X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ftests%2FAnt%20suite%2FAnt%20test.html;h=4ad541983814ac581918d23a6d8c208c83428f74;hb=4a4d6475dd4e6d29ff7c24ef1567885cdb45f193;hp=98af8e88dd42b4f6fd4dd4df418c263c8af5d8c0;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git diff --git a/website/tests/Ant suite/Ant test.html b/website/tests/Ant suite/Ant test.html index 98af8e8..4ad5419 100644 --- a/website/tests/Ant suite/Ant test.html +++ b/website/tests/Ant suite/Ant test.html @@ -55,15 +55,15 @@ function toggleAllBoxes() {

Ant test

- + - + - + - +
Tests passed/Failed/Skipped:165/0/0Tests passed/Failed/Skipped:216/0/0
Started on:Wed Feb 17 15:34:08 GMT 2010Started on:Thu Jun 23 10:34:54 BST 2011
Total time:524 seconds (524407 ms)
Total time:453 seconds (453928 ms)
Included groups:
Excluded groups:performance Excluded groups:webservices performance

(Hover the method name to see the test class name)

@@ -75,102 +75,132 @@ function toggleAllBoxes() { Exception +loadJronnFile
Test class:Ant test +compbio.data.sequence.SequenceUtilTester@235f4a7f0 + + + marshallPreset
Test class:Ant test -compbio.metadata.PresetTester@50009f0d0 +compbio.metadata.PresetTester@7a4fe91e0 + + + +readStatistics
Test class:Ant test +compbio.runner.conservation.AAConTester@1959e6e81 + + + +readStatistics
Test class:Ant test +compbio.runner.disorder.DisemblTester@5d4696580 + + + +readStatistics
Test class:Ant test +compbio.runner.disorder.GlobPlotTester@45389b3f0 + + + +readStatistics
Test class:Ant test +compbio.runner.disorder.JronnTester@3d3b5a3a18 readStatistics
Test class:Ant test -compbio.runner.msa.ClustalWTester@4125d61e1 +compbio.runner.msa.ClustalWTester@3a0b53e0 readStatistics
Test class:Ant test -compbio.runner.msa.MafftTester@259a84160 +compbio.runner.msa.MafftTester@5f0f06250 readStatistics
Test class:Ant test -compbio.runner.msa.MuscleTester@37b994de0 +compbio.runner.msa.MuscleTester@63f8247d0 readStatistics
Test class:Ant test -compbio.runner.msa.ProbconsTester@5a57e7870 +compbio.runner.msa.ProbconsTester@328301220 readStatistics
Test class:Ant test -compbio.runner.msa.TcoffeeTester@7df1bd980 +compbio.runner.msa.TcoffeeTester@54a6af6e0 readStatisticsClusterExecution
Test class:Ant test -compbio.runner.msa.ClustalWTester@4125d61e8 +compbio.runner.msa.ClustalWTester@3a0b53e1 + + + +test
Test class:Ant test +compbio.data.sequence.FastaReaderTester@2dc04350 test
Test class:Ant test -compbio.engine.PulledFileCacheTester@1164b9b65 +compbio.engine.PulledFileCacheTester@472462b35 testArguments
Test class:Ant test -compbio.runner.msa.ClustalWParametersTester@132803ba3 +compbio.runner.msa.ClustalWParametersTester@74e2ad161 testArguments
Test class:Ant test -compbio.runner.msa.MafftParametersTester@4cc722436 +compbio.runner.msa.MafftParametersTester@35a8d4603 testArguments
Test class:Ant test -compbio.runner.msa.MuscleParametersTester@4355d3a37 +compbio.runner.msa.MuscleParametersTester@535c97e44 testArguments
Test class:Ant test -compbio.runner.msa.ProbconsParametersTester@78dc97662 +compbio.runner.msa.ProbconsParametersTester@3823bdd11 testArguments
Test class:Ant test -compbio.runner.msa.TcoffeeParametersTester@41217e678 +compbio.runner.msa.TcoffeeParametersTester@36bf79164 testAsyncCancelOperation
Test class:Ant test -compbio.engine.local.AsyncLocalRunnerTester@7461f5330 +compbio.engine.local.AsyncLocalRunnerTester@31df5f210 testAsyncRetrievOperation
Test class:Ant test -compbio.engine.local.AsyncLocalRunnerTester@7461f5330 +compbio.engine.local.AsyncLocalRunnerTester@31df5f210 testCache
Test class:Ant test -compbio.engine.FilePullerTester@5fa80aea6 +compbio.engine.FilePullerTester@1e6704796 testCancel
Test class:Ant test -compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@24e33e181 -

compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found!
-	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:79)
-	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:37)
-	at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:206)
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@57c8b24d1
+
compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:73)
+	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34)
+	at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207)
 	at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109)
-Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found!
-	at compbio.runner.Util.readClustalFile(Util.java:126)
-	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:76)
+Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+	at compbio.runner.Util.readClustalFile(Util.java:93)
+	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70)
 	... 25 more
-... Removed 22 stack frames
Click to show all stack frames
-
compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found!
-	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:79)
-	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:37)
-	at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:206)
+... Removed 22 stack frames
Click to show all stack frames
+
compbio.metadata.ResultNotAvailableException: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:73)
+	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34)
+	at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207)
 	at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109)
 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
@@ -194,33 +224,33 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
 	at org.testng.TestNG.run(TestNG.java:784)
 	at org.testng.TestNG.privateMain(TestNG.java:949)
 	at org.testng.TestNG.main(TestNG.java:922)
-Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found!
-	at compbio.runner.Util.readClustalFile(Util.java:126)
-	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:76)
+Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+	at compbio.runner.Util.readClustalFile(Util.java:93)
+	at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70)
 	... 25 more
 

