X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ftests%2FAnt%20suite%2FAnt%20test.xml;h=1182c37f0abd72fee4fac23e65b35ecbf4a13f84;hb=f1bdd8da517901fe1d7957d388ea579ad1fbaa3b;hp=7af5c7671e5237ea1a49ee50e211eaf8685c99f0;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/website/tests/Ant suite/Ant test.xml b/website/tests/Ant suite/Ant test.xml
index 7af5c76..1182c37 100644
--- a/website/tests/Ant suite/Ant test.xml	
+++ b/website/tests/Ant suite/Ant test.xml	
@@ -1,169 +1,220 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<testsuite name="Ant test" failures="0" tests="165" time="524.407" errors="0">
+<testsuite name="Ant test" failures="0" tests="216" time="453.928" errors="0">
   <properties/>
-  <testcase name="testPull" time="0.45" classname="compbio.engine.FilePullerTester"/>
-  <testcase name="testCache" time="6.006" classname="compbio.engine.FilePullerTester"/>
-  <testcase name="testArguments" time="3.518" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testPull" time="0.014" classname="compbio.engine.FilePullerTester"/>
+  <testcase name="testCache" time="6.008" classname="compbio.engine.FilePullerTester"/>
+  <testcase name="testArguments" time="1.649" classname="compbio.runner.msa.ClustalWParametersTester"/>
   <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testConstrainedParametersMaxValues" time="1.835" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testConstrainedParametersMinValues" time="1.232" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testConstrainedParametersRandomValues" time="3.105" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testDefaultParameters" time="0.502" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testOptions" time="2.109" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testParameters" time="2.68" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testPresets" time="0.177" classname="compbio.runner.msa.ClustalWParametersTester"/>
-  <testcase name="testReadClustalFile" time="0.022" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
-  <testcase name="testReadClustalFileLongNames" time="0.052" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
-  <testcase name="testReadClustalFileShortNames" time="0.054" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
-  <testcase name="testProteinSequenceGeneration" time="0.0080" classname="compbio.data.sequence.FastaSequenceGeneratorTester"/>
+  <testcase name="testConstrainedParametersMaxValues" time="0.678" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testConstrainedParametersMinValues" time="0.682" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testConstrainedParametersRandomValues" time="0.672" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testDefaultParameters" time="0.129" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testOptions" time="0.396" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testParameters" time="1.074" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testPresets" time="0.129" classname="compbio.runner.msa.ClustalWParametersTester"/>
+  <testcase name="testReadClustalFile" time="0.012" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
+  <testcase name="testReadClustalFileLongNames" time="0.019" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
+  <testcase name="testReadClustalFileShortNames" time="0.014" classname="compbio.data.sequence.ClustalAlignmentUtilTester"/>
+  <testcase name="test" time="0.018" classname="compbio.data.sequence.FastaReaderTester"/>
+  <testcase name="testProteinSequenceGeneration" time="0.0070" classname="compbio.data.sequence.FastaSequenceGeneratorTester"/>
   <testcase name="testGetFormattedFasta" time="0.0" classname="compbio.data.sequence.FastaSequenceTester"/>
+  <testcase name="loadJronnFile" time="0.027" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testCleanProteinSequence" time="0.0010" classname="compbio.data.sequence.SequenceUtilTester"/>
   <testcase name="testCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
   <testcase name="testDeepCleanSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
-  <testcase name="testReadWriteFasta" time="0.016" classname="compbio.data.sequence.SequenceUtilTester"/>
-  <testcase name="testisNonAmbNucleotideSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testReadAAConResults" time="0.269" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testReadDisemblResults" time="0.125" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testReadGlobPlotResults" time="0.104" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testReadIUPredForGlobDomain" time="0.0060" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testReadIUPredForShortAndLongDisorder" time="0.036" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testReadWriteFasta" time="0.0080" classname="compbio.data.sequence.SequenceUtilTester"/>
+  <testcase name="testisNonAmbNucleotideSequence" time="0.0010" classname="compbio.data.sequence.SequenceUtilTester"/>
   <testcase name="testisProteinSequence" time="0.0" classname="compbio.data.sequence.SequenceUtilTester"/>
-  <testcase name="testGetAsyncEngine" time="0.296" classname="compbio.engine.EngineConfiguratorTester"/>
-  <testcase name="testGetSyncEngine" time="0.0" classname="compbio.engine.EngineConfiguratorTester"/>
+  <testcase name="testGetAsyncEngine" time="0.012" classname="compbio.engine.EngineConfiguratorTester"/>
+  <testcase name="testGetSyncEngine" time="0.0010" classname="compbio.engine.EngineConfiguratorTester"/>
   <testcase name="testGetDelay" time="0.0" classname="compbio.engine.FilePullerTester"/>
