X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ftests%2FAnt%20suite%2Fclasses.html;h=2ff180842671cd38dab7f87a94f9404c4596c83f;hb=f1bdd8da517901fe1d7957d388ea579ad1fbaa3b;hp=34aa37e7d8861c255691e23ce92fbcaa2761da9e;hpb=cb02e8a08893701386c270a8bf9d0f08b9cbc4db;p=jabaws.git
diff --git a/website/tests/Ant suite/classes.html b/website/tests/Ant suite/classes.html
index 34aa37e..2ff1808 100644
--- a/website/tests/Ant suite/classes.html
+++ b/website/tests/Ant suite/classes.html
@@ -34,58 +34,19 @@
@AfterClass |
-compbio.metadata.RunnerConfigTester |
+compbio.runner._impl.NetNglycTester |
| |
@Test |
|
-testValidateUpperBoundaryConstrainCheck |
- |
-
- |
-testOptionSetInvalidValue |
- |
-
- |
-testValidateBoundaryConstrainCheck |
- |
-
- |
-testValidateValueConstrain |
- |
-
- |
-testCreateParameterWithValidValueConstrain |
- |
-
- |
-testValidateLowerBoundaryConstrainCheck |
- |
-
- |
-testOptionNoDefaultValidate |
- |
-
- |
-testCreateParameter |
- |
-
- |
-testOptionToCommand |
- |
-
- |
-testParameterToCommand |
- |
-
- |
-testCreateNumParameterWithoutValidValue |
- |
+testBuildCommand |
+cluster runner |
+
|
-testValidate |
+testGetTestCommand |
|
@BeforeClass |
@@ -94,30 +55,25 @@
@BeforeMethod |
- |
-setup |
- |
-
@AfterMethod |
@AfterClass |
-compbio.runner._impl.NetNglycTester |
+compbio.engine.EngineConfiguratorTester |
| |
@Test |
|
-testGetTestCommand |
+testGetAsyncEngine |
|
|
-testBuildCommand |
-cluster runner |
-
+testGetSyncEngine |
+ |
@BeforeClass |
@@ -131,56 +87,42 @@
@AfterClass |
-compbio.runner.msa.MafftParametersTester |
+compbio.runner.disorder.GlobPlotTester |
| |
@Test |
|
-testConstrainedParametersMaxValues |
-runner non_windows |
-
-
- |
-testConstrainedParametersRandomValues |
-runner non_windows |
-
-
- |
-testConstrainedParametersMinValues |
-runner non_windows |
+testRunOnCluster |
+cluster runner |
|
-testArguments |
-runner non_windows |
+testPersistance |
+runner |
|
-testOptions |
-runner non_windows |
+testRunOnClusterAsync |
+cluster runner |
|
-testDefaultParameters |
-runner non_windows |
+testConfigurationLoading |
+runner |
|
-testParameters |
-runner non_windows |
+readStatistics |
+runner |
|
-testPresets |
-runner non_windows |
+testRunLocally |
+runner |
- |
-testConfiguration |
- |
-
@BeforeClass |
@@ -188,9 +130,8 @@
|
-setup |
-runner non_windows |
-
+init |
+ |
@AfterMethod |
@@ -198,18 +139,26 @@
@AfterClass |
-compbio.engine.EngineConfiguratorTester |
+compbio.stat.collector.ExecutionStatCollectorTester |
| |
@Test |
|
-testGetAsyncEngine |
+testHasCompleted |
|
|
-testGetSyncEngine |
+testHasTimedOut |
+ |
+
+ |
+testCollectStat |
+ |
+
+ |
+testUpdateStatTester |
|
@BeforeClass |
@@ -224,19 +173,45 @@
@AfterClass |
-compbio.runner._impl.RonnTester |
+compbio.engine.local.AsyncLocalRunnerTester |
| |
@Test |
|
-testGetTestCommand |
- |
+testCancelLocally |
+engine |
+
|
-testBuildCommand |
-cluster runner |
+testMultipleCancelLocally |
+engine |
+
+
+ |
+testAsyncCancelOperation |
+engine |
+
+
+ |
+testAsyncRetrievOperation |
+engine |
+
+
+ |
