X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ftests%2FAnt%20suite%2Fclasses.html;fp=website%2Ftests%2FAnt%20suite%2Fclasses.html;h=34aa37e7d8861c255691e23ce92fbcaa2761da9e;hb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;hp=0000000000000000000000000000000000000000;hpb=bd60ae4b55ef69f0862761741ec89baeb05e5fc2;p=jabaws.git diff --git a/website/tests/Ant suite/classes.html b/website/tests/Ant suite/classes.html new file mode 100644 index 0000000..34aa37e --- /dev/null +++ b/website/tests/Ant suite/classes.html @@ -0,0 +1,1550 @@ +
Class name | +Method name | +Groups | +
---|---|---|
compbio.engine.client.CommandBuilderTester | +||
@Test | +||
+ | testOptionsToCommand | +|
+ | testSpaceDelimiterExecutable | +|
+ | testCommandBuilding | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.metadata.RunnerConfigTester | +||
@Test | +||
+ | testValidateUpperBoundaryConstrainCheck | +|
+ | testOptionSetInvalidValue | +|
+ | testValidateBoundaryConstrainCheck | +|
+ | testValidateValueConstrain | +|
+ | testCreateParameterWithValidValueConstrain | +|
+ | testValidateLowerBoundaryConstrainCheck | +|
+ | testOptionNoDefaultValidate | +|
+ | testCreateParameter | +|
+ | testOptionToCommand | +|
+ | testParameterToCommand | +|
+ | testCreateNumParameterWithoutValidValue | +|
+ | testValidate | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +|
@AfterMethod | +||
@AfterClass | +||
compbio.runner._impl.NetNglycTester | +||
@Test | +||
+ | testGetTestCommand | +|
+ | testBuildCommand | +cluster runner | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.MafftParametersTester | +||
@Test | +||
+ | testConstrainedParametersMaxValues | +runner non_windows | +
+ | testConstrainedParametersRandomValues | +runner non_windows | +
+ | testConstrainedParametersMinValues | +runner non_windows | +
+ | testArguments | +runner non_windows | +
+ | testOptions | +runner non_windows | +
+ | testDefaultParameters | +runner non_windows | +
+ | testParameters | +runner non_windows | +
+ | testPresets | +runner non_windows | +
+ | testConfiguration | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +runner non_windows | +
@AfterMethod | +||
@AfterClass | +||
compbio.engine.EngineConfiguratorTester | +||
@Test | +||
+ | testGetAsyncEngine | +|
+ | testGetSyncEngine | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner._impl.RonnTester | +||
@Test | +||
+ | testGetTestCommand | +|
+ | testBuildCommand | +cluster runner | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.ProbconsTester | +||
@Test | +||
+ | testExecute | +runner non_windows | +
+ | testPersistance | +runner non_windows | +
+ | testClusterExecute | +cluster runner non_windows | +
+ | testSetInputTester | +runner non_windows | +
+ | testConfigurationLoading | +runner | +
+ | readStatistics | +runner non_windows | +
@BeforeClass | +||
@BeforeMethod | +||
+ | init | +cluster runner non_windows | +
@AfterMethod | +||
@AfterClass | +||
compbio.engine.conf.PropertyHelperManagerTester | +||
@Test | +||
+ | testClusterEngineConf | +cluster | +
+ | validateClustalConfiguration | +|
+ | validateTcoffeeConfiguration | +|
+ | validateMuscleConfiguration | +|
+ | validateMafftConfiguration | +|
@BeforeClass | +||
+ | testLoadResources | +|
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.FilePullerTester | +||
@Test | +||
+ | testGet | +|
+ | testCache | +engine | +
+ | testGetDelay | +engine | +
+ | testPull | +engine | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.metadata.OptionCombinatorTester | +||
@Test | +||
+ | testgetAllParameters | +|
+ | testgetAllOptions | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +|
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.MuscleTester | +||
@Test | +||
+ | testRunOnCluster | +cluster runner | +
+ | testRunOnClusterAsync | +cluster runner | +
+ | testPersistance | +runner | +
+ | testConfigurationLoading | +runner | +
+ | readStatistics | +runner | +
