X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FBlastAll.html;fp=website%2Ffull_javadoc%2Fcompbio%2Frunner%2F_impl%2FBlastAll.html;h=62d0af103e62eb647916ef31e39f89595b36a38c;hb=c30e285fec44c123abcd11eab235803516064897;hp=0000000000000000000000000000000000000000;hpb=9d593e4828b2ce526a4e1fd1b11c8f78b112b5f5;p=jabaws.git
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+BlastAll
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+compbio.runner._impl
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+Class BlastAll
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+java.lang.Object
+ compbio.runner._SkeletalCommandBuilder
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+- All Implemented Interfaces:
- Executable<_SkeletalCommandBuilder>
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+public class BlastAll
- extends _SkeletalCommandBuilder
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+Nested Class Summary |
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+Constructor Summary |
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+BlastAll(String workDirectory)
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+Methods inherited from class compbio.runner._SkeletalCommandBuilder |
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+addParameter, addParameters, addParameters, getClusterJobSettings, getEmail, getError, getLimit, getLimits, getName, getOutput, getParameters, getResults, loadRunConfiguration, setEmail, setName |
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+Constructor Detail |
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+BlastAll
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+public BlastAll(String workDirectory)
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+removeOutput
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+public boolean removeOutput(String outfile)
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+getCommand
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+public String getCommand(Executable.ExecProvider provider)
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+getCommandName
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+public String getCommandName()
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+getCreatedFiles
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+public List<String> getCreatedFiles()
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+getInput
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+public String getInput()
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