-  <testcase name="testGet" time="0.046" classname="compbio.engine.FilePullerTester"/>
-  <testcase name="test" time="5.187" classname="compbio.engine.PulledFileCacheTester"/>
+  <testcase name="testGet" time="0.0020" classname="compbio.engine.FilePullerTester"/>
+  <testcase name="testLoadBalance" time="0.057" classname="compbio.engine.LoadBalancerTester"/>
+  <testcase name="test" time="5.011" classname="compbio.engine.PulledFileCacheTester"/>
   <testcase name="testCommandBuilding" time="0.0010" classname="compbio.engine.client.CommandBuilderTester"/>
-  <testcase name="testOptionsToCommand" time="0.567" classname="compbio.engine.client.CommandBuilderTester"/>
+  <testcase name="testOptionsToCommand" time="0.04" classname="compbio.engine.client.CommandBuilderTester"/>
   <testcase name="testSpaceDelimiterExecutable" time="0.0" classname="compbio.engine.client.CommandBuilderTester"/>
-  <testcase name="testGetClassPath" time="0.234" classname="compbio.engine.client.PathValidatorTester"/>
   <testcase name="testIsAbsolutePath" time="0.0" classname="compbio.engine.client.PathValidatorTester"/>
-  <testcase name="testTaskList" time="8.964" classname="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
-  <testcase name="testCancel" time="1.273" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
-  <testcase name="testGetJobStatus" time="20.778" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
-  <testcase name="testSubmit" time="18.714" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
-  <testcase name="testCancel" time="1.587" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
-  <testcase name="testSubmit" time="17.835" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
-  <testcase name="testParser" time="0.0" classname="compbio.engine.cluster.drmaa.UtilTester"/>
+  <testcase name="testGetClassPath" time="0.0010" classname="compbio.engine.client.PathValidatorTester"/>
+  <testcase name="testTaskList" time="3.953" classname="compbio.engine.cluster.drmaa.ClusterSessionTester"/>
+  <testcase name="testCancel" time="1.257" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
+  <testcase name="testGetJobStatus" time="4.765" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
+  <testcase name="testSubmit" time="3.976" classname="compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester"/>
+  <testcase name="testCancel" time="1.538" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
+  <testcase name="testSubmit" time="3.508" classname="compbio.engine.cluster.drmaa.DrmaaClusterEngineTester"/>
+  <testcase name="testParser" time="0.0010" classname="compbio.engine.cluster.drmaa.UtilTester"/>
   <testcase name="testQueue" time="0.0" classname="compbio.engine.cluster.dundee._QueueTester"/>
-  <testcase name="testGetDirectory" time="0.1" classname="compbio.engine.conf.DirectoryManagerTester"/>
   <testcase name="testGetDirectory" time="0.104" classname="compbio.engine.conf.DirectoryManagerTester"/>
-  <testcase name="testGetDirectory" time="0.11" classname="compbio.engine.conf.DirectoryManagerTester"/>
-  <testcase name="testGetDirectory" time="0.103" classname="compbio.engine.conf.DirectoryManagerTester"/>
-  <testcase name="testClusterEngineConf" time="0.104" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
-  <testcase name="validateClustalConfiguration" time="0.043" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
-  <testcase name="validateMafftConfiguration" time="0.0010" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
-  <testcase name="validateMuscleConfiguration" time="0.0040" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
-  <testcase name="validateTcoffeeConfiguration" time="0.0040" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
-  <testcase name="testMarshalling" time="0.02" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
-  <testcase name="testSchemaFromCodeGeneration" time="0.504" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
-  <testcase name="testUnMarshalling" time="0.58" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
-  <testcase name="testValidation" time="0.636" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
-  <testcase name="testValidationOnMarshalling" time="0.011" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
-  <testcase name="testAsyncCancelOperation" time="0.048" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testAsyncRetrievOperation" time="0.56" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testCancelCompletedTaskLocally" time="3.053" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testCancelLocally" time="0.027" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testGetStatus" time="20.872" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testGetStatus" time="20.915" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testGetStatus" time="21.332" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testGetStatus" time="40.987" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testGetStatus" time="20.863" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testMultipleCancelLocally" time="0.267" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testSubmitLocally" time="0.125" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testSubmitLocally" time="0.22" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testSubmitLocally" time="0.176" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testSubmitLocally" time="0.482" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testSubmitLocally" time="0.634" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