 
 
 testCancel
Test class:Ant test
-compbio.engine.cluster.drmaa.DrmaaClusterEngineTester@4301ac931
+compbio.engine.cluster.drmaa.DrmaaClusterEngineTester@39320a411
 
 
 
 testCancelCompletedTaskLocally
Test class:Ant test
-compbio.engine.local.AsyncLocalRunnerTester@7461f5333
+compbio.engine.local.AsyncLocalRunnerTester@31df5f213
 
 
 
 testCancelCompletedTaskLocally
Test class:Ant test
-compbio.engine.local.LocalRunnerTester@4b2922f60
+compbio.engine.local.LocalRunnerTester@3fde891b0
 
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
 	at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99)
 	at compbio.engine.local.LocalRunnerTester.testCancelCompletedTaskLocally(LocalRunnerTester.java:139)
-... Removed 22 stack frames
Click to show all stack frames
-
java.util.concurrent.CancellationException
+... Removed 22 stack frames
Click to show all stack frames
+
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
@@ -252,15 +282,15 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
 
 
 testCancelLocally
Test class:Ant test
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
 	at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130)
 	at compbio.engine.local.AsyncLocalRunnerTester.testCancelLocally(AsyncLocalRunnerTester.java:105)
-... Removed 22 stack frames
Click to show all stack frames
-
java.util.concurrent.CancellationException
+... Removed 22 stack frames
Click to show all stack frames
+
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
@@ -292,15 +322,15 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
 
 
 testCancelLocally
Test class:Ant test
-compbio.engine.local.LocalRunnerTester@4b2922f60
+compbio.engine.local.LocalRunnerTester@3fde891b0
 
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
 	at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99)
 	at compbio.engine.local.LocalRunnerTester.testCancelLocally(LocalRunnerTester.java:66)
-... Removed 22 stack frames
Click to show all stack frames
-
java.util.concurrent.CancellationException
+... Removed 22 stack frames
Click to show all stack frames
+
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
@@ -331,163 +361,198 @@ Caused by: java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/
 

 
 
+testCleanProteinSequence
Test class:Ant test
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
+
+
+
 testCleanSequence
Test class:Ant test
-compbio.data.sequence.SequenceUtilTester@ad722000
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
 
 
 
 testClusterEngineConf
Test class:Ant test
-compbio.engine.conf.PropertyHelperManagerTester@307bd0d0
+compbio.engine.conf.PropertyHelperManagerTester@4ee14d810
 
 
 
 testClusterExecute
Test class:Ant test
-compbio.runner.msa.MafftTester@259a841611
+compbio.runner.msa.MafftTester@5f0f06251
 
 
 
 testClusterExecute
Test class:Ant test
-compbio.runner.msa.ProbconsTester@5a57e78719
+compbio.runner.msa.ProbconsTester@328301222
 
 
 
 testClusterExecute
Test class:Ant test
-compbio.runner.msa.TcoffeeTester@7df1bd985
+compbio.runner.msa.TcoffeeTester@54a6af6e5
+
+
+
+testCollectStat
Test class:Ant test
+compbio.stat.collector.ExecutionStatCollectorTester@b478a2d0
 
 
 
 testCommandBuilding
Test class:Ant test
-compbio.engine.client.CommandBuilderTester@6bdc64a50
+compbio.engine.client.CommandBuilderTester@25cbfa420
 
 
 
 testConfiguration
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba0
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testConfiguration
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722430
+compbio.runner.msa.MafftParametersTester@35a8d4600
 
 
 
 testConfiguration
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a30
+compbio.runner.msa.MuscleParametersTester@535c97e40
 
 
 
 testConfiguration
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc97660
+compbio.runner.msa.ProbconsParametersTester@3823bdd10
 
 
 
 testConfiguration
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e670
+compbio.runner.msa.TcoffeeParametersTester@36bf79160
+
+
+
+testConfigurationLoading
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e80
+
+
+
+testConfigurationLoading
Test class:Ant test
+compbio.runner.disorder.DisemblTester@5d4696580
+
+
+
+testConfigurationLoading
Test class:Ant test
+compbio.runner.disorder.GlobPlotTester@45389b3f0
+
+
+
+testConfigurationLoading
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a0
+
+
+
+testConfigurationLoading
Test class:Ant test
+compbio.runner.disorder.JronnTester@3d3b5a3a0
 
 
 
 testConfigurationLoading
Test class:Ant test
-compbio.runner.msa.ClustalWTester@4125d61e0
+compbio.runner.msa.ClustalWTester@3a0b53e0
 
 
 
 testConfigurationLoading
Test class:Ant test
-compbio.runner.msa.MafftTester@259a84160
+compbio.runner.msa.MafftTester@5f0f06250
 
 
 
 testConfigurationLoading
Test class:Ant test
-compbio.runner.msa.MuscleTester@37b994de0
+compbio.runner.msa.MuscleTester@63f8247d0
 
