JABAWS
-JABAWS:MSA provides five web services for multiple sequence alignment: Clustal W, JABAWS 2
+ JABAWS2.0:Disorder is free software which provides web services for prediction of protein disorder, multiple sequence alignment and amino acid conservation conveniently packaged to run on your local computer, server or cluster. Disorder prediction services are based on DisEMBL, IUPred, Ronn, GlobPlot, conservation is calculated by AACon, multiple sequence alignment services are the Clustal Omega, Clustal W, MAFFT, MUSCLE, TCOFFEE and PROBCONS conveniently packaged to run on your local computer, server or cluster.
+"http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"> TCOFFEE
For System Administrators
The Server: JABAWS Web Application aRchive (45M)
+"http://www.compbio.dundee.ac.uk/jabaws/archive/jaba.war">JABAWS Web Application aRchive (51M)JABAWS requires a Servlet 2.4 compatible servlet container like Apache-Tomcat to run. Please check the quick start guide for installation instructions.
For Bioinformaticians/Developers
The Client: - Command Line Client binary | source + Command Line Client binary | source @@ -100,13 +102,12 @@ title="http://www.compbio.dundee.ac.uk/jabaws/ClustalWS?" rel=
Publication
-Peter V. Troshin, James B. Procter and Geoffrey J. Barton "JABAWS:MSA Distributed Web Services for Bioinformatics: Multiple Sequence Alignment" -- paper submitted.
+Peter V. Troshin, James B. Procter and Geoffrey J. Barton - "Java Bioinformatics Analysis Web Services for Multiple Sequence Alignment - JABAWS:MSA" Bioinformatics 2011; doi: 10.1093/bioinformatics/btr304.
- This site is best viewed in Firefox 3.6, Google Chrome 10 or Internet Explorer 8
+ This site is best viewed in Firefox 3.6, Google Chrome 10, Internet Explorer 8 or above