X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Fman_client.html;h=5738114c955111fc99119dacfb1c89bd3acf2214;hb=090019db316f94c9f9b964244476fa78296f92f8;hp=dc651ab2ee427e47286a35d210f6cb3b328ddb9f;hpb=b413eee53fa3cc22a6bd4e03c9ac64bf26b7c834;p=jabaws.git

diff --git a/website/man_client.html b/website/man_client.html
index dc651ab..5738114 100644
--- a/website/man_client.html
+++ b/website/man_client.html
@@ -1,8 +1,9 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE html PUBLIC "XHTML 1.0 Strict"
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-<meta name="Last-modified" content="Mon, 11 Dec 2010 01:03:33 GMT"/>
+<meta name="Last-modified" content="Mon, 4 Apr 2011 12:00:00 GMT"/>
 <title>Java Bioinformatics Analyses Web Services (JABAWS) Command Line Client manual</title>
 <link href="ws.css" rel="stylesheet" type="text/css" media=
 "screen, projection, handheld, tv" />
@@ -14,29 +15,33 @@
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-<td class="bg"><h1><span class="headeru">JA</span>va <span class=
-"headeru">B</span>ioinformatics <span class="headeru">A</span>nalysis <span class="headeru">W</span>eb <span
-class="headeru">S</span>ervices</h1></td>
+<tr><td style="width:158px;"><a href="http://www.dundee.ac.uk"><img src="images/uod_lt_long.gif"  alt="University of Dundee" width="158" height="90" class="logo"  title="University of Dundee" longdesc="http://www.dundee.ac.uk"/></a></td>
+<td class="bg"><img src="images/jabaws2.png" alt="JABAWS-2.0:Disorder" width="353" height="67" title="JABAWS-2.0:Disorder"/></td>
+<td class="bg"><img src="images/banner_right.png" alt="Disorder" width="200" height="80"/></td>
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- <a class="selected" href="manual.html">Manual</a> 
+  <a href="quick_start.html">Getting Started</a> 
+  <a class="selected" href="man_about.html">Manual</a> 
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-		<a href="manual.html">Quick Start Guide</a>
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+		<a href="man_stats.html" title="JABAWS Usage Statistics">Usage Statistics</a>
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+		<a href="man_server_dev.html" >JABAWS Development</a>
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-<a href="http://www.compbio.dundee.ac.uk">Barton Group</a> 
+<a href="contacts.html">Contact Us</a>
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@@ -45,7 +50,7 @@ class="headeru">S</span>ervices</h1></td>
 
 <h2><a name="usingcclient" id="usingcclient"></a>JABAWS Command Line Client Usage </h2>
 <p>The command line client comes as a part of <a href="download.html"> client package</a> which you are welcome to download. The command line client can be used to align sequences using any of JABAWS supported web services. The client is OS independent and supports most of the functions which can be accessed programmatically via <a href="dm_javadoc/index.html">JABAWS API</a>. Using this client you could align sequences using presets or custom parameters, please see examples of this below. Here is the list of options supported by the command line client. </p>
-<span class="code"><strong>Usage:</strong> java -jar &lt;path_to_jar_file&gt; -h=host_and_context -s=serviceName ACTION [OPTIONS]
+<span class="code"><strong>Usage:</strong> java -jar &lt;path_to_jar_file&gt; -h=host_and_context -s=serviceName ACTION [OPTIONS]<br />
 -h=&lt;host_and_context&gt; - a full URL to the JABAWS web server including context path e.g. http://10.31.10.159:8080/ws<br />
 -s=&lt;ServiceName&gt; - one of [MafftWS, MuscleWS, ClustalWS, TcoffeeWS, ProbconsWS]
 </p>
@@ -85,7 +90,7 @@ Please note that -r and -f options cannot be used together. Alignment is done wi
 </div>
 
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-<div id="copyright">Last update: 7 January 2011<br />
+<div id="copyright">Last update: 1 April 2011<br />
  Peter Troshin, Jim Procter and Geoff Barton, The Barton Group, University of
 Dundee, UK</div>
 </div>