 
 
 testConfigurationLoading
Test class:Ant test
-compbio.runner.msa.ProbconsTester@5a57e7870
+compbio.runner.msa.ProbconsTester@328301220
 
 
 
 testConfigurationLoading
Test class:Ant test
-compbio.runner.msa.TcoffeeTester@7df1bd980
+compbio.runner.msa.TcoffeeTester@54a6af6e0
 
 
 
 testConstrainedParametersMaxValues
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba1
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testConstrainedParametersMaxValues
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722433
+compbio.runner.msa.MafftParametersTester@35a8d4601
 
 
 
 testConstrainedParametersMaxValues
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a31
+compbio.runner.msa.MuscleParametersTester@535c97e41
 
 
 
 testConstrainedParametersMaxValues
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc976638
+compbio.runner.msa.ProbconsParametersTester@3823bdd137
 
 
 
 testConstrainedParametersMaxValues
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e6711
+compbio.runner.msa.TcoffeeParametersTester@36bf79164
 
 
 
 testConstrainedParametersMinValues
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba1
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testConstrainedParametersMinValues
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722431
+compbio.runner.msa.MafftParametersTester@35a8d4600
 
 
 
 testConstrainedParametersMinValues
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a30
+compbio.runner.msa.MuscleParametersTester@535c97e41
 
 
 
 testConstrainedParametersMinValues
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc97660
+compbio.runner.msa.ProbconsParametersTester@3823bdd10
 
 
 
 testConstrainedParametersMinValues
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e675
+compbio.runner.msa.TcoffeeParametersTester@36bf79162
 
 
 
 testConstrainedParametersRandomValues
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba3
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testConstrainedParametersRandomValues
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722437
+compbio.runner.msa.MafftParametersTester@35a8d4603
 
 
 
 testConstrainedParametersRandomValues
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a37
+compbio.runner.msa.MuscleParametersTester@535c97e42
 
 
 
 testConstrainedParametersRandomValues
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc976661
+compbio.runner.msa.ProbconsParametersTester@3823bdd170
 
 
 
 testConstrainedParametersRandomValues
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e6721
+compbio.runner.msa.TcoffeeParametersTester@36bf79168
 
 
 
 testCreateNumParameterWithoutValidValue
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix
 Description: DNA weight matrix
 URL: null
@@ -496,8 +561,8 @@ Is required: false
  Without possible values! Please define possible value first!
 	at compbio.metadata.Parameter.setDefaultValue(Parameter.java:234)
 	at compbio.metadata.RunnerConfigTester.testCreateNumParameterWithoutValidValue(RunnerConfigTester.java:222)
-... Removed 22 stack frames
Click to show all stack frames
-
java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix
+... Removed 22 stack frames
Click to show all stack frames
+
java.lang.IllegalStateException: Attempting to set default value for parameter: Option name: Matrix
 Description: DNA weight matrix
 URL: null
 Is required: false
@@ -531,7 +596,7 @@ Is required: false
 
 
 testCreateParameter
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1
 Description: Protein weight matrix
 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
@@ -547,8 +612,8 @@ PAM
 
 	at compbio.metadata.Parameter.setDefaultValue(Parameter.java:240)
 	at compbio.metadata.RunnerConfigTester.testCreateParameter(RunnerConfigTester.java:93)
-... Removed 22 stack frames
Click to show all stack frames
-
compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1
+... Removed 22 stack frames
Click to show all stack frames
+
compbio.metadata.WrongParameterException: Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1
 Description: Protein weight matrix
 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
 Is required: true
@@ -589,197 +654,217 @@ PAM
 
 
 testCreateParameterWithValidValueConstrain
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
 
 
 testDeepCleanSequence
Test class:Ant test
-compbio.data.sequence.SequenceUtilTester@ad722000
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
 
 
 
 testDefaultParameters
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba0
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testDefaultParameters
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc7224320
+compbio.runner.msa.MafftParametersTester@35a8d4604
 
 
 
 testDefaultParameters
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a30
+compbio.runner.msa.MuscleParametersTester@535c97e40
 
 
 
 testDefaultParameters
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc976614
+compbio.runner.msa.ProbconsParametersTester@3823bdd14
 
 
 
 testDefaultParameters
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e6710
+compbio.runner.msa.TcoffeeParametersTester@36bf79163
 
 
 
 testExecute
Test class:Ant test
-compbio.runner.msa.MafftTester@259a84160
+compbio.runner.msa.MafftTester@5f0f06250
 
 
 
 testExecute
Test class:Ant test
-compbio.runner.msa.ProbconsTester@5a57e7870
+compbio.runner.msa.ProbconsTester@328301220
 
 
 
 testExecute
Test class:Ant test
-compbio.runner.msa.TcoffeeTester@7df1bd980
+compbio.runner.msa.TcoffeeTester@54a6af6e0
 
 
 
 testGet
Test class:Ant test
-compbio.engine.FilePullerTester@5fa80aea0
+compbio.engine.FilePullerTester@1e6704790
 
 
 
 testGetAsyncEngine
Test class:Ant test
-compbio.engine.EngineConfiguratorTester@31f9338f0
+compbio.engine.EngineConfiguratorTester@4513e9fd0
 
