X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_NativeSpecHelper.html;h=04c478adcafa83e23cd55df7ec4614568f816d8a;hb=f1bdd8da517901fe1d7957d388ea579ad1fbaa3b;hp=05a5ca7641ba0f71a9dd28a2959fd2d657e36ef0;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/website/full_javadoc/compbio/runner/_NativeSpecHelper.html b/website/full_javadoc/compbio/runner/_NativeSpecHelper.html
index 05a5ca7..04c478a 100644
--- a/website/full_javadoc/compbio/runner/_NativeSpecHelper.html
+++ b/website/full_javadoc/compbio/runner/_NativeSpecHelper.html
@@ -2,12 +2,12 @@
 <!--NewPage-->
 <HTML>
 <HEAD>
-<!-- Generated by javadoc (build 1.6.0_14) on Wed Feb 17 16:46:49 GMT 2010 -->
+<!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:30:40 GMT 2011 -->
 <TITLE>
 _NativeSpecHelper
 </TITLE>
 
-<META NAME="date" CONTENT="2010-02-17">
+<META NAME="date" CONTENT="2011-12-07">
 
 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">
 
@@ -92,12 +92,15 @@ compbio.runner</FONT>
 <BR>
 Class _NativeSpecHelper</H2>
 <PRE>
-java.lang.Object
+<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">java.lang.Object</A>
   <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>compbio.runner._NativeSpecHelper</B>
 </PRE>
 <HR>
+<B>Deprecated.</B>
+<P>
 <DL>
-<DT><PRE>public class <B>_NativeSpecHelper</B><DT>extends java.lang.Object</DL>
+<DT><PRE><FONT SIZE="-1"><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Deprecated.html?is-external=true" title="class or interface in java.lang">@Deprecated</A>
+</FONT>public class <B>_NativeSpecHelper</B><DT>extends <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></DL>
 </PRE>
 
 <P>
@@ -117,14 +120,14 @@ java.lang.Object
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int)">_NativeSpecHelper</A></B>(int&nbsp;requiredMemory)</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#_NativeSpecHelper(int, int)">_NativeSpecHelper</A></B>(int&nbsp;requiredMemory,
                   int&nbsp;maxCalculationTime)</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 </TABLE>
 &nbsp;
@@ -142,31 +145,31 @@ java.lang.Object
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#getApproprieteQueue()">getApproprieteQueue</A></B>()</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
-<CODE>&nbsp;java.lang.String</CODE></FONT></TD>
+<CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#getNativeSpec()">getNativeSpec</A></B>()</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
-<CODE>&nbsp;java.lang.String</CODE></FONT></TD>
+<CODE>&nbsp;<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A></CODE></FONT></TD>
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#getQueue()">getQueue</A></B>()</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
 <CODE>&nbsp;void</CODE></FONT></TD>
-<TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#setQueue(java.lang.String)">setQueue</A></B>(java.lang.String&nbsp;queue)</CODE>
+<TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#setQueue(java.lang.String)">setQueue</A></B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;queue)</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
@@ -174,16 +177,16 @@ java.lang.Object
 <TD><CODE><B><A HREF="../../compbio/runner/_NativeSpecHelper.html#setRequiredMemory(int)">setRequiredMemory</A></B>(int&nbsp;memory)</CODE>
 
 <BR>
-&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
+&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<B>Deprecated.</B>&nbsp;&nbsp;</TD>
 </TR>
 </TABLE>
 &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
-<TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
+<TH ALIGN="left"><B>Methods inherited from class java.lang.<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</A></B></TH>
 </TR>
 <TR BGCOLOR="white" CLASS="TableRowColor">
-<TD><CODE>equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>
+<TD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</A>, <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</A></CODE></TD>
 </TR>
 </TABLE>
 &nbsp;
@@ -204,7 +207,7 @@ _NativeSpecHelper</H3>
 <PRE>
 public <B>_NativeSpecHelper</B>(int&nbsp;requiredMemory)</PRE>
 <DL>
-</DL>
+<DD><B>Deprecated.</B>&nbsp;</DL>
 <HR>
 
 <A NAME="_NativeSpecHelper(int, int)"><!-- --></A><H3>
@@ -213,7 +216,7 @@ _NativeSpecHelper</H3>
 public <B>_NativeSpecHelper</B>(int&nbsp;requiredMemory,
                          int&nbsp;maxCalculationTime)</PRE>
 <DL>
-</DL>
+<DD><B>Deprecated.</B>&nbsp;</DL>
 
 <!-- ============ METHOD DETAIL ========== -->
 
@@ -230,7 +233,7 @@ setRequiredMemory</H3>
 <PRE>
 public void <B>setRequiredMemory</B>(int&nbsp;memory)</PRE>
 <DL>
-<DD><DL>
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>
 </DL>
 </DD>
 </DL>
@@ -239,9 +242,9 @@ public void <B>setRequiredMemory</B>(int&nbsp;memory)</PRE>
 <A NAME="setQueue(java.lang.String)"><!-- --></A><H3>
 setQueue</H3>
 <PRE>
-public void <B>setQueue</B>(java.lang.String&nbsp;queue)</PRE>
+public void <B>setQueue</B>(<A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A>&nbsp;queue)</PRE>
 <DL>
-<DD><DL>
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>
 </DL>
 </DD>
 </DL>
@@ -250,9 +253,9 @@ public void <B>setQueue</B>(java.lang.String&nbsp;queue)</PRE>
 <A NAME="getQueue()"><!-- --></A><H3>
 getQueue</H3>
 <PRE>
-public java.lang.String <B>getQueue</B>()</PRE>
+public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getQueue</B>()</PRE>
 <DL>
-<DD><DL>
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>
 </DL>
 </DD>
 </DL>
@@ -261,13 +264,13 @@ public java.lang.String <B>getQueue</B>()</PRE>
 <A NAME="getNativeSpec()"><!-- --></A><H3>
 getNativeSpec</H3>
 <PRE>
-public java.lang.String <B>getNativeSpec</B>()
-                               throws java.net.UnknownServiceException</PRE>
+public <A HREF="http://java.sun.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</A> <B>getNativeSpec</B>()
+                     throws <A HREF="http://java.sun.com/javase/6/docs/api/java/net/UnknownServiceException.html?is-external=true" title="class or interface in java.net">UnknownServiceException</A></PRE>
 <DL>
-<DD><DL>
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>
 
 <DT><B>Throws:</B>
-<DD><CODE>java.net.UnknownServiceException</CODE></DL>
+<DD><CODE><A HREF="http://java.sun.com/javase/6/docs/api/java/net/UnknownServiceException.html?is-external=true" title="class or interface in java.net">UnknownServiceException</A></CODE></DL>
 </DD>
 </DL>
 <HR>
@@ -277,7 +280,7 @@ getApproprieteQueue</H3>
 <PRE>
 public <A HREF="../../compbio/engine/cluster/dundee/_Queue.html" title="enum in compbio.engine.cluster.dundee">_Queue</A> <B>getApproprieteQueue</B>()</PRE>
 <DL>
-<DD><DL>
+<DD><B>Deprecated.</B>&nbsp;<DD><DL>
 </DL>
 </DD>
 </DL>