-  <testcase name="testCancelCompletedTaskLocally" time="0.336" classname="compbio.engine.local.LocalRunnerTester"/>
-  <testcase name="testCancelLocally" time="0.02" classname="compbio.engine.local.LocalRunnerTester"/>
-  <testcase name="testMultipleCancelLocally" time="0.058" classname="compbio.engine.local.LocalRunnerTester"/>
+  <testcase name="testGetDirectory" time="0.101" classname="compbio.engine.conf.DirectoryManagerTester"/>
+  <testcase name="testGetDirectory" time="0.098" classname="compbio.engine.conf.DirectoryManagerTester"/>
+  <testcase name="testGetDirectory" time="0.097" classname="compbio.engine.conf.DirectoryManagerTester"/>
+  <testcase name="testClusterEngineConf" time="0.0010" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
+  <testcase name="validateClustalConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
+  <testcase name="validateMafftConfiguration" time="0.0020" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
+  <testcase name="validateMuscleConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
+  <testcase name="validateTcoffeeConfiguration" time="0.0" classname="compbio.engine.conf.PropertyHelperManagerTester"/>
+  <testcase name="testMarshalling" time="0.0040" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
+  <testcase name="testSchemaFromCodeGeneration" time="0.13" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
+  <testcase name="testUnMarshalling" time="0.017" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
+  <testcase name="testValidation" time="0.082" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
+  <testcase name="testValidationOnMarshalling" time="0.01" classname="compbio.engine.conf.RunnerConfigMarshallerTester"/>
+  <testcase name="testAsyncCancelOperation" time="0.017" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testAsyncRetrievOperation" time="0.124" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testCancelCompletedTaskLocally" time="3.017" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testCancelLocally" time="0.013" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testGetStatus" time="19.322" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testGetStatus" time="19.351" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testGetStatus" time="19.358" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testGetStatus" time="19.362" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testGetStatus" time="19.298" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testMultipleCancelLocally" time="0.054" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testSubmitLocally" time="0.122" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testSubmitLocally" time="0.151" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testSubmitLocally" time="0.17" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testSubmitLocally" time="0.187" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testSubmitLocally" time="0.105" classname="compbio.engine.local.AsyncLocalRunnerTester"/>
+  <testcase name="testCancelCompletedTaskLocally" time="0.049" classname="compbio.engine.local.LocalRunnerTester"/>
+  <testcase name="testCancelLocally" time="0.017" classname="compbio.engine.local.LocalRunnerTester"/>
+  <testcase name="testMultipleCancelLocally" time="0.044" classname="compbio.engine.local.LocalRunnerTester"/>
   <testcase name="testgetAllOptions" time="0.0010" classname="compbio.metadata.OptionCombinatorTester"/>
   <testcase name="testgetAllParameters" time="0.0030" classname="compbio.metadata.OptionCombinatorTester"/>
-  <testcase name="testMarshalling" time="0.058" classname="compbio.metadata.OptionMarshallerTester"/>
-  <testcase name="testUnMarshalling" time="0.386" classname="compbio.metadata.OptionMarshallerTester"/>
-  <testcase name="marshallPreset" time="0.899" classname="compbio.metadata.PresetTester"/>
+  <testcase name="testMarshalling" time="0.033" classname="compbio.metadata.OptionMarshallerTester"/>
+  <testcase name="testUnMarshalling" time="0.065" classname="compbio.metadata.OptionMarshallerTester"/>
+  <testcase name="marshallPreset" time="0.014" classname="compbio.metadata.PresetTester"/>
+  <testcase name="testPresetWithMuptiOptions" time="0.0010" classname="compbio.metadata.PresetTester"/>
   <testcase name="validatePresets" time="0.0010" classname="compbio.metadata.PresetTester"/>
-  <testcase name="testCreateNumParameterWithoutValidValue" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
+  <testcase name="testCreateNumParameterWithoutValidValue" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testCreateParameter" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testCreateParameterWithValidValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testOptionNoDefaultValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
-  <testcase name="testOptionSetInvalidValue" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
+  <testcase name="testOptionSetInvalidValue" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testOptionToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testParameterToCommand" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testValidate" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
-  <testcase name="testValidateBoundaryConstrainCheck" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
+  <testcase name="testValidateBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testValidateLowerBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
