X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fdownload.html;h=88923dff7fdb68f8b82bbd3cb764429722bdab11;hb=c219257fd9512af182cd65ab5bda8d3dc7ef12c6;hp=1abf8354290a2574cb160e8bdacbcbd4b6bc7006;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git diff --git a/website/download.html b/website/download.html index 1abf835..88923df 100644 --- a/website/download.html +++ b/website/download.html @@ -1,11 +1,11 @@ - + - - + Java Bioinformatics Analysis Web Services (JABAWS) download page @@ -17,69 +17,74 @@ page
+ +
-
Home Manual +
-

For Users

-

JABAWS Server Virtual Machine

-

JABAWS virtual machine is a way of running fully functional JABA Web Services on your own computer. To use virtual machine (VM) you have to install a software for running it. We would recommend VMWare Player v 3.1 for Windows and Linux users. There is also an Oracle VirtualBox v. 3.2 for Mac users. Both are free and installation is simple. Jalview can use your local JABAWS VM.

+

JABAWS Server Virtual Machine

+

JABAWS virtual machine is a way of running fully functional JABA Web Services on your own computer. To use virtual machine (VM) you have to install a software for running it. We would recommend VMWare Player for Windows and Linux users or VMware Fusion for Mac users. Jalview can use your local JABAWS VM.

    -
  • JABAWS Virtual Appliance: download (520M)
    • +
  • JABAWS Virtual Appliance: download (520M)

Please check out our manual for the detailed instructions.

-

For System Administrators

-

JABAWS Server Web Application

-

The JABAWS Server Web Application aRchive (WAR) version is for you if you want to deploy JABAWS for many users e.g. your laboratory or if you are an expert user and want to have more control on JABAWS. Typically, you will have a cluster or at least a powerful server machine which all users are willing to use. If you only have a single server then, you may use JABAWS Server Virtual Appliance instead. The server is provided as a self-contained Web Application -aRchive (WAR) containing all necessary binaries. WAR file can be deployed on any - web application server -supporting Servlet 2.4 specification i.e. Tomcat 6.0.

+ +

JABAWS Server Web Application

+

The JABAWS Server Web Application aRchive (WAR) version is for you if you want to deploy JABAWS for many users e.g. your laboratory or if you are an expert user and want to have more control on JABAWS. You can also use this version for Mac and Linux computers if you do not want to use virtualization. Finally, you can use this version with a cluster.
+ The server is provided as a self-contained Web Application + aRchive (WAR) containing all necessary binaries. WAR file can be deployed on any + web application server + + supporting at the Java servlet specification v. 2.4 or above, i.e. Tomcat 7.0.

  • A Complete Server for all platforms: download -(45M)
    • +(51M)
-

Please bear in mind that if you deploy JABAWS WAR on Windows only Muscle and Clustal web services will work! If you want to run other web services on Windows use JABAWS Server VM package instead. +

Please bear in mind that if you deploy JABAWS WAR on Windows, not all web services will be functional. Use the JABAWS Server VM package instead.

-

For Bioinformaticians/Developers

-

JABAWS Command Line Client

-

The command line client is an executable Java program for scripting against JABA web services. If you intend to use JABAWS in your own program and need a template - download a command line client source package. You can even generate a Graphical User Interface (GUI) for JABA web services for your own program! You can consult Jalview source code for a help with that.

+ +

JABAWS Command Line Client

+

The command line client is an executable Java program for scripting against JABA web services. Its also useful as an example of how to access JABAWS services if you intend to use JABAWS in your own program, with functions demonstrating how to discover command line parameters and presets supported by a service, and how to run, monitor and retrieve the results of a job. Note: The client is used in the Jalview 2.6.1 source code to autogenerate a graphical user interface for JABA services.

  • Command line client
    • binaries: download (80 K)
      • +"http://www.compbio.dundee.ac.uk/jabaws/archive/min-jaba-client-2.0.jar">download (80 K)
    • source: download (70 K)
      • +"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba-client-source-2.0.jar">download (70 K)
-

Help with a command line client is available from the manual pages.

- +

The command line client will display help documentation if it is run with no arguments, the same information is also given in the command line client's manual page.

+

Version

+

Current JABAWS version is 1.1 release date 7 April 2011. Please consult the change log file for the breakdown of the changes.

- - + + -
-