X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ffull_javadoc%2Fcompbio%2Frunner%2Fmsa%2Fclass-use%2FTcoffee.html;h=d54f3b8b436ebf9cc3888865d6a53f5aa9de39de;hb=HEAD;hp=243fcd98abd2fc547a47ab2f4baf17571cd91fc5;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git
diff --git a/website/full_javadoc/compbio/runner/msa/class-use/Tcoffee.html b/website/full_javadoc/compbio/runner/msa/class-use/Tcoffee.html
index 243fcd9..d54f3b8 100644
--- a/website/full_javadoc/compbio/runner/msa/class-use/Tcoffee.html
+++ b/website/full_javadoc/compbio/runner/msa/class-use/Tcoffee.html
@@ -2,12 +2,12 @@
-
+
Uses of Class compbio.runner.msa.Tcoffee
-
+
@@ -117,7 +117,7 @@ Uses of
Tcoffee |
-Tcoffee.setInput(java.lang.String inFile)
+ | Tcoffee.setInput(String inFile)
|
@@ -132,24 +132,16 @@ Uses of
- Limit<Tcoffee> |
-Tcoffee.getLimit(java.lang.String presetName)
-
-
- |
-
-
-
- LimitsManager<Tcoffee> |
-Tcoffee.getLimits()
+ CommandBuilder<Tcoffee> |
+Tcoffee.getParameters(Executable.ExecProvider provider)
|
- CommandBuilder<Tcoffee> |
-Tcoffee.getParameters(Executable.ExecProvider provider)
+ Class<Tcoffee> |
+Tcoffee.getType()
|
@@ -174,7 +166,7 @@ Uses of
Limit<Tcoffee> |
-TcoffeeWS.getLimit(java.lang.String presetName)
+ | TcoffeeWS.getLimit(String presetName)
|
@@ -213,17 +205,17 @@ Uses of
- java.lang.String |
-TcoffeeWS.customAlign(java.util.List<FastaSequence> sequences,
- java.util.List<Option<Tcoffee>> options)
+ String |
+TcoffeeWS.customAlign(List<FastaSequence> sequences,
+ List<Option<Tcoffee>> options)
|
- java.lang.String |
-TcoffeeWS.presetAlign(java.util.List<FastaSequence> sequences,
+ String |
+TcoffeeWS.presetAlign(List<FastaSequence> sequences,
Preset<Tcoffee> preset)
|