/website/dm_javadoc/index-files/index-15.html b/website/dm_javadoc/index-files/index-15.html
index d9cad20..fe911ae 100644
--- a/website/dm_javadoc/index-files/index-15.html
+++ b/website/dm_javadoc/index-files/index-15.html
@@ -2,12 +2,12 @@
-
+
R-Index
-
+
@@ -82,6 +82,12 @@ function windowTitle()
R
+Range - Class in compbio.data.sequence Range(int, int) -
+Constructor for class compbio.data.sequence.Range
+
+ Range(String[]) -
+Constructor for class compbio.data.sequence.Range
+
readAAConResults(InputStream) -
Static method in class compbio.data.sequence.SequenceUtil
Read AACon result with no alignment files.
@@ -91,16 +97,56 @@ Static method in class compbio.data.sequence.readClustalFile(File) -
Static method in class compbio.data.sequence.ClustalAlignmentUtil
+ readDisembl(InputStream) -
+Static method in class compbio.data.sequence.SequenceUtil
+> Foobar_dundeefriends
+
+ # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343
+
+ # REM465 355-368
+
+ # HOTLOOPS 190-204
+
+ # RESIDUE COILS REM465 HOTLOOPS
+
+ M 0.86010 0.88512 0.37094
+
+ T 0.79983 0.85864 0.44331
+
+ >Next Sequence name
readFasta(InputStream) -
Static method in class compbio.data.sequence.SequenceUtil
Reads fasta sequences from inStream into the list of FastaSequence
objects
+ readGlobPlot(InputStream) -
+Static method in class compbio.data.sequence.SequenceUtil
+> Foobar_dundeefriends
+
+ # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343
+
+ # REM465 355-368
+
+ # HOTLOOPS 190-204
+
+ # RESIDUE COILS REM465 HOTLOOPS
+
+ M 0.86010 0.88512 0.37094
+
+ T 0.79983 0.85864 0.44331
+
+ >Next Sequence name
+ readIUPred(File) -
+Static method in class compbio.data.sequence.SequenceUtil
+Read IUPred output
readJRonn(File) -
Static method in class compbio.data.sequence.SequenceUtil
readJRonn(InputStream) -
Static method in class compbio.data.sequence.SequenceUtil
Reader for JRonn horizontal file format
+ RegistryWS - Interface in compbio.data.msa JABAWS services registry remove() -
+Method in class compbio.data.sequence.FastaReader
+Not implemented
removeArgument(String) -
Method in class compbio.metadata.RunnerConfig
Removes the argument Argument
if found.
@@ -119,6 +165,9 @@ Constructor for exception compbio.metadata.ResultNotAvailableException(String, Throwable) -
Constructor for exception compbio.metadata.ResultNotAvailableException
+ ResultNotAvailableExceptionBean - Class in compbio.data.msa.jaxws This class was generated by the JAX-WS RI. ResultNotAvailableExceptionBean() -
+Constructor for class compbio.data.msa.jaxws.ResultNotAvailableExceptionBean
+
RunnerConfig <T > - Class in compbio.metadata The list of Parameter
s and Option
s supported by executable. RunnerConfig() -
Constructor for class compbio.metadata.RunnerConfig