+ | testRunLocally | +runner | +
@BeforeClass | +||
@BeforeMethod | +||
+ | init | +|
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.TcoffeeTester | +||
@Test | +||
+ | testExecute | +runner non_windows | +
+ | testPersistance | +cluster runner non_windows | +
+ | testNcore | +runner non_windows | +
+ | testClusterExecute | +cluster runner non_windows | +
+ | testConfigurationLoading | +runner | +
+ | readStatistics | +runner non_windows | +
@BeforeClass | +||
@BeforeMethod | +||
+ | init | +cluster runner non_windows | +
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.LimitTester | +||
@Test | +||
+ | testLoadLimits | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +runner | +
@AfterMethod | +||
@AfterClass | +||
compbio.runner._impl.OBTester | +||
@Test | +||
+ | testGetTestCommand | +|
+ | testBuildCommand | +cluster runner | +
+ | testGetTestArgsCommand | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.local.AsyncLocalRunnerTester | +||
@Test | +||
+ | testCancelLocally | +engine | +
+ | testMultipleCancelLocally | +engine | +
+ | testAsyncCancelOperation | +engine | +
+ | testAsyncRetrievOperation | +engine | +
+ | testSubmitLocally | +engine | +
+ | testCancelCompletedTaskLocally | +engine | +
+ | testGetStatus | +engine | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.local.LocalRunnerTester | +||
@Test | +||
+ | testCancelLocally | +engine | +
+ | testMultipleCancelLocally | +engine | +
+ | testCancelCompletedTaskLocally | +engine | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner._impl.Tmhmm2Tester | +||
@Test | +||
+ | testGetTestCommand | +|
+ | testBuildCommand | +cluster runner | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.MafftTester | +||
@Test | +||
+ | testExecute | +runner non_windows | +
+ | testRunOnClusterAsyncCheckStatusShortPoolingTime | +cluster runner non_windows | +
+ | testPersistance | +runner non_windows | +
+ | testClusterExecute | +cluster runner non_windows | +
+ | testSetInputTester | +runner non_windows | +
+ | testConfigurationLoading | +runner | +
+ | readStatistics | +runner non_windows | +
+ | testRunOnClusterAsyncCheckStatusLongPoolingTime | +cluster runner non_windows | +
@BeforeClass | +||
@BeforeMethod | +||
+ | init | +cluster runner non_windows | +
@AfterMethod | +||
@AfterClass | +||
compbio.data.sequence.ClustalAlignmentUtilTester | +||
@Test | +||
+ | testReadClustalFile | +|
+ | testReadClustalFileLongNames | +|
+ | testReadClustalFileShortNames | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.MuscleParametersTester | +||
@Test | +||
+ | testConstrainedParametersMaxValues | +runner | +
+ | testConstrainedParametersRandomValues | +runner | +
+ | testConstrainedParametersMinValues | +runner | +
+ | testArguments | +runner | +
+ | testOptions | +runner | +
+ | testDefaultParameters | +runner | +
+ | testParameters | +runner | +
+ | testPresets | +runner | +
+ | testConfiguration | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +runner | +
@AfterMethod | +||
@AfterClass | +||
compbio.data.sequence.FastaSequenceGeneratorTester | +||
@Test | +||
+ | testProteinSequenceGeneration | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.cluster.drmaa.ClusterSessionTester | +||
@Test | +||
+ | testTaskList | +engine cluster | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.data.sequence.FastaSequenceTester | +||
@Test | +||
+ | testGetFormattedFasta | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.client.PathValidatorTester | +||
@Test | +||
+ | testIsAbsolutePath | +|
+ | testGetClassPath | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.data.sequence.SequenceUtilTester | +||
@Test | +||
+ | testDeepCleanSequence | +|
+ | testReadWriteFasta | +|
+ | testisNonAmbNucleotideSequence | +|
+ | testisProteinSequence | +|
+ | testCleanSequence | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.TcoffeeParametersTester | +||
@Test | +||
+ | testConstrainedParametersMaxValues | +runner non_windows | +