 
 
 testGetClassPath
Test class:Ant test
-compbio.engine.client.PathValidatorTester@5253c3f50
+compbio.engine.client.PathValidatorTester@729b16700
 
 
 
 testGetDelay
Test class:Ant test
-compbio.engine.FilePullerTester@5fa80aea0
+compbio.engine.FilePullerTester@1e6704790
 
 
 
 testGetDirectory
-compbio.engine.conf.DirectoryManagerTester@1c1474ea0
+compbio.engine.conf.DirectoryManagerTester@79fcf7900
 
 
 
 testGetDirectory
-compbio.engine.conf.DirectoryManagerTester@1c1474ea0
+compbio.engine.conf.DirectoryManagerTester@79fcf7900
 
 
 
 testGetDirectory
-compbio.engine.conf.DirectoryManagerTester@1c1474ea0
+compbio.engine.conf.DirectoryManagerTester@79fcf7900
 
 
 
 testGetDirectory
-compbio.engine.conf.DirectoryManagerTester@1c1474ea0
+compbio.engine.conf.DirectoryManagerTester@79fcf7900
 
 
 
 testGetFormattedFasta
Test class:Ant test
-compbio.data.sequence.FastaSequenceTester@ec0a9f90
+compbio.data.sequence.FastaSequenceTester@5ec241930
 
 
 
 testGetJobStatus
Test class:Ant test
-compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@24e33e1820
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@57c8b24d4
+
+
+
+testGetStats
Test class:Ant test
+compbio.stat.servlet.util.StatCollectionTester@26c1186f0
 
 
 
 testGetStatus
-compbio.engine.local.AsyncLocalRunnerTester@7461f53320
+compbio.engine.local.AsyncLocalRunnerTester@31df5f2119
 
 
 
 testGetStatus
-compbio.engine.local.AsyncLocalRunnerTester@7461f53320
+compbio.engine.local.AsyncLocalRunnerTester@31df5f2119
 
 
 
 testGetStatus
-compbio.engine.local.AsyncLocalRunnerTester@7461f53321
+compbio.engine.local.AsyncLocalRunnerTester@31df5f2119
 
 
 
 testGetStatus
-compbio.engine.local.AsyncLocalRunnerTester@7461f53340
+compbio.engine.local.AsyncLocalRunnerTester@31df5f2119
 
 
 
 testGetStatus
-compbio.engine.local.AsyncLocalRunnerTester@7461f53320
+compbio.engine.local.AsyncLocalRunnerTester@31df5f2119
 
 
 
 testGetSyncEngine
Test class:Ant test
-compbio.engine.EngineConfiguratorTester@31f9338f0
+compbio.engine.EngineConfiguratorTester@4513e9fd0
 
 
 
 testGetTestArgsCommand
Test class:Ant test
-compbio.runner._impl.OBTester@327124af0
+compbio.runner._impl.OBTester@2658dd2d0
 
 
 
 testGetTestArgsCommand
Test class:Ant test
-compbio.runner._impl.RPSBlastTester@221f77080
+compbio.runner._impl.RPSBlastTester@1420c9060
 
 
 
 testGetTestCommand
Test class:Ant test
-compbio.runner._impl.MclTester@4402a6ff0
+compbio.runner._impl.MclTester@f35f44e0
 
 
 
 testGetTestCommand
Test class:Ant test
-compbio.runner._impl.NetNglycTester@a21d23b0
+compbio.runner._impl.NetNglycTester@1f3a34af0
 
 
 
 testGetTestCommand
Test class:Ant test
-compbio.runner._impl.OBTester@327124af0
+compbio.runner._impl.OBTester@2658dd2d0
 
 
 
 testGetTestCommand
Test class:Ant test
-compbio.runner._impl.RPSBlastTester@221f77080
+compbio.runner._impl.RPSBlastTester@1420c9060
 
 
 
 testGetTestCommand
Test class:Ant test
-compbio.runner._impl.RonnTester@3fbfbfb80
+compbio.runner._impl.RonnTester@746db33c0
 
 
 
 testGetTestCommand
Test class:Ant test
-compbio.runner._impl.Tmhmm2Tester@45c3e9ba0
+compbio.runner._impl.Tmhmm2Tester@4e1263db0
+
+
+
+testHasCompleted
Test class:Ant test
+compbio.stat.collector.ExecutionStatCollectorTester@b478a2d0
 
 
 
 testIsAbsolutePath
Test class:Ant test
-compbio.engine.client.PathValidatorTester@5253c3f50
+compbio.engine.client.PathValidatorTester@729b16700
+
+
+
+testLimitExceeded
Test class:Ant test
+compbio.runner.msa.LimitTester@2bdafb4e0
+
+
+
+testLoadBalance
Test class:Ant test
+compbio.engine.LoadBalancerTester@7d56b3860
 
 
 
 testLoadLimits
Test class:Ant test
-compbio.runner.msa.LimitTester@1b0c6cfc0
+compbio.runner.msa.LimitTester@2bdafb4e0
 
 
 
 testMarshalling
Test class:Ant test
-compbio.engine.conf.RunnerConfigMarshallerTester@710ca2080
+compbio.engine.conf.RunnerConfigMarshallerTester@29a7789c0
 