+testSubmitLocally |
+engine |
+
+
+ |
+testCancelCompletedTaskLocally |
+engine |
+
+
+ |
+testGetStatus |
+engine |
@BeforeClass |
@@ -251,7 +226,7 @@
@AfterClass |
-compbio.runner.msa.ProbconsTester |
+compbio.runner.msa.MafftTester |
| |
@Test |
@@ -263,6 +238,11 @@
|
+testRunOnClusterAsyncCheckStatusShortPoolingTime |
+cluster runner non_windows |
+
+
+ |
testPersistance |
runner non_windows |
@@ -287,6 +267,11 @@
runner non_windows |
+ |
+testRunOnClusterAsyncCheckStatusLongPoolingTime |
+cluster runner non_windows |
+
+
@BeforeClass |
@@ -304,40 +289,27 @@
@AfterClass |
-compbio.engine.conf.PropertyHelperManagerTester |
+compbio.data.sequence.ClustalAlignmentUtilTester |
| |
@Test |
|
-testClusterEngineConf |
-cluster |
-
-
- |
-validateClustalConfiguration |
- |
-
- |
-validateTcoffeeConfiguration |
+testReadClustalFile |
|
|
-validateMuscleConfiguration |
+testReadClustalFileLongNames |
|
|
-validateMafftConfiguration |
+testReadClustalFileShortNames |
|
@BeforeClass |
- |
-testLoadResources |
- |
-
@BeforeMethod |
@@ -347,29 +319,50 @@
@AfterClass |
-compbio.engine.FilePullerTester |
+compbio.runner.disorder.IUPredTester |
| |
@Test |
|
-testGet |
- |
+testRunOnCluster |
+cluster runner |
+
|
-testCache |
-engine |
+testReadResults |
+runner |
|
-testGetDelay |
-engine |
+testPersistance |
+runner |
|
-testPull |
-engine |
+testRunOnClusterAsync |
+cluster runner |
+
+
+ |
+testSetParameter |
+runner |
+
+
+ |
+testConfigurationLoading |
+runner |
+
+
+ |
+testRunLocally |
+runner |
+
+
+ |
+testRunLocallyWithParams |
+runner |
@BeforeClass |
@@ -378,24 +371,28 @@
@BeforeMethod |
+ |
+init |
+ |
+
@AfterMethod |
@AfterClass |
-compbio.metadata.OptionCombinatorTester |
+compbio.engine.client.PathValidatorTester |
| |
@Test |
|
-testgetAllParameters |
+testIsAbsolutePath |
|
|
-testgetAllOptions |
+testGetClassPath |
|
@BeforeClass |
@@ -404,61 +401,98 @@
@BeforeMethod |
- |
-setup |
- |
-
@AfterMethod |
@AfterClass |
-compbio.runner.msa.MuscleTester |
+compbio.stat.collector.StatDBTester |
| |
@Test |
|
-testRunOnCluster |
-cluster runner |
-
+testReadOneMonthData |
+ |
|
-testRunOnClusterAsync |
-cluster runner |
-
+testVerifyJobsCount |
+ |
|
-testPersistance |
-runner |
-
+testReadYearData |
+ |
|
-testConfigurationLoading |
-runner |
-
+testGetEarliestRecord |
+ |
- |
-readStatistics |
-runner |
+@BeforeClass |
|
-testRunLocally |
-runner |
+init |
+ |
+
+@BeforeMethod |
+
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.stat.servlet.util.StatCollectionTester |
+ | |
+
+@Test |
+ |
+testGetStats |
+ |
+
@BeforeClass |
@BeforeMethod |
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester |
+ | |
+
+@Test |
+
+
|
-init |
- |
+testSubmit |
+engine cluster |
+
+
+ |
+testCancel |
+engine cluster |
+
+
+ |
+testGetJobStatus |
+engine cluster |
+
+
+@BeforeClass |
+
+
+@BeforeMethod |
+
@AfterMethod |
@@ -466,30 +500,63 @@
@AfterClass |
-compbio.runner.msa.TcoffeeTester |
+compbio.engine.cluster.drmaa.DrmaaClusterEngineTester |
| |
@Test |
|
-testExecute |
-runner non_windows |
+testSubmit |
