X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Fengine%2Fclient%2FExecutable.html;h=20de800e2e1d079fd169c5a0e3069c0906c9b0fb;hb=2da44d18582e4d851e137573346a4916435c220b;hp=9f7254f770934c915a97c8a13954445a74b3cda1;hpb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;p=jabaws.git diff --git a/website/full_javadoc/compbio/engine/client/Executable.html b/website/full_javadoc/compbio/engine/client/Executable.html index 9f7254f..20de800 100644 --- a/website/full_javadoc/compbio/engine/client/Executable.html +++ b/website/full_javadoc/compbio/engine/client/Executable.html @@ -2,12 +2,12 @@ - + Executable - + @@ -94,10 +94,10 @@ Interface Executable<T>
Type Parameters:
T -
-
All Known Subinterfaces:
ClusterNativeSpecExecutable<T>, ConfiguredExecutable<T>, PipedExecutable<T>
+
All Known Subinterfaces:
ConfiguredExecutable<T>, PipedExecutable<T>
-
All Known Implementing Classes:
_SkeletalCommandBuilder, BlastAll, ClustalW, ConfExecutable, Disembl, Mafft, Mcl, Muscle, NetNglyc, OB, Probcons, PsiBlast, PSIBlast, Ronn, RPSBlast, SkeletalExecutable, Tcoffee
+
All Known Implementing Classes:
_SkeletalCommandBuilder, AACon, BlastAll, ClustalO, ClustalW, ConfExecutable, Disembl, GlobPlot, IUPred, Jronn, Mafft, Mcl, Muscle, NetNglyc, OB, Probcons, PSIBlast, Ronn, RPSBlast, SkeletalExecutable, Tcoffee
@@ -145,22 +145,30 @@ Interface to a native executable.  Executable<T> -addParameters(java.util.List<java.lang.String> parameters) +addParameters(List<String> parameters)
          Adds parameter to the list of parameters for a native executable - java.util.List<java.lang.String> -getCreatedFiles() + String +getClusterJobSettings()
            - java.lang.String + List<String> +getCreatedFiles() + +
+          Deprecated.  + + + + String getError()
@@ -168,7 +176,7 @@ Interface to a native executable. - java.lang.String + String getInput()
@@ -177,7 +185,7 @@ Interface to a native executable.  Limit<T> -getLimit(java.lang.String presetName) +getLimit(String presetName)
            @@ -192,7 +200,7 @@ Interface to a native executable. - java.lang.String + String getOutput()
@@ -216,7 +224,7 @@ Interface to a native executable. -getResults(java.lang.String directory) +getResults(String directory)
            @@ -246,7 +254,7 @@ Interface to a native executable.

addParameters

-Executable<T> addParameters(java.util.List<java.lang.String> parameters)
+Executable<T> addParameters(List<String> parameters)
Adds parameter to the list of parameters for a native executable

@@ -260,8 +268,11 @@ addParameters

getCreatedFiles

-java.util.List<java.lang.String> getCreatedFiles()
+@Deprecated +List<String> getCreatedFiles()
+
Deprecated.  +

@@ -271,7 +282,7 @@ java.util.List<java.lang.String> getCreatedFiles()

getInput

-java.lang.String getInput()
+String getInput()
@@ -282,7 +293,7 @@ java.lang.String getInput()

getOutput

-java.lang.String getOutput()
+String getOutput()
@@ -293,7 +304,7 @@ java.lang.String getOutput()

getError

-java.lang.String getError()
+String getError()
@@ -315,7 +326,7 @@ getParameters

getResults

-<V> V getResults(java.lang.String directory)
+<V> V getResults(String directory)
              throws ResultNotAvailableException
@@ -340,7 +351,7 @@ loadRunConfiguration

getLimit

-Limit<T> getLimit(java.lang.String presetName)
+Limit<T> getLimit(String presetName)
@@ -357,6 +368,17 @@ getLimits
+
+ +

+getClusterJobSettings

+
+String getClusterJobSettings()
+
+
+
+
+