 
 
 testMarshalling
Test class:Ant test
-compbio.metadata.OptionMarshallerTester@372c95570
+compbio.metadata.OptionMarshallerTester@6087e7040
 
javax.xml.bind.MarshalException
  - with linked exception:
 [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.]
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
 	at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
 	at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
 	at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140)
@@ -794,25 +879,25 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
 	at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
 	at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
 	at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
-	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124)
-	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
-	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
+	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
+	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
+	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
 	... 26 more
-... Removed 22 stack frames
Click to show all stack frames
-
javax.xml.bind.MarshalException
+... Removed 22 stack frames
Click to show all stack frames
+
javax.xml.bind.MarshalException
  - with linked exception:
 [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.]
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
 	at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
 	at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
 	at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140)
@@ -849,32 +934,32 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
 	at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
 	at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
 	at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
-	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124)
-	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
-	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
+	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
+	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
+	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
 	... 26 more
 

 
 
 testMultipleCancelLocally
Test class:Ant test
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
 	at compbio.engine.local.AsyncLocalRunner.getResults(AsyncLocalRunner.java:130)
 	at compbio.engine.local.AsyncLocalRunnerTester.testMultipleCancelLocally(AsyncLocalRunnerTester.java:239)
-... Removed 22 stack frames
Click to show all stack frames
-
java.util.concurrent.CancellationException
+... Removed 22 stack frames
Click to show all stack frames
+
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
@@ -906,15 +991,15 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
 
 
 testMultipleCancelLocally
Test class:Ant test
-compbio.engine.local.LocalRunnerTester@4b2922f60
+compbio.engine.local.LocalRunnerTester@3fde891b0
 
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
 	at compbio.engine.local.LocalRunner.waitForResult(LocalRunner.java:99)
 	at compbio.engine.local.LocalRunnerTester.testMultipleCancelLocally(LocalRunnerTester.java:114)
-... Removed 22 stack frames
Click to show all stack frames
-
java.util.concurrent.CancellationException
+... Removed 22 stack frames
Click to show all stack frames
+
java.util.concurrent.CancellationException
 	at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
 	at java.util.concurrent.FutureTask.get(FutureTask.java:83)
 	at compbio.engine.local.LocalEngineUtil.getResults(LocalEngineUtil.java:108)
@@ -946,12 +1031,12 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
 
 
 testNcore
Test class:Ant test
-compbio.runner.msa.TcoffeeTester@7df1bd980
+compbio.runner.msa.TcoffeeTester@54a6af6e0
 
 
 
 testOptionNoDefaultValidate
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1
 Description: Protein weight matrix
 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
@@ -963,8 +1048,8 @@ Option Names:
 
 	at compbio.metadata.Option.validate(Option.java:317)
 	at compbio.metadata.RunnerConfigTester.testOptionNoDefaultValidate(RunnerConfigTester.java:149)
-... Removed 22 stack frames
Click to show all stack frames
-
javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1
+... Removed 22 stack frames
Click to show all stack frames
+
javax.xml.bind.ValidationException: Default value is required as multiple optionNames are defined for option: Option name: Matrix1
 Description: Protein weight matrix
 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
 Is required: true
@@ -1001,7 +1086,7 @@ Option Names:
 
 
 testOptionSetInvalidValue
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1
 Description: Protein weight matrix
 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
@@ -1013,8 +1098,8 @@ Option Names:
 
 	at compbio.metadata.Option.setDefaultValue(Option.java:130)
 	at compbio.metadata.RunnerConfigTester.testOptionSetInvalidValue(RunnerConfigTester.java:172)
-... Removed 22 stack frames
Click to show all stack frames
-
compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1
+... Removed 22 stack frames
Click to show all stack frames
+
compbio.metadata.WrongParameterException: Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1
 Description: Protein weight matrix
 URL: http://www.compbio.dundee.ac.uk/users/pvtroshin/ws/Index.html
 Is required: true
@@ -1051,272 +1136,437 @@ Option Names:
 
 
 testOptionToCommand
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
 
 
 testOptions
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba2
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testOptions
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722434
+compbio.runner.msa.MafftParametersTester@35a8d4600
 
 
 
 testOptions
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a32
+compbio.runner.msa.MuscleParametersTester@535c97e41
 
 
 
 testOptions
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc97660
+compbio.runner.msa.ProbconsParametersTester@3823bdd10
 
 
 
 testOptions
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e670
+compbio.runner.msa.TcoffeeParametersTester@36bf79160
 
 
 
 testOptionsLocally
Test class:Ant test
-compbio.runner.msa.ClustalWTester@4125d61e1
+compbio.runner.msa.ClustalWTester@3a0b53e0
 
 
 
 testOptionsToCommand
Test class:Ant test
-compbio.engine.client.CommandBuilderTester@6bdc64a50
+compbio.engine.client.CommandBuilderTester@25cbfa420
 
 
 
 testParameterToCommand
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
 
 
 testParameters
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba2
+compbio.runner.msa.ClustalWParametersTester@74e2ad161
 
 
 
 testParameters
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722432
+compbio.runner.msa.MafftParametersTester@35a8d4601
 
 
 
 testParameters
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a34
+compbio.runner.msa.MuscleParametersTester@535c97e41
 
 
 
 testParameters
Test class:Ant test
-compbio.runner.msa.ProbconsParametersTester@78dc97661
+compbio.runner.msa.ProbconsParametersTester@3823bdd11
 