+engine cluster |
+
+
+ |
+testCancel |
+engine cluster |
+
+
+@BeforeClass |
+
+
+@BeforeMethod |
+
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.runner.conservation.AAConTester |
+ | |
+
+@Test |
+
+
+ |
+testRunOnCluster |
+runner |
+
+
+ |
+testRunLocallyWithPreset |
+runner |
|
testPersistance |
-cluster runner non_windows |
+runner |
|
-testNcore |
-runner non_windows |
+testRunOnClusterAsync |
+cluster runner |
|
-testClusterExecute |
-cluster runner non_windows |
+testRunLocallyOnTwoCpu |
+runner |
|
@@ -499,7 +566,12 @@
|
readStatistics |
-runner non_windows |
+runner |
+
+
+ |
+testRunLocally |
+runner |
@BeforeClass |
@@ -510,7 +582,37 @@
|
init |
-cluster runner non_windows |
+ |
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.runner._impl.RPSBlastTester |
+ | |
+
+@Test |
+
+
+ |
+testBuildCommand |
+cluster runner |
+
+
+ |
+testGetTestCommand |
+ |
+
+ |
+testGetTestArgsCommand |
+ |
+
+@BeforeClass |
+
+
+@BeforeMethod |
@AfterMethod |
@@ -519,14 +621,14 @@
@AfterClass |
-compbio.runner.msa.LimitTester |
+compbio.engine.PulledFileCacheTester |
| |
@Test |
|
-testLoadLimits |
+test |
|
@BeforeClass |
@@ -535,34 +637,121 @@
@BeforeMethod |
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.runner.disorder.DisemblTester |
+ | |
+
+@Test |
+
+
|
-setup |
+testRunOnCluster |
+cluster runner |
+
+
+ |
+testPersistance |
runner |
+ |
+testRunOnClusterAsync |
+cluster runner |
+
+
+ |
+testConfigurationLoading |
+runner |
+
+
+ |
+readStatistics |
+runner |
+
+
+ |
+testRunLocally |
+runner |
+
+
+@BeforeClass |
+
+
+@BeforeMethod |
+
+
+ |
+init |
+ |
+
@AfterMethod |
@AfterClass |
-compbio.runner._impl.OBTester |
+compbio.runner._impl.MclTester |
| |
@Test |
|
+testBuildCommand |
+cluster runner |
+
+
+ |
testGetTestCommand |
|
+@BeforeClass |
+
+
+@BeforeMethod |
+
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.engine.cluster.dundee._QueueTester |
+ | |
+
+@Test |
+
+
|
-testBuildCommand |
-cluster runner |
+testQueue |
+ |
+
+@BeforeClass |
+
+
+@BeforeMethod |
+
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.engine.LoadBalancerTester |
+ | |
+
+@Test |
|
-testGetTestArgsCommand |
+testLoadBalance |
|
@BeforeClass |
@@ -577,78 +766,177 @@
@AfterClass |
-compbio.engine.local.AsyncLocalRunnerTester |
+compbio.runner.msa.ProbconsParametersTester |
| |
@Test |
|
-testCancelLocally |
-engine |
+testConstrainedParametersMaxValues |
+runner non_windows |
|
-testMultipleCancelLocally |
-engine |
+testConstrainedParametersRandomValues |
+runner non_windows |
|
-testAsyncCancelOperation |
-engine |
+testConstrainedParametersMinValues |
+runner non_windows |
|
-testAsyncRetrievOperation |
-engine |
+testArguments |
+runner non_windows |
|
-testSubmitLocally |
-engine |
+testOptions |
+runner non_windows |
|
-testCancelCompletedTaskLocally |
-engine |
+testDefaultParameters |
+runner non_windows |
|
-testGetStatus |
-engine |
+testParameters |
+runner non_windows |
+ |
+testConfiguration |
+ |
+
@BeforeClass |
@BeforeMethod |
+ |
+setup |
+runner non_windows |
+
+
