X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ftests%2FAnt%20suite%2Fclasses.html;fp=website%2Ftests%2FAnt%20suite%2Fclasses.html;h=34aa37e7d8861c255691e23ce92fbcaa2761da9e;hb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;hp=0000000000000000000000000000000000000000;hpb=bd60ae4b55ef69f0862761741ec89baeb05e5fc2;p=jabaws.git diff --git a/website/tests/Ant suite/classes.html b/website/tests/Ant suite/classes.html new file mode 100644 index 0000000..34aa37e --- /dev/null +++ b/website/tests/Ant suite/classes.html @@ -0,0 +1,1550 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Class nameMethod nameGroups
compbio.engine.client.CommandBuilderTester  
@Test
 testOptionsToCommand 
 testSpaceDelimiterExecutable 
 testCommandBuilding 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.metadata.RunnerConfigTester  
@Test
 testValidateUpperBoundaryConstrainCheck 
 testOptionSetInvalidValue 
 testValidateBoundaryConstrainCheck 
 testValidateValueConstrain 
 testCreateParameterWithValidValueConstrain 
 testValidateLowerBoundaryConstrainCheck 
 testOptionNoDefaultValidate 
 testCreateParameter 
 testOptionToCommand 
 testParameterToCommand 
 testCreateNumParameterWithoutValidValue 
 testValidate 
@BeforeClass
@BeforeMethod
 setup 
@AfterMethod
@AfterClass
compbio.runner._impl.NetNglycTester  
@Test
 testGetTestCommand 
 testBuildCommandcluster runner
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner.msa.MafftParametersTester  
@Test
 testConstrainedParametersMaxValuesrunner non_windows
 testConstrainedParametersRandomValuesrunner non_windows
 testConstrainedParametersMinValuesrunner non_windows
 testArgumentsrunner non_windows
 testOptionsrunner non_windows
 testDefaultParametersrunner non_windows
 testParametersrunner non_windows
 testPresetsrunner non_windows
 testConfiguration 
@BeforeClass
@BeforeMethod
 setuprunner non_windows
@AfterMethod
@AfterClass
compbio.engine.EngineConfiguratorTester  
@Test
 testGetAsyncEngine 
 testGetSyncEngine 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner._impl.RonnTester  
@Test
 testGetTestCommand 
 testBuildCommandcluster runner
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner.msa.ProbconsTester  
@Test
 testExecuterunner non_windows
 testPersistancerunner non_windows
 testClusterExecutecluster runner non_windows
 testSetInputTesterrunner non_windows
 testConfigurationLoadingrunner
 readStatisticsrunner non_windows
@BeforeClass
@BeforeMethod
 initcluster runner non_windows
@AfterMethod
@AfterClass
compbio.engine.conf.PropertyHelperManagerTester  
@Test
 testClusterEngineConfcluster
 validateClustalConfiguration 
 validateTcoffeeConfiguration 
 validateMuscleConfiguration 
 validateMafftConfiguration 
@BeforeClass
 testLoadResources 
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.FilePullerTester  
@Test
 testGet 
 testCacheengine
 testGetDelayengine
 testPullengine
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.metadata.OptionCombinatorTester  
@Test
 testgetAllParameters 
 testgetAllOptions 
@BeforeClass
@BeforeMethod
 setup 
@AfterMethod
@AfterClass
compbio.runner.msa.MuscleTester  
@Test
 testRunOnClustercluster runner
 testRunOnClusterAsynccluster runner
 testPersistancerunner
 testConfigurationLoadingrunner
 readStatisticsrunner
 testRunLocallyrunner
@BeforeClass
@BeforeMethod
 init 
@AfterMethod
@AfterClass
compbio.runner.msa.TcoffeeTester  
@Test
 testExecuterunner non_windows
 testPersistancecluster runner non_windows
 testNcorerunner non_windows
 testClusterExecutecluster runner non_windows
 testConfigurationLoadingrunner
 readStatisticsrunner non_windows
@BeforeClass
@BeforeMethod
 initcluster runner non_windows
@AfterMethod
@AfterClass
compbio.runner.msa.LimitTester  
@Test
 testLoadLimits 
@BeforeClass
@BeforeMethod
 setuprunner
@AfterMethod
@AfterClass
compbio.runner._impl.OBTester  
@Test
 testGetTestCommand 
 testBuildCommandcluster runner
 testGetTestArgsCommand 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.local.AsyncLocalRunnerTester  
@Test
 testCancelLocallyengine
 testMultipleCancelLocallyengine
 testAsyncCancelOperationengine
 testAsyncRetrievOperationengine
 testSubmitLocallyengine
 testCancelCompletedTaskLocallyengine
 testGetStatusengine
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.local.LocalRunnerTester  
@Test
 testCancelLocallyengine
 testMultipleCancelLocallyengine
 testCancelCompletedTaskLocallyengine
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner._impl.Tmhmm2Tester  
@Test
 testGetTestCommand 
 testBuildCommandcluster runner
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner.msa.MafftTester  
@Test
 testExecuterunner non_windows
 testRunOnClusterAsyncCheckStatusShortPoolingTimecluster runner non_windows
 testPersistancerunner non_windows