 
 
 testParameters
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e6712
+compbio.runner.msa.TcoffeeParametersTester@36bf79163
 
 
 
 testParser
Test class:Ant test
-compbio.engine.cluster.drmaa.UtilTester@22e909430
+compbio.engine.cluster.drmaa.UtilTester@43f4ebd0
+
+
+
+testPersistance
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e80
+
+
+
+testPersistance
Test class:Ant test
+compbio.runner.disorder.DisemblTester@5d4696581
+
+
+
+testPersistance
Test class:Ant test
+compbio.runner.disorder.GlobPlotTester@45389b3f0
+
+
+
+testPersistance
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a0
+
+
+
+testPersistance
Test class:Ant test
+compbio.runner.disorder.JronnTester@3d3b5a3a18
 
 
 
 testPersistance
Test class:Ant test
-compbio.runner.msa.ClustalWTester@4125d61e0
+compbio.runner.msa.ClustalWTester@3a0b53e0
 
 
 
 testPersistance
Test class:Ant test
-compbio.runner.msa.MafftTester@259a84161
+compbio.runner.msa.MafftTester@5f0f06250
 
 
 
 testPersistance
Test class:Ant test
-compbio.runner.msa.MuscleTester@37b994de0
+compbio.runner.msa.MuscleTester@63f8247d0
 
 
 
 testPersistance
Test class:Ant test
-compbio.runner.msa.ProbconsTester@5a57e7870
+compbio.runner.msa.ProbconsTester@328301220
 
 
 
 testPersistance
Test class:Ant test
-compbio.runner.msa.TcoffeeTester@7df1bd981
+compbio.runner.msa.TcoffeeTester@54a6af6e0
+
+
+
+testPresetWithMuptiOptions
Test class:Ant test
+compbio.metadata.PresetTester@7a4fe91e0
 
 
 
 testPresets
Test class:Ant test
-compbio.runner.msa.ClustalWParametersTester@132803ba0
+compbio.runner.msa.ClustalWParametersTester@74e2ad160
 
 
 
 testPresets
Test class:Ant test
-compbio.runner.msa.MafftParametersTester@4cc722432
+compbio.runner.msa.MafftParametersTester@35a8d4600
 
 
 
 testPresets
Test class:Ant test
-compbio.runner.msa.MuscleParametersTester@4355d3a30
+compbio.runner.msa.MuscleParametersTester@535c97e40
 
 
 
 testPresets
Test class:Ant test
-compbio.runner.msa.TcoffeeParametersTester@41217e671
+compbio.runner.msa.TcoffeeParametersTester@36bf79160
 
 
 
 testProteinSequenceGeneration
Test class:Ant test
-compbio.data.sequence.FastaSequenceGeneratorTester@163b4b1e0
+compbio.data.sequence.FastaSequenceGeneratorTester@3a98350a0
 
 
 
 testPull
Test class:Ant test
-compbio.engine.FilePullerTester@5fa80aea0
+compbio.engine.FilePullerTester@1e6704790
 
 
 
 testQueue
Test class:Ant test
-compbio.engine.cluster.dundee._QueueTester@715f1f9c0
+compbio.engine.cluster.dundee._QueueTester@584a5c780
+
+
+
+testReadAAConResults
Test class:Ant test
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
 
 
 
 testReadClustalFile
Test class:Ant test
-compbio.data.sequence.ClustalAlignmentUtilTester@38c522000
+compbio.data.sequence.ClustalAlignmentUtilTester@44739f3f0
 
 
 
 testReadClustalFileLongNames
Test class:Ant test
-compbio.data.sequence.ClustalAlignmentUtilTester@38c522000
+compbio.data.sequence.ClustalAlignmentUtilTester@44739f3f0
 
 
 
 testReadClustalFileShortNames
Test class:Ant test
-compbio.data.sequence.ClustalAlignmentUtilTester@38c522000
+compbio.data.sequence.ClustalAlignmentUtilTester@44739f3f0
+
+
+
+testReadDisemblResults
Test class:Ant test
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
+
+
+
+testReadGlobPlotResults
Test class:Ant test
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
+
+
+
+testReadIUPredForGlobDomain
Test class:Ant test
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
+
+
+
+testReadIUPredForShortAndLongDisorder
Test class:Ant test
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
+
+
+
+testReadResults
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a0
 
 
 
 testReadWriteFasta
Test class:Ant test
-compbio.data.sequence.SequenceUtilTester@ad722000
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
+
+
+
+testRunLocally
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e80
+
+
+
+testRunLocally
Test class:Ant test
+compbio.runner.disorder.DisemblTester@5d4696580
+
+
+
+testRunLocally
Test class:Ant test
+compbio.runner.disorder.GlobPlotTester@45389b3f0
+
+
+
+testRunLocally
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a0
+
+
+
+testRunLocally
Test class:Ant test
+compbio.runner.disorder.JronnTester@3d3b5a3a18
 
 
 
 testRunLocally
Test class:Ant test
-compbio.runner.msa.ClustalWTester@4125d61e0
+compbio.runner.msa.ClustalWTester@3a0b53e0
 
