X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-15.html;h=fe911ae6169b96f040837292d219d8381cd8620a;hb=faac303bf9ad8c17b71a55d23b7a2c0a9e6e2efa;hp=d9cad20851c2492bde3e8f0d37d4ec9896f35777;hpb=14a41b0acd5d808ae1cdd8ecc82c85b4d3329b72;p=jabaws.git diff --git a/website/dm_javadoc/index-files/index-15.html b/website/dm_javadoc/index-files/index-15.html index d9cad20..fe911ae 100644 --- a/website/dm_javadoc/index-files/index-15.html +++ b/website/dm_javadoc/index-files/index-15.html @@ -2,12 +2,12 @@ - + R-Index - + @@ -82,6 +82,12 @@ function windowTitle()

R

+
Range - Class in compbio.data.sequence
 
Range(int, int) - +Constructor for class compbio.data.sequence.Range +
  +
Range(String[]) - +Constructor for class compbio.data.sequence.Range +
 
readAAConResults(InputStream) - Static method in class compbio.data.sequence.SequenceUtil
Read AACon result with no alignment files. @@ -91,16 +97,56 @@ Static method in class compbio.data.sequence.readClustalFile(File) - Static method in class compbio.data.sequence.ClustalAlignmentUtil
  +
readDisembl(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +
> Foobar_dundeefriends + + # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 + + # REM465 355-368 + + # HOTLOOPS 190-204 + + # RESIDUE COILS REM465 HOTLOOPS + + M 0.86010 0.88512 0.37094 + + T 0.79983 0.85864 0.44331 + + >Next Sequence name
readFasta(InputStream) - Static method in class compbio.data.sequence.SequenceUtil
Reads fasta sequences from inStream into the list of FastaSequence objects +
readGlobPlot(InputStream) - +Static method in class compbio.data.sequence.SequenceUtil +
> Foobar_dundeefriends + + # COILS 34-41, 50-58, 83-91, 118-127, 160-169, 191-220, 243-252, 287-343 + + # REM465 355-368 + + # HOTLOOPS 190-204 + + # RESIDUE COILS REM465 HOTLOOPS + + M 0.86010 0.88512 0.37094 + + T 0.79983 0.85864 0.44331 + + >Next Sequence name +
readIUPred(File) - +Static method in class compbio.data.sequence.SequenceUtil +
Read IUPred output
readJRonn(File) - Static method in class compbio.data.sequence.SequenceUtil
 
readJRonn(InputStream) - Static method in class compbio.data.sequence.SequenceUtil
Reader for JRonn horizontal file format +
RegistryWS - Interface in compbio.data.msa
JABAWS services registry
remove() - +Method in class compbio.data.sequence.FastaReader +
Not implemented
removeArgument(String) - Method in class compbio.metadata.RunnerConfig
Removes the argument Argument if found. @@ -119,6 +165,9 @@ Constructor for exception compbio.metadata.ResultNotAvailableException(String, Throwable) - Constructor for exception compbio.metadata.ResultNotAvailableException
  +
ResultNotAvailableExceptionBean - Class in compbio.data.msa.jaxws
This class was generated by the JAX-WS RI.
ResultNotAvailableExceptionBean() - +Constructor for class compbio.data.msa.jaxws.ResultNotAvailableExceptionBean +
 
RunnerConfig<T> - Class in compbio.metadata
The list of Parameters and Options supported by executable.
RunnerConfig() - Constructor for class compbio.metadata.RunnerConfig