 testClusterExecutecluster runner non_windows
 testSetInputTesterrunner non_windows
 testConfigurationLoadingrunner
 readStatisticsrunner non_windows
 testRunOnClusterAsyncCheckStatusLongPoolingTimecluster runner non_windows
@BeforeClass
@BeforeMethod
 initcluster runner non_windows
@AfterMethod
@AfterClass
compbio.data.sequence.ClustalAlignmentUtilTester  
@Test
 testReadClustalFile 
 testReadClustalFileLongNames 
 testReadClustalFileShortNames 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner.msa.MuscleParametersTester  
@Test
 testConstrainedParametersMaxValuesrunner
 testConstrainedParametersRandomValuesrunner
 testConstrainedParametersMinValuesrunner
 testArgumentsrunner
 testOptionsrunner
 testDefaultParametersrunner
 testParametersrunner
 testPresetsrunner
 testConfiguration 
@BeforeClass
@BeforeMethod
 setuprunner
@AfterMethod
@AfterClass
compbio.data.sequence.FastaSequenceGeneratorTester  
@Test
 testProteinSequenceGeneration 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.cluster.drmaa.ClusterSessionTester  
@Test
 testTaskListengine cluster
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.data.sequence.FastaSequenceTester  
@Test
 testGetFormattedFasta 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.client.PathValidatorTester  
@Test
 testIsAbsolutePath 
 testGetClassPath 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.data.sequence.SequenceUtilTester  
@Test
 testDeepCleanSequence 
 testReadWriteFasta 
 testisNonAmbNucleotideSequence 
 testisProteinSequence 
 testCleanSequence 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner.msa.TcoffeeParametersTester  
@Test
 testConstrainedParametersMaxValuesrunner non_windows
 testConstrainedParametersRandomValuesrunner non_windows
 testConstrainedParametersMinValuesrunner non_windows
 testArgumentsrunner non_windows
 testOptionsrunner non_windows
 testDefaultParametersrunner non_windows
 testParametersrunner non_windows
 testPresetsrunner non_windows
 testConfiguration 
@BeforeClass
@BeforeMethod
 setuprunner non_windows
@AfterMethod
@AfterClass
compbio.runner.msa.ClustalWTester  
@Test
 testRunOnClustercluster runner
 testPersistancerunner
 testAddParameters 
 testOptionsLocallyrunner
 readStatisticsClusterExecutioncluster runner
 testConfigurationLoadingrunner
 testRunWithMatrixrunner
 readStatisticsrunner
 testRunLocallyrunner
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.cluster.drmaa.UtilTester  
@Test
 testParser 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.conf.DirectoryManagerTester  
@Test
 testGetDirectory 
 testNanoTime 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.cluster.drmaa.DrmaaClusterEngineTester  
@Test
 testSubmitengine cluster
 testCancelengine cluster
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester  
@Test
 testSubmitengine cluster
 testCancelengine cluster
 testGetJobStatusengine cluster
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.metadata.PresetTester  
@Test
 marshallPreset 
 validatePresets 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.metadata.OptionMarshallerTester  
@Test
 testUnMarshalling 
 testMarshalling 
@BeforeClass
@BeforeMethod
 setup 
@AfterMethod
@AfterClass
compbio.runner.msa.ClustalWParametersTester  
@Test
 testConstrainedParametersMaxValuesrunner
 testConstrainedParametersRandomValuesrunner
 testConstrainedParametersMinValuesrunner
 testArgumentsrunner
 testOptionsrunner
 testDefaultParametersrunner
 testParametersrunner
 testPresetsrunner
 testConfiguration 
@BeforeClass
@BeforeMethod
 setuprunner
@AfterMethod
@AfterClass
compbio.runner._impl.RPSBlastTester  
@Test
 testGetTestCommand 
 testBuildCommandcluster runner
 testGetTestArgsCommand 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.PulledFileCacheTester  
@Test
 test 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner._impl.MclTester  
@Test
 testGetTestCommand 
 testBuildCommandcluster runner
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.engine.cluster.dundee._QueueTester  
@Test
 testQueue 
@BeforeClass
@BeforeMethod
@AfterMethod
@AfterClass
compbio.runner.msa.ProbconsParametersTester  
@Test
 testConstrainedParametersMaxValuesrunner non_windows
 testConstrainedParametersRandomValuesrunner non_windows
 testConstrainedParametersMinValuesrunner non_windows
 testArgumentsrunner non_windows
 testOptionsrunner non_windows
 testDefaultParametersrunner non_windows
 testParametersrunner non_windows
 testConfiguration 
@BeforeClass
@BeforeMethod
 setuprunner non_windows
@AfterMethod
@AfterClass
compbio.engine.conf.RunnerConfigMarshallerTester  
@Test
 testValidationOnMarshalling 
 testUnMarshalling 
 testValidation 
 testSchemaFromCodeGeneration 
 testMarshalling 
@BeforeClass
@BeforeMethod
 setup 
@AfterMethod
@AfterClass