@AfterMethod |
@AfterClass |
-compbio.engine.local.LocalRunnerTester |
+compbio.metadata.RunnerConfigTester |
| |
@Test |
|
-testCancelLocally |
-engine |
+testValidateUpperBoundaryConstrainCheck |
+ |
+
+ |
+testOptionSetInvalidValue |
+ |
+
+ |
+testValidateBoundaryConstrainCheck |
+ |
+
+ |
+testValidateValueConstrain |
+ |
+
+ |
+testCreateParameterWithValidValueConstrain |
+ |
+
+ |
+testValidateLowerBoundaryConstrainCheck |
+ |
+
+ |
+testOptionNoDefaultValidate |
+ |
+
+ |
+testCreateParameter |
+ |
+
+ |
+testOptionToCommand |
+ |
+
+ |
+testParameterToCommand |
+ |
+
+ |
+testCreateNumParameterWithoutValidValue |
+ |
+
+ |
+testValidate |
+ |
+
+@BeforeClass |
+
+
+@BeforeMethod |
|
-testMultipleCancelLocally |
-engine |
+setup |
+ |
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.runner.disorder.JronnTester |
+ | |
+
+@Test |
|
-testCancelCompletedTaskLocally |
-engine |
+testRunOnCluster |
+cluster runner |
+
+
+ |
+testPersistance |
+runner |
+
+
+ |
+testRunOnClusterAsync |
+cluster runner |
+
+
+ |
+testRunLocallyOnTwoCpu |
+runner |
+
+
+ |
+testConfigurationLoading |
+runner |
+
+
+ |
+readStatistics |
+runner |
+
+
+ |
+testRunLocally |
+runner |
@BeforeClass |
@@ -657,27 +945,98 @@
@BeforeMethod |
+ |
+init |
+ |
+
@AfterMethod |
@AfterClass |
-compbio.runner._impl.Tmhmm2Tester |
+compbio.runner.msa.MafftParametersTester |
| |
@Test |
|
-testGetTestCommand |
+testConstrainedParametersMaxValues |
+runner non_windows |
+
+
+ |
+testConstrainedParametersRandomValues |
+runner non_windows |
+
+
+ |
+testConstrainedParametersMinValues |
+runner non_windows |
+
+
+ |
+testArguments |
+runner non_windows |
+
+
+ |
+testOptions |
+runner non_windows |
+
+
+ |
+testDefaultParameters |
+runner non_windows |
+
+
+ |
+testParameters |
+runner non_windows |
+
+
+ |
+testPresets |
+runner non_windows |
+
+
+ |
+testConfiguration |
|
+@BeforeClass |
+
+
+@BeforeMethod |
+
+
+ |
+setup |
+runner non_windows |
+
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.runner._impl.RonnTester |
+ | |
+
+@Test |
+
+
|
testBuildCommand |
cluster runner |
+ |
+testGetTestCommand |
+ |
+
@BeforeClass |
@@ -690,7 +1049,7 @@
@AfterClass |
-compbio.runner.msa.MafftTester |
+compbio.runner.msa.ProbconsTester |
| |
@Test |
@@ -702,11 +1061,6 @@
|
-testRunOnClusterAsyncCheckStatusShortPoolingTime |
-cluster runner non_windows |
-
-
- |
testPersistance |
runner non_windows |
@@ -731,11 +1085,6 @@
runner non_windows |
- |
-testRunOnClusterAsyncCheckStatusLongPoolingTime |
-cluster runner non_windows |
-
-
@BeforeClass |
@@ -753,27 +1102,40 @@
@AfterClass |
-compbio.data.sequence.ClustalAlignmentUtilTester |
+compbio.engine.conf.PropertyHelperManagerTester |
| |
@Test |
|
-testReadClustalFile |
+testClusterEngineConf |
+cluster |
+
+
+ |
+validateClustalConfiguration |
|
|
-testReadClustalFileLongNames |
+validateTcoffeeConfiguration |
|
|
-testReadClustalFileShortNames |
+validateMuscleConfiguration |
+ |
+
+ |
+validateMafftConfiguration |
|
@BeforeClass |
+ |
+testLoadResources |
+ |
+
@BeforeMethod |
@@ -783,55 +1145,60 @@
