X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Findex.html;fp=website%2Findex.html;h=a72286d3e6ae85e9d43bb232ff3f42691fd43b51;hb=370eba4341a85f3eed877e9bb4648c73e345faa4;hp=3714aeb7b109ed575284c4a013aead16a6e62ded;hpb=a6169a9b7a8e05ce696b157ea0e71b6a74c3b90f;p=jabaws.git diff --git a/website/index.html b/website/index.html index 3714aeb..a72286d 100644 --- a/website/index.html +++ b/website/index.html @@ -4,7 +4,8 @@ -Java Bioinformatics Analyses Web Services (JABAWS) main page +Java Bioinformatics Analyses Web Services (JABAWS) main +page - +
JABAWS-3.0aJABAWS-2.1 Disorder
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- Home + Home Getting Started Manual Download @@ -43,13 +44,13 @@
-

JABAWS 3 (alpha version)

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JABAWS is free software which provides web services for multiple sequence alignment, prediction of protein disorder, and amino acid conservation conveniently packaged to run on your local computer, server or cluster. JABAWS v3.0a introduces protein disorder prediction services based on DisEMBL, IUPred, Ronn, GlobPlot and protein sequence alignment conservation measures calculated by AACon. A new multiple sequence alignment service for Clustal Omega is also provided, in addition to standard JABAWS:MSA services for Clustal W, JABAWS 2.1 +

JABAWS is free software which provides web services for multiple sequence alignment, prediction of protein disorder, and amino acid conservation conveniently packaged to run on your local computer, server or cluster. JABAWS v2.1 introduces protein disorder prediction services based on DisEMBL, IUPred, Ronn, GlobPlot and protein sequence alignment conservation measures calculated by AACon. A new multiple sequence alignment service for Clustal Omega is also provided, in addition to standard JABAWS:MSA services for Clustal W, MAFFT, MUSCLE, TCOFFEE and PROBCONS. JABA Web Services can be accessed from the Jalview desktop application and provide multiple alignment and sequence analysis calculations limited only by your own local computing resources.

-Please note that JABAWS 3a is supported by Jalview 2.6.1 onwards, but the disorder prediction, Clustal Omega and AACon services will only be accessible in Jalview 2.8 (due for release in January 2012). In the meantime you can access all JABAWS3 services through the JABAWS command-line client.

+Please note that JABAWS 2.1 is supported by Jalview 2.6.1 onwards, but the disorder prediction, Clustal Omega and AACon services will only be accessible in Jalview 2.8 (due for release in January 2012). In the meantime you can access all JABAWS2.1 services through the JABAWS command-line client.

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For System Administrators

The Server: JABAWS Web Application aRchive (55M)

+"http://www.compbio.dundee.ac.uk/download/get?id=jabaws.war">JABAWS Web Application aRchive (55M)

JABAWS requires a Servlet 2.4 compatible servlet container like Apache-Tomcat to run. Please check the quick start guide for installation instructions.

For Bioinformaticians/Developers

-The Server: JABAWS Web Application aRchive (55M) +The Server: JABAWS Web Application aRchive (55M)
The Client: Command Line Client binary | quick start guide for furt

Public JABAWS Server

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You can access our public JABA Web Services with our command line client, Jalview, or with your own program. Jalview version 2.8 or later is fully compatible with JABAWS 3a. The latest versions of Jalview are configured to use public JABAWS server by default.

+

You can access our public JABA Web Services with our command line client, Jalview, or with your own program. Jalview version 2.8 or later is fully compatible with JABAWS 2.1. The latest versions of Jalview are configured to use public JABAWS server by default.

  • The JABAWS public web services address is http://www.compbio.dundee.ac.uk/jabaws
  • A detailed web services description is available from here: