X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdm_javadoc%2Findex-files%2Findex-2.html;h=e5740c5f038d261c52c25b3ab7b3b961bfcd966b;hb=6695d8f2418a044b900e9a23dfc3bd04e0f7c222;hp=bd0ef236c8314b259b240244337e96039ff5ec6b;hpb=02ace2e4cf6d29a70be3dd799f84e3f14333cdbb;p=jabaws.git
diff --git a/website/dm_javadoc/index-files/index-2.html b/website/dm_javadoc/index-files/index-2.html
index bd0ef23..e5740c5 100644
--- a/website/dm_javadoc/index-files/index-2.html
+++ b/website/dm_javadoc/index-files/index-2.html
@@ -2,12 +2,12 @@
-
+
C-Index
-
+
@@ -82,8 +82,8 @@ function windowTitle()
C
-- cancelJob(String) -
-Method in interface compbio.data.msa.MsaWS
+
- cancelJob(String) -
+Method in interface compbio.data.msa.JManagement
- Stop running the job
jobId but leave its output untouched
- ChunkHolder - Class in compbio.metadata
- Represents a chunk of a string data together with the position in a file for
the next read operation.
- ChunkHolder(String, long) -
@@ -98,11 +98,10 @@ Static method in class compbio.data.sequence.ClustalAlignmentUtil - Class in compbio.data.sequence
- Tools to read and write clustal formated files
- ClustalAlignmentUtil() -
Constructor for class compbio.data.sequence.ClustalAlignmentUtil
-
-
- compbio.data.msa - package compbio.data.msa
- Web Service interfaces for JAva Bioinformatics Analysis Web Services.
- compbio.ws.client - package compbio.ws.client
- A command line client and web services testing client for
- JAva Bioinformatics Analysis Web Services.
- connect(String, Services) -
+
- compbio.data.msa - package compbio.data.msa
- Web Service interfaces for JAva Bioinformatics Analysis Web Services.
- connect(String, Services) -
Static method in class compbio.ws.client.Jws2Client
- Connects to a web service by the host and the service name
-
- copyAndValidateRConfig(RunnerConfig<?>) -
+
- ConservationMethod - Enum in compbio.data.sequence
- Enumeration listing of all the supported methods.
- copyAndValidateRConfig(RunnerConfig<?>) -
Method in class compbio.metadata.RunnerConfig
-
- countMatchesInSequence(String, String) -
@@ -111,6 +110,10 @@ Static method in class compbio.data.sequence.customAlign(List<FastaSequence>, List<Option<T>>) -
Method in interface compbio.data.msa.MsaWS
- Align a list of sequences with options.
+
- customAnalize(List<FastaSequence>, List<Option<T>>) -
+Method in interface compbio.data.msa.Annotation
+
- Analyse the sequences according to custom settings defined in options
+ list.