@AfterClass |
-compbio.runner.msa.MuscleParametersTester |
+compbio.metadata.OptionCombinatorTester |
| |
@Test |
|
-testConstrainedParametersMaxValues |
-runner |
-
+testgetAllParameters |
+ |
|
-testConstrainedParametersRandomValues |
-runner |
+testgetAllOptions |
+ |
+
+@BeforeClass |
- |
-testConstrainedParametersMinValues |
-runner |
+@BeforeMethod |
|
-testArguments |
-runner |
+setup |
+ |
+
+@AfterMethod |
- |
-testOptions |
-runner |
+@AfterClass |
- |
-testDefaultParameters |
-runner |
+compbio.engine.FilePullerTester |
+ | |
+
+@Test |
|
-testParameters |
-runner |
+testGet |
+ |
+
+ |
+testCache |
+engine |
|
-testPresets |
-runner |
+testGetDelay |
+engine |
|
-testConfiguration |
- |
+testPull |
+engine |
+
@BeforeClass |
@@ -839,48 +1206,46 @@
@BeforeMethod |
- |
-setup |
-runner |
-
-
@AfterMethod |
@AfterClass |
-compbio.data.sequence.FastaSequenceGeneratorTester |
+compbio.runner.msa.MuscleTester |
| |
@Test |
|
-testProteinSequenceGeneration |
- |
-
-@BeforeClass |
+testRunOnCluster |
+cluster runner |
-@BeforeMethod |
+ |
+testPersistance |
+runner |
-@AfterMethod |
+ |
+testRunOnClusterAsync |
+cluster runner |
-@AfterClass |
+ |
+testConfigurationLoading |
+runner |
-compbio.engine.cluster.drmaa.ClusterSessionTester |
- | |
-
-@Test |
+ |
+readStatistics |
+runner |
|
-testTaskList |
-engine cluster |
+testRunLocally |
+runner |
@BeforeClass |
@@ -889,21 +1254,51 @@
@BeforeMethod |
+ |
+init |
+ |
+
@AfterMethod |
@AfterClass |
-compbio.data.sequence.FastaSequenceTester |
+compbio.runner.msa.TcoffeeTester |
| |
@Test |
|
-testGetFormattedFasta |
- |
+testExecute |
+runner non_windows |
+
+
+ |
+testPersistance |
+cluster runner non_windows |
+
+
+ |
+testNcore |
+runner non_windows |
+
+
+ |
+testClusterExecute |
+cluster runner non_windows |
+
+
+ |
+testConfigurationLoading |
+runner |
+
+
+ |
+readStatistics |
+runner non_windows |
+
@BeforeClass |
@@ -911,24 +1306,34 @@
@BeforeMethod |
+ |
+init |
+cluster runner non_windows |
+
+
@AfterMethod |
@AfterClass |
-compbio.engine.client.PathValidatorTester |
+compbio.runner._impl.OBTester |
| |
@Test |
|
-testIsAbsolutePath |
+testBuildCommand |
+cluster runner |
+
+
+ |
+testGetTestCommand |
|
|
-testGetClassPath |
+testGetTestArgsCommand |
|
@BeforeClass |
@@ -943,30 +1348,18 @@
@AfterClass |
-compbio.data.sequence.SequenceUtilTester |
+compbio.runner.msa.LimitTester |
| |
@Test |
|
-testDeepCleanSequence |
- |
-
- |
-testReadWriteFasta |
- |
-
- |
-testisNonAmbNucleotideSequence |
- |
-
- |
-testisProteinSequence |
+testLimitExceeded |
|
|
-testCleanSequence |
+testLoadLimits |
|
@BeforeClass |
@@ -975,60 +1368,63 @@
@BeforeMethod |
+ |
+setup |
+runner |
+
+
@AfterMethod |
@AfterClass |
-compbio.runner.msa.TcoffeeParametersTester |
+compbio.engine.local.LocalRunnerTester |
| |
@Test |
|
-testConstrainedParametersMaxValues |
-runner non_windows |
+testCancelLocally |
+engine |
|
-testConstrainedParametersRandomValues |
-runner non_windows |
+testMultipleCancelLocally |
+engine |
|
-testConstrainedParametersMinValues |