 
 
 testRunLocally
Test class:Ant test
-compbio.runner.msa.MuscleTester@37b994de0
+compbio.runner.msa.MuscleTester@63f8247d0
+
+
+
+testRunLocallyOnTwoCpu
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e80
+
+
+
+testRunLocallyOnTwoCpu
Test class:Ant test
+compbio.runner.disorder.JronnTester@3d3b5a3a7
+
+
+
+testRunLocallyWithParams
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a0
+
+
+
+testRunLocallyWithPreset
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e80
+
+
+
+testRunOnCluster
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e83
+
+
+
+testRunOnCluster
Test class:Ant test
+compbio.runner.disorder.DisemblTester@5d4696582
+
+
+
+testRunOnCluster
Test class:Ant test
+compbio.runner.disorder.GlobPlotTester@45389b3f2
+
+
+
+testRunOnCluster
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a3
+
+
+
+testRunOnCluster
Test class:Ant test
+compbio.runner.disorder.JronnTester@3d3b5a3a13
 
 
 
 testRunOnCluster
Test class:Ant test
-compbio.runner.msa.ClustalWTester@4125d61e15
+compbio.runner.msa.ClustalWTester@3a0b53e5
 
 
 
 testRunOnCluster
Test class:Ant test
-compbio.runner.msa.MuscleTester@37b994de8
+compbio.runner.msa.MuscleTester@63f8247d3
+
+
+
+testRunOnClusterAsync
Test class:Ant test
+compbio.runner.conservation.AAConTester@1959e6e85
+
+
+
+testRunOnClusterAsync
Test class:Ant test
+compbio.runner.disorder.DisemblTester@5d4696586
+
+
+
+testRunOnClusterAsync
Test class:Ant test
+compbio.runner.disorder.GlobPlotTester@45389b3f6
+
+
+
+testRunOnClusterAsync
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a6
+
+
+
+testRunOnClusterAsync
Test class:Ant test
+compbio.runner.disorder.JronnTester@3d3b5a3a11
 
 
 
 testRunOnClusterAsyncCheckStatusLongPoolingTime
Test class:Ant test
-compbio.runner.msa.MafftTester@259a841621
+compbio.runner.msa.MafftTester@5f0f06255
 
 
 
 testRunWithMatrix
Test class:Ant test
-compbio.runner.msa.ClustalWTester@4125d61e0
+compbio.runner.msa.ClustalWTester@3a0b53e0
 
 
 
 testSchemaFromCodeGeneration
Test class:Ant test
-compbio.engine.conf.RunnerConfigMarshallerTester@710ca2080
+compbio.engine.conf.RunnerConfigMarshallerTester@29a7789c0
 
 
 
 testSetInputTester
Test class:Ant test
-compbio.runner.msa.MafftTester@259a84160
+compbio.runner.msa.MafftTester@5f0f06250
 
 
 
 testSetInputTester
Test class:Ant test
-compbio.runner.msa.ProbconsTester@5a57e7870
+compbio.runner.msa.ProbconsTester@328301220
+
+
+
+testSetParameter
Test class:Ant test
+compbio.runner.disorder.IUPredTester@758689a0
 
 
 
 testSpaceDelimiterExecutable
Test class:Ant test
-compbio.engine.client.CommandBuilderTester@6bdc64a50
+compbio.engine.client.CommandBuilderTester@25cbfa420
 
 
 
 testSubmit
Test class:Ant test
-compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@24e33e1818
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester@57c8b24d3
 
 
 
 testSubmit
Test class:Ant test
-compbio.engine.cluster.drmaa.DrmaaClusterEngineTester@4301ac9317
+compbio.engine.cluster.drmaa.DrmaaClusterEngineTester@39320a413
 
 
 
 testSubmitLocally
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
 
 
 testSubmitLocally
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
 
 
 testSubmitLocally
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
 
 
 testSubmitLocally
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
 
 
 testSubmitLocally
-compbio.engine.local.AsyncLocalRunnerTester@7461f5330
+compbio.engine.local.AsyncLocalRunnerTester@31df5f210
 
 
 
 testTaskList
Test class:Ant test
-compbio.engine.cluster.drmaa.ClusterSessionTester@7966340c8
+compbio.engine.cluster.drmaa.ClusterSessionTester@23de4dd83
 
 
 
 testUnMarshalling
Test class:Ant test
-compbio.engine.conf.RunnerConfigMarshallerTester@710ca2080
+compbio.engine.conf.RunnerConfigMarshallerTester@29a7789c0
 
 
 
 testUnMarshalling
Test class:Ant test
-compbio.metadata.OptionMarshallerTester@372c95570
+compbio.metadata.OptionMarshallerTester@6087e7040
+
+
+
+testUpdateStatTester
Test class:Ant test
+compbio.stat.collector.ExecutionStatCollectorTester@b478a2d35
 
 
 
 testValidate
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
 
 
 testValidateBoundaryConstrainCheck
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
 
 
 testValidateLowerBoundaryConstrainCheck
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
 Min: -10.12
 Max: 0
@@ -1334,8 +1584,8 @@ Max: 0
 
 	at compbio.metadata.Parameter.setDefaultValue(Parameter.java:248)
 	at compbio.metadata.RunnerConfigTester.testValidateLowerBoundaryConstrainCheck(RunnerConfigTester.java:268)
-... Removed 22 stack frames
Click to show all stack frames
-
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
+... Removed 22 stack frames
Click to show all stack frames
+
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
 Min: -10.12
 Max: 0
 