-  <testcase name="testValidateUpperBoundaryConstrainCheck" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
+  <testcase name="testValidateUpperBoundaryConstrainCheck" time="0.0010" classname="compbio.metadata.RunnerConfigTester"/>
   <testcase name="testValidateValueConstrain" time="0.0" classname="compbio.metadata.RunnerConfigTester"/>
-  <testcase name="testGetTestCommand" time="0.0010" classname="compbio.runner._impl.MclTester"/>
-  <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.NetNglycTester"/>
+  <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.MclTester"/>
+  <testcase name="testGetTestCommand" time="0.0010" classname="compbio.runner._impl.NetNglycTester"/>
   <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.OBTester"/>
   <testcase name="testGetTestArgsCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RPSBlastTester"/>
   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.RonnTester"/>
   <testcase name="testGetTestCommand" time="0.0" classname="compbio.runner._impl.Tmhmm2Tester"/>
-  <testcase name="readStatistics" time="1.178" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="readStatisticsClusterExecution" time="8.121" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="testConfigurationLoading" time="0.688" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="testOptionsLocally" time="1.932" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="testPersistance" time="0.431" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="testRunLocally" time="0.171" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="testRunOnCluster" time="15.937" classname="compbio.runner.msa.ClustalWTester"/>
-  <testcase name="testRunWithMatrix" time="0.824" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="readStatistics" time="1.493" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testConfigurationLoading" time="0.113" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testPersistance" time="0.775" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testRunLocally" time="0.827" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testRunLocallyOnTwoCpu" time="0.289" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testRunLocallyWithPreset" time="0.653" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testRunOnCluster" time="3.64" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="testRunOnClusterAsync" time="5.018" classname="compbio.runner.conservation.AAConTester"/>
+  <testcase name="readStatistics" time="0.0" classname="compbio.runner.disorder.DisemblTester"/>
+  <testcase name="testConfigurationLoading" time="0.044" classname="compbio.runner.disorder.DisemblTester"/>
+  <testcase name="testPersistance" time="1.297" classname="compbio.runner.disorder.DisemblTester"/>
+  <testcase name="testRunLocally" time="0.579" classname="compbio.runner.disorder.DisemblTester"/>
+  <testcase name="testRunOnCluster" time="2.047" classname="compbio.runner.disorder.DisemblTester"/>
+  <testcase name="testRunOnClusterAsync" time="6.011" classname="compbio.runner.disorder.DisemblTester"/>
+  <testcase name="readStatistics" time="0.0" classname="compbio.runner.disorder.GlobPlotTester"/>
+  <testcase name="testConfigurationLoading" time="0.043" classname="compbio.runner.disorder.GlobPlotTester"/>
+  <testcase name="testPersistance" time="0.98" classname="compbio.runner.disorder.GlobPlotTester"/>
+  <testcase name="testRunLocally" time="0.454" classname="compbio.runner.disorder.GlobPlotTester"/>
+  <testcase name="testRunOnCluster" time="2.503" classname="compbio.runner.disorder.GlobPlotTester"/>
+  <testcase name="testRunOnClusterAsync" time="6.021" classname="compbio.runner.disorder.GlobPlotTester"/>
+  <testcase name="testConfigurationLoading" time="0.069" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testPersistance" time="0.308" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testReadResults" time="0.025" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testRunLocally" time="0.196" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testRunLocallyWithParams" time="0.071" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testRunOnCluster" time="3.308" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testRunOnClusterAsync" time="6.025" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="testSetParameter" time="0.0" classname="compbio.runner.disorder.IUPredTester"/>
+  <testcase name="readStatistics" time="18.639" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testConfigurationLoading" time="0.045" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testPersistance" time="18.613" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testRunLocally" time="18.541" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testRunLocallyOnTwoCpu" time="7.131" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testRunOnCluster" time="13.058" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testRunOnClusterAsync" time="11.022" classname="compbio.runner.disorder.JronnTester"/>
+  <testcase name="testRunWithMatrix" time="0.13" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="testConfigurationLoading" time="0.046" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="testRunLocally" time="0.132" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="readStatisticsClusterExecution" time="1.64" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="testRunOnCluster" time="5.003" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="readStatistics" time="0.518" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="testOptionsLocally" time="0.429" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="testPersistance" time="0.303" classname="compbio.runner.msa.ClustalWTester"/>