-runner non_windows |
+testCancelCompletedTaskLocally |
+engine |
- |
-testArguments |
-runner non_windows |
+@BeforeClass |
- |
-testOptions |
-runner non_windows |
+@BeforeMethod |
- |
-testDefaultParameters |
-runner non_windows |
+@AfterMethod |
- |
-testParameters |
-runner non_windows |
+@AfterClass |
+
+
+compbio.runner._impl.Tmhmm2Tester |
+ | |
+
+@Test |
|
-testPresets |
-runner non_windows |
+testBuildCommand |
+cluster runner |
|
-testConfiguration |
+testGetTestCommand |
|
@BeforeClass |
@@ -1037,87 +1433,87 @@
@BeforeMethod |
- |
-setup |
-runner non_windows |
-
-
@AfterMethod |
@AfterClass |
-compbio.runner.msa.ClustalWTester |
+compbio.runner.msa.MuscleParametersTester |
| |
-
-@Test |
-
-
- |
-testRunOnCluster |
-cluster runner |
+
+@Test |
|
-testPersistance |
+testConstrainedParametersMaxValues |
runner |
|
-testAddParameters |
- |
+testConstrainedParametersRandomValues |
+runner |
+
|
-testOptionsLocally |
+testConstrainedParametersMinValues |
runner |
|
-readStatisticsClusterExecution |
-cluster runner |
+testArguments |
+runner |
|
-testConfigurationLoading |
+testOptions |
runner |
|
-testRunWithMatrix |
+testDefaultParameters |
runner |
|
-readStatistics |
+testParameters |
runner |
|
-testRunLocally |
+testPresets |
runner |
+ |
+testConfiguration |
+ |
+
@BeforeClass |
@BeforeMethod |
+ |
+setup |
+runner |
+
+
@AfterMethod |
@AfterClass |
-compbio.engine.cluster.drmaa.UtilTester |
+compbio.data.sequence.FastaSequenceGeneratorTester |
| |
@Test |
|
-testParser |
+testProteinSequenceGeneration |
|
@BeforeClass |
@@ -1132,19 +1528,16 @@
@AfterClass |
-compbio.engine.conf.DirectoryManagerTester |
+compbio.engine.cluster.drmaa.ClusterSessionTester |
| |
@Test |
|
-testGetDirectory |
- |
-
- |
-testNanoTime |
- |
+testTaskList |
+engine cluster |
+
@BeforeClass |
@@ -1158,21 +1551,15 @@
@AfterClass |
-compbio.engine.cluster.drmaa.DrmaaClusterEngineTester |
+compbio.data.sequence.FastaReaderTester |
| |
@Test |
|
-testSubmit |
-engine cluster |
-
-
- |
-testCancel |
-engine cluster |
-
+test |
+ |
@BeforeClass |
@@ -1186,26 +1573,15 @@
@AfterClass |
-compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester |
+compbio.data.sequence.FastaSequenceTester |
| |
@Test |
|
-testSubmit |
-engine cluster |
-
-
- |
-testCancel |
-engine cluster |
-
-
- |
-testGetJobStatus |
-engine cluster |
-
+testGetFormattedFasta |
+ |
@BeforeClass |
@@ -1219,44 +1595,58 @@
@AfterClass |
-compbio.metadata.PresetTester |
+compbio.data.sequence.SequenceUtilTester |
| |
@Test |
|
-marshallPreset |
+testReadIUPredForGlobDomain |
|
|
-validatePresets |
+testDeepCleanSequence |
|
-@BeforeClass |
-
+ |
+testReadIUPredForShortAndLongDisorder |
+ |
-@BeforeMethod |
-
+ |
+testCleanProteinSequence |
+ |
-@AfterMethod |
-
+ |
+testReadWriteFasta |
+ |
-@AfterClass |
-
+ |
+testReadAAConResults |
+ |
-compbio.metadata.OptionMarshallerTester |
- | |
+ |
+testReadGlobPlotResults |
+ |
-@Test |
-
+ |
+testReadDisemblResults |
+ |
|
-testUnMarshalling |
+loadJronnFile |
|
|
-testMarshalling |
+testisNonAmbNucleotideSequence |