@@ -1378,7 +1628,7 @@ Max: 0
 
 
 testValidateUpperBoundaryConstrainCheck
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
 Min: -10.12
 Max: 0
@@ -1396,8 +1646,8 @@ Max: 0
 
 	at compbio.metadata.Parameter.setDefaultValue(Parameter.java:248)
 	at compbio.metadata.RunnerConfigTester.testValidateUpperBoundaryConstrainCheck(RunnerConfigTester.java:296)
-... Removed 22 stack frames
Click to show all stack frames
-
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
+... Removed 22 stack frames
Click to show all stack frames
+
compbio.metadata.WrongParameterException: Attempting to set default value outside boundaries defined by the constraint: Type: Float
 Min: -10.12
 Max: 0
 
@@ -1440,13 +1690,13 @@ Max: 0
 
 
 testValidateValueConstrain
Test class:Ant test
-compbio.metadata.RunnerConfigTester@58ca37830
+compbio.metadata.RunnerConfigTester@1451ef4e0
 
javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float
 
 	at compbio.metadata.ValueConstrain.validate(ValueConstrain.java:208)
 	at compbio.metadata.RunnerConfigTester.testValidateValueConstrain(RunnerConfigTester.java:341)
-... Removed 22 stack frames
Click to show all stack frames
-
javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float
+... Removed 22 stack frames
Click to show all stack frames
+
javax.xml.bind.ValidationException: Both boundaries (min and max) is undefined for ValueConstrain: Type: Float
 
 	at compbio.metadata.ValueConstrain.validate(ValueConstrain.java:208)
 	at compbio.metadata.RunnerConfigTester.testValidateValueConstrain(RunnerConfigTester.java:341)
@@ -1476,20 +1726,20 @@ Max: 0
 
 
 testValidation
Test class:Ant test
-compbio.engine.conf.RunnerConfigMarshallerTester@710ca2080
+compbio.engine.conf.RunnerConfigMarshallerTester@29a7789c0
 
 
 
 testValidationOnMarshalling
Test class:Ant test
-compbio.engine.conf.RunnerConfigMarshallerTester@710ca2080
+compbio.engine.conf.RunnerConfigMarshallerTester@29a7789c0
 
javax.xml.bind.MarshalException
  - with linked exception:
 [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.]
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
 	at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
 	at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
-	at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:258)
+	at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259)
 Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.
 	at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:195)
 	at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.error(ErrorHandlerWrapper.java:131)
@@ -1501,28 +1751,28 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
 	at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
 	at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
 	at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
-	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124)
-	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
-	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
+	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
+	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
+	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
 	... 26 more
-... Removed 22 stack frames
Click to show all stack frames
-
javax.xml.bind.MarshalException
+... Removed 22 stack frames
Click to show all stack frames
+
javax.xml.bind.MarshalException
  - with linked exception:
 [org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.]
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
 	at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
 	at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
-	at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:258)
+	at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259)
 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
@@ -1556,64 +1806,69 @@ Caused by: org.xml.sax.SAXParseException: cvc-complex-type.2.4.a: Invalid conten
 	at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
 	at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
 	at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
-	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124)
-	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
-	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
-	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592)
-	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320)
-	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493)
-	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
+	at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
+	at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
+	at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
+	at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
+	at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
+	at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
+	at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
 	... 26 more
 

 
 
+testVerifyJobsCount
Test class:Ant test
+compbio.stat.collector.StatDBTester@5c096240
+
+
+
 testgetAllOptions
Test class:Ant test
-compbio.metadata.OptionCombinatorTester@79b66b060
+compbio.metadata.OptionCombinatorTester@2afb6c5f0
 
 
 
 testgetAllParameters
Test class:Ant test
-compbio.metadata.OptionCombinatorTester@79b66b060
+compbio.metadata.OptionCombinatorTester@2afb6c5f0
 
 
 
 testisNonAmbNucleotideSequence
Test class:Ant test
-compbio.data.sequence.SequenceUtilTester@ad722000
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
 
 
 
 testisProteinSequence
Test class:Ant test
-compbio.data.sequence.SequenceUtilTester@ad722000
+compbio.data.sequence.SequenceUtilTester@235f4a7f0
 
 
 
 validateClustalConfiguration
Test class:Ant test
-compbio.engine.conf.PropertyHelperManagerTester@307bd0d0
+compbio.engine.conf.PropertyHelperManagerTester@4ee14d810
 
 
 
 validateMafftConfiguration
Test class:Ant test
-compbio.engine.conf.PropertyHelperManagerTester@307bd0d0
+compbio.engine.conf.PropertyHelperManagerTester@4ee14d810
 
 
 
 validateMuscleConfiguration
Test class:Ant test
-compbio.engine.conf.PropertyHelperManagerTester@307bd0d0
+compbio.engine.conf.PropertyHelperManagerTester@4ee14d810
 
 
 
 validatePresets
Test class:Ant test
-compbio.metadata.PresetTester@50009f0d0
+compbio.metadata.PresetTester@7a4fe91e0
 
 
 
 validateTcoffeeConfiguration
Test class:Ant test
-compbio.engine.conf.PropertyHelperManagerTester@307bd0d0
+compbio.engine.conf.PropertyHelperManagerTester@4ee14d810