+  <testcase name="testLimitExceeded" time="0.014" classname="compbio.runner.msa.LimitTester"/>
   <testcase name="testLoadLimits" time="0.0" classname="compbio.runner.msa.LimitTester"/>
-  <testcase name="testArguments" time="6.103" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testConstrainedParametersMaxValues" time="3.235" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testConstrainedParametersMinValues" time="1.326" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testConstrainedParametersRandomValues" time="7.672" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testDefaultParameters" time="20.463" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testOptions" time="4.449" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testParameters" time="2.422" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="testPresets" time="2.136" classname="compbio.runner.msa.MafftParametersTester"/>
-  <testcase name="readStatistics" time="0.639" classname="compbio.runner.msa.MafftTester"/>
-  <testcase name="testClusterExecute" time="11.34" classname="compbio.runner.msa.MafftTester"/>
-  <testcase name="testConfigurationLoading" time="0.435" classname="compbio.runner.msa.MafftTester"/>
-  <testcase name="testExecute" time="0.428" classname="compbio.runner.msa.MafftTester"/>
-  <testcase name="testPersistance" time="1.033" classname="compbio.runner.msa.MafftTester"/>
-  <testcase name="testRunOnClusterAsyncCheckStatusLongPoolingTime" time="21.418" classname="compbio.runner.msa.MafftTester"/>
+  <testcase name="testArguments" time="3.027" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testConstrainedParametersMaxValues" time="1.461" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testConstrainedParametersMinValues" time="0.886" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testConstrainedParametersRandomValues" time="3.53" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testDefaultParameters" time="4.507" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testOptions" time="0.971" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testParameters" time="1.179" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="testPresets" time="0.965" classname="compbio.runner.msa.MafftParametersTester"/>
+  <testcase name="readStatistics" time="0.516" classname="compbio.runner.msa.MafftTester"/>
+  <testcase name="testClusterExecute" time="1.264" classname="compbio.runner.msa.MafftTester"/>
+  <testcase name="testConfigurationLoading" time="0.062" classname="compbio.runner.msa.MafftTester"/>
+  <testcase name="testExecute" time="0.162" classname="compbio.runner.msa.MafftTester"/>
+  <testcase name="testPersistance" time="0.305" classname="compbio.runner.msa.MafftTester"/>
+  <testcase name="testRunOnClusterAsyncCheckStatusLongPoolingTime" time="5.535" classname="compbio.runner.msa.MafftTester"/>
   <testcase name="testSetInputTester" time="0.0" classname="compbio.runner.msa.MafftTester"/>
-  <testcase name="testArguments" time="7.798" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testConstrainedParametersMaxValues" time="1.534" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testConstrainedParametersMinValues" time="0.845" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testConstrainedParametersRandomValues" time="7.603" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testDefaultParameters" time="0.622" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testOptions" time="2.481" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testParameters" time="4.773" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="testPresets" time="0.856" classname="compbio.runner.msa.MuscleParametersTester"/>
-  <testcase name="readStatistics" time="0.932" classname="compbio.runner.msa.MuscleTester"/>
-  <testcase name="testConfigurationLoading" time="0.313" classname="compbio.runner.msa.MuscleTester"/>
-  <testcase name="testPersistance" time="0.241" classname="compbio.runner.msa.MuscleTester"/>
-  <testcase name="testRunLocally" time="0.101" classname="compbio.runner.msa.MuscleTester"/>
-  <testcase name="testRunOnCluster" time="8.142" classname="compbio.runner.msa.MuscleTester"/>
-  <testcase name="testArguments" time="2.874" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="testConstrainedParametersMaxValues" time="38.416" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="testArguments" time="4.387" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testConfiguration" time="0.0010" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testConstrainedParametersMaxValues" time="1.977" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testConstrainedParametersMinValues" time="1.112" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testConstrainedParametersRandomValues" time="2.749" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testDefaultParameters" time="0.1" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testOptions" time="1.36" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testParameters" time="1.919" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="testPresets" time="0.242" classname="compbio.runner.msa.MuscleParametersTester"/>
+  <testcase name="readStatistics" time="0.52" classname="compbio.runner.msa.MuscleTester"/>
+  <testcase name="testConfigurationLoading" time="0.043" classname="compbio.runner.msa.MuscleTester"/>
+  <testcase name="testPersistance" time="0.233" classname="compbio.runner.msa.MuscleTester"/>