+ |
+
+ |
+testisProteinSequence |
+ |
+
+ |
+testCleanSequence |
|
@BeforeClass |
@@ -1265,17 +1655,13 @@
@BeforeMethod |
- |
-setup |
- |
-
@AfterMethod |
@AfterClass |
-compbio.runner.msa.ClustalWParametersTester |
+compbio.runner.msa.TcoffeeParametersTester |
| |
@Test |
@@ -1283,42 +1669,42 @@
|
testConstrainedParametersMaxValues |
-runner |
+runner non_windows |
|
testConstrainedParametersRandomValues |
-runner |
+runner non_windows |
|
testConstrainedParametersMinValues |
-runner |
+runner non_windows |
|
testArguments |
-runner |
+runner non_windows |
|
testOptions |
-runner |
+runner non_windows |
|
testDefaultParameters |
-runner |
+runner non_windows |
|
testParameters |
-runner |
+runner non_windows |
|
testPresets |
-runner |
+runner non_windows |
|
@@ -1333,7 +1719,7 @@
|
setup |
-runner |
+runner non_windows |
@AfterMethod |
@@ -1342,25 +1728,78 @@
@AfterClass |
-compbio.runner._impl.RPSBlastTester |
+compbio.engine.cluster.drmaa.UtilTester |
| |
@Test |
|
-testGetTestCommand |
+testParser |
|
+@BeforeClass |
+
+
+@BeforeMethod |
+
+
+@AfterMethod |
+
+
+@AfterClass |
+
+
+compbio.runner.msa.ClustalWTester |
+ | |
+
+@Test |
+
+
|
-testBuildCommand |
+testRunOnCluster |
cluster runner |
|
-testGetTestArgsCommand |
+testAddParameters |
|
+ |
+testPersistance |
+runner |
+
+
+ |
+testOptionsLocally |
+runner |
+
+
+ |
+readStatisticsClusterExecution |
+cluster runner |
+
+
+ |
+testRunWithMatrix |
+runner |
+
+
+ |
+testConfigurationLoading |
+runner |
+
+
+ |
+readStatistics |
+runner |
+
+
+ |
+testRunLocally |
+runner |
+
+
@BeforeClass |
@@ -1373,14 +1812,18 @@
@AfterClass |
-compbio.engine.PulledFileCacheTester |
+compbio.engine.conf.DirectoryManagerTester |
| |
@Test |
|
-test |
+testGetDirectory |
+ |
+
+ |
+testNanoTime |
|
@BeforeClass |
@@ -1395,20 +1838,23 @@
@AfterClass |
-compbio.runner._impl.MclTester |
+compbio.metadata.PresetTester |
| |
@Test |
|
-testGetTestCommand |
+testPresetWithMuptiOptions |
|
|
-testBuildCommand |
-cluster runner |
-
+marshallPreset |
+ |
+
+ |
+validatePresets |
+ |
@BeforeClass |
@@ -1422,14 +1868,18 @@
@AfterClass |
-compbio.engine.cluster.dundee._QueueTester |
+compbio.metadata.OptionMarshallerTester |
| |
@Test |
|
-testQueue |
+testUnMarshalling |
+ |
+
+ |
+testMarshalling |
|
@BeforeClass |
@@ -1438,13 +1888,17 @@
@BeforeMethod |
+ |
+setup |
+ |
+
@AfterMethod |
@AfterClass |
-compbio.runner.msa.ProbconsParametersTester |
+compbio.runner.msa.ClustalWParametersTester |
| |
@Test |
@@ -1452,37 +1906,42 @@
|
testConstrainedParametersMaxValues |
-runner non_windows |
+runner |
|
testConstrainedParametersRandomValues |
-runner non_windows |
+runner |
|
testConstrainedParametersMinValues |
-runner non_windows |
+runner |
|
testArguments |
-runner non_windows |
+runner |
|
testOptions |
-runner non_windows |
+runner |
|
testDefaultParameters |
-runner non_windows |
+runner |
|
testParameters |
-runner non_windows |
+runner |
+
+
+ |
+testPresets |
+runner |
|
@@ -1497,7 +1956,7 @@
|
setup |
-runner non_windows |
+runner |
@AfterMethod |