+ | testConstrainedParametersRandomValues | +runner non_windows | +
+ | testConstrainedParametersMinValues | +runner non_windows | +
+ | testArguments | +runner non_windows | +
+ | testOptions | +runner non_windows | +
+ | testDefaultParameters | +runner non_windows | +
+ | testParameters | +runner non_windows | +
+ | testPresets | +runner non_windows | +
+ | testConfiguration | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +runner non_windows | +
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.ClustalWTester | +||
@Test | +||
+ | testRunOnCluster | +cluster runner | +
+ | testPersistance | +runner | +
+ | testAddParameters | +|
+ | testOptionsLocally | +runner | +
+ | readStatisticsClusterExecution | +cluster runner | +
+ | testConfigurationLoading | +runner | +
+ | testRunWithMatrix | +runner | +
+ | readStatistics | +runner | +
+ | testRunLocally | +runner | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.cluster.drmaa.UtilTester | +||
@Test | +||
+ | testParser | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.conf.DirectoryManagerTester | +||
@Test | +||
+ | testGetDirectory | +|
+ | testNanoTime | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.cluster.drmaa.DrmaaClusterEngineTester | +||
@Test | +||
+ | testSubmit | +engine cluster | +
+ | testCancel | +engine cluster | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester | +||
@Test | +||
+ | testSubmit | +engine cluster | +
+ | testCancel | +engine cluster | +
+ | testGetJobStatus | +engine cluster | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.metadata.PresetTester | +||
@Test | +||
+ | marshallPreset | +|
+ | validatePresets | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.metadata.OptionMarshallerTester | +||
@Test | +||
+ | testUnMarshalling | +|
+ | testMarshalling | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +|
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.ClustalWParametersTester | +||
@Test | +||
+ | testConstrainedParametersMaxValues | +runner | +
+ | testConstrainedParametersRandomValues | +runner | +
+ | testConstrainedParametersMinValues | +runner | +
+ | testArguments | +runner | +
+ | testOptions | +runner | +
+ | testDefaultParameters | +runner | +
+ | testParameters | +runner | +
+ | testPresets | +runner | +
+ | testConfiguration | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +runner | +
@AfterMethod | +||
@AfterClass | +||
compbio.runner._impl.RPSBlastTester | +||
@Test | +||
+ | testGetTestCommand | +|
+ | testBuildCommand | +cluster runner | +
+ | testGetTestArgsCommand | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.PulledFileCacheTester | +||
@Test | +||
+ | test | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner._impl.MclTester | +||
@Test | +||
+ | testGetTestCommand | +|
+ | testBuildCommand | +cluster runner | +
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.engine.cluster.dundee._QueueTester | +||
@Test | +||
+ | testQueue | +|
@BeforeClass | +||
@BeforeMethod | +||
@AfterMethod | +||
@AfterClass | +||
compbio.runner.msa.ProbconsParametersTester | +||
@Test | +||
+ | testConstrainedParametersMaxValues | +runner non_windows | +
+ | testConstrainedParametersRandomValues | +runner non_windows | +
+ | testConstrainedParametersMinValues | +runner non_windows | +
+ | testArguments | +runner non_windows | +
+ | testOptions | +runner non_windows | +
+ | testDefaultParameters | +runner non_windows | +
+ | testParameters | +runner non_windows | +
+ | testConfiguration | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +runner non_windows | +
@AfterMethod | +||
@AfterClass | +||
compbio.engine.conf.RunnerConfigMarshallerTester | +||
@Test | +||
+ | testValidationOnMarshalling | +|
+ | testUnMarshalling | +|
+ | testValidation | +|
+ | testSchemaFromCodeGeneration | +|
+ | testMarshalling | +|
@BeforeClass | +||
@BeforeMethod | +||
+ | setup | +|
@AfterMethod | +||
@AfterClass | +