+  <testcase name="testRunLocally" time="0.1" classname="compbio.runner.msa.MuscleTester"/>
+  <testcase name="testRunOnCluster" time="3.867" classname="compbio.runner.msa.MuscleTester"/>
+  <testcase name="testArguments" time="1.819" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="testConstrainedParametersMaxValues" time="37.102" classname="compbio.runner.msa.ProbconsParametersTester"/>
   <testcase name="testConstrainedParametersMinValues" time="0.768" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="testConstrainedParametersRandomValues" time="61.881" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="testDefaultParameters" time="14.704" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="testOptions" time="0.433" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="testParameters" time="1.321" classname="compbio.runner.msa.ProbconsParametersTester"/>
-  <testcase name="readStatistics" time="0.441" classname="compbio.runner.msa.ProbconsTester"/>
-  <testcase name="testClusterExecute" time="19.326" classname="compbio.runner.msa.ProbconsTester"/>
-  <testcase name="testConfigurationLoading" time="0.107" classname="compbio.runner.msa.ProbconsTester"/>
-  <testcase name="testExecute" time="0.436" classname="compbio.runner.msa.ProbconsTester"/>
-  <testcase name="testPersistance" time="0.509" classname="compbio.runner.msa.ProbconsTester"/>
+  <testcase name="testConstrainedParametersRandomValues" time="70.319" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="testDefaultParameters" time="4.845" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="testOptions" time="0.443" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="testParameters" time="1.344" classname="compbio.runner.msa.ProbconsParametersTester"/>
+  <testcase name="readStatistics" time="0.455" classname="compbio.runner.msa.ProbconsTester"/>
+  <testcase name="testClusterExecute" time="2.71" classname="compbio.runner.msa.ProbconsTester"/>
+  <testcase name="testConfigurationLoading" time="0.089" classname="compbio.runner.msa.ProbconsTester"/>
+  <testcase name="testExecute" time="0.455" classname="compbio.runner.msa.ProbconsTester"/>
+  <testcase name="testPersistance" time="0.527" classname="compbio.runner.msa.ProbconsTester"/>
   <testcase name="testSetInputTester" time="0.0" classname="compbio.runner.msa.ProbconsTester"/>
-  <testcase name="testArguments" time="8.765" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testArguments" time="4.098" classname="compbio.runner.msa.TcoffeeParametersTester"/>
   <testcase name="testConfiguration" time="0.0" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testConstrainedParametersMaxValues" time="11.166" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testConstrainedParametersMinValues" time="5.507" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testConstrainedParametersRandomValues" time="21.942" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testDefaultParameters" time="10.988" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testOptions" time="0.891" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testParameters" time="12.717" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="testPresets" time="1.094" classname="compbio.runner.msa.TcoffeeParametersTester"/>
-  <testcase name="readStatistics" time="0.876" classname="compbio.runner.msa.TcoffeeTester"/>
-  <testcase name="testClusterExecute" time="5.526" classname="compbio.runner.msa.TcoffeeTester"/>
-  <testcase name="testConfigurationLoading" time="0.099" classname="compbio.runner.msa.TcoffeeTester"/>
-  <testcase name="testExecute" time="0.868" classname="compbio.runner.msa.TcoffeeTester"/>
-  <testcase name="testNcore" time="0.0010" classname="compbio.runner.msa.TcoffeeTester"/>
-  <testcase name="testPersistance" time="1.771" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testConstrainedParametersMaxValues" time="4.319" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testConstrainedParametersMinValues" time="2.887" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testConstrainedParametersRandomValues" time="8.762" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testDefaultParameters" time="3.85" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testOptions" time="0.377" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testParameters" time="3.8" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="testPresets" time="0.214" classname="compbio.runner.msa.TcoffeeParametersTester"/>
+  <testcase name="readStatistics" time="0.516" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testClusterExecute" time="5.084" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testConfigurationLoading" time="0.039" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testExecute" time="0.364" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testNcore" time="0.0" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testPersistance" time="0.769" classname="compbio.runner.msa.TcoffeeTester"/>
+  <testcase name="testCollectStat" time="0.271" classname="compbio.stat.collector.ExecutionStatCollectorTester"/>
+  <testcase name="testHasCompleted" time="0.0010" classname="compbio.stat.collector.ExecutionStatCollectorTester"/>
+  <testcase name="testUpdateStatTester" time="35.012" classname="compbio.stat.collector.ExecutionStatCollectorTester"/>
+  <testcase name="testVerifyJobsCount" time="0.412" classname="compbio.stat.collector.StatDBTester"/>
+  <testcase name="testGetStats" time="0.022" classname="compbio.stat.servlet.util.StatCollectionTester"/>
 </testsuite>