X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=website%2Ftests%2Femailable-report.html;h=97fda3c4237d13df546e2719628413556e917a77;hb=140e024c6b00451dd933a9c25feac2d170d5f9f6;hp=25d37afdaa32d26be8f36d551b79f692ad127d4b;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git
diff --git a/website/tests/emailable-report.html b/website/tests/emailable-report.html
index 25d37af..97fda3c 100644
--- a/website/tests/emailable-report.html
+++ b/website/tests/emailable-report.html
@@ -29,52 +29,62 @@ div.shootout {padding:2em;border:3px #4854A8 solid}
| Test | Methods
Passed | Scenarios
Passed | # skipped | # failed | Total
Time | Included
Groups | Excluded
Groups |
|---|
-| Ant test | 154 | 165 | 0 | 0 | 524.4 seconds | | performance |
+| Ant test | 205 | 216 | 0 | 0 | 453.9 seconds | | webservices performance |
| Class | Method | # of
Scenarios | Time
(Msecs) |
|---|
| Ant test — passed |
|---|
-| compbio.data.sequence.ClustalAlignmentUtilTester | testReadClustalFile | 1 | 22 |
| testReadClustalFileLongNames | 1 | 52 |
| testReadClustalFileShortNames | 1 | 54 |
-| compbio.data.sequence.FastaSequenceGeneratorTester | testProteinSequenceGeneration | 1 | 8 |
-| compbio.data.sequence.FastaSequenceTester | testGetFormattedFasta | 1 | 0 |
-| compbio.data.sequence.SequenceUtilTester | testCleanSequence | 1 | 0 |
| testDeepCleanSequence | 1 | 0 |
| testReadWriteFasta | 1 | 16 |
| testisNonAmbNucleotideSequence | 1 | 0 |
| testisProteinSequence | 1 | 0 |
-| compbio.engine.EngineConfiguratorTester | testGetAsyncEngine | 1 | 296 |
| testGetSyncEngine | 1 | 0 |
-| compbio.engine.FilePullerTester | testCache (engine) | 1 | 6006 |
| testGet | 1 | 46 |
| testGetDelay (engine) | 1 | 0 |
| testPull (engine) | 1 | 450 |
-| compbio.engine.PulledFileCacheTester | test | 1 | 5187 |
-| compbio.engine.client.CommandBuilderTester | testCommandBuilding | 1 | 1 |
| testOptionsToCommand | 1 | 567 |
| testSpaceDelimiterExecutable | 1 | 0 |
-| compbio.engine.client.PathValidatorTester | testGetClassPath | 1 | 234 |
| testIsAbsolutePath | 1 | 0 |
-| compbio.engine.cluster.drmaa.ClusterSessionTester | testTaskList (engine, cluster) | 1 | 8964 |
-| compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester | testCancel (engine, cluster) | 1 | 1273 |
| testGetJobStatus (engine, cluster) | 1 | 20778 |
| testSubmit (engine, cluster) | 1 | 18714 |
-| compbio.engine.cluster.drmaa.DrmaaClusterEngineTester | testCancel (engine, cluster) | 1 | 1587 |
| testSubmit (engine, cluster) | 1 | 17835 |
-| compbio.engine.cluster.drmaa.UtilTester | testParser | 1 | 0 |
-| compbio.engine.cluster.dundee._QueueTester | testQueue | 1 | 0 |
-| compbio.engine.conf.DirectoryManagerTester | testGetDirectory | 4 | 111 |
-| compbio.engine.conf.PropertyHelperManagerTester | testClusterEngineConf (cluster) | 1 | 104 |
| validateClustalConfiguration | 1 | 43 |
| validateMafftConfiguration | 1 | 1 |
| validateMuscleConfiguration | 1 | 4 |
| validateTcoffeeConfiguration | 1 | 4 |
-| compbio.engine.conf.RunnerConfigMarshallerTester | testMarshalling | 1 | 20 |
| testSchemaFromCodeGeneration | 1 | 504 |
| testUnMarshalling | 1 | 580 |
| testValidation | 1 | 636 |
| testValidationOnMarshalling | 1 | 11 |
-| compbio.engine.local.AsyncLocalRunnerTester | testAsyncCancelOperation (engine) | 1 | 48 |
| testAsyncRetrievOperation (engine) | 1 | 560 |
| testCancelCompletedTaskLocally (engine) | 1 | 3053 |
| testCancelLocally (engine) | 1 | 27 |
| testGetStatus (engine) | 5 | 41735 |
| testMultipleCancelLocally (engine) | 1 | 267 |
| testSubmitLocally (engine) | 5 | 634 |
-| compbio.engine.local.LocalRunnerTester | testCancelCompletedTaskLocally (engine) | 1 | 336 |
| testCancelLocally (engine) | 1 | 20 |
| testMultipleCancelLocally (engine) | 1 | 58 |
-| compbio.metadata.OptionCombinatorTester | testgetAllOptions | 1 | 1 |
| testgetAllParameters | 1 | 3 |
-| compbio.metadata.OptionMarshallerTester | testMarshalling | 1 | 58 |
| testUnMarshalling | 1 | 386 |
-| compbio.metadata.PresetTester | marshallPreset | 1 | 899 |
| validatePresets | 1 | 1 |
-| compbio.metadata.RunnerConfigTester | testCreateNumParameterWithoutValidValue | 1 | 1 |
| testCreateParameter | 1 | 0 |
| testCreateParameterWithValidValueConstrain | 1 | 0 |
| testOptionNoDefaultValidate | 1 | 0 |
| testOptionSetInvalidValue | 1 | 1 |
| testOptionToCommand | 1 | 0 |
| testParameterToCommand | 1 | 0 |
| testValidate | 1 | 0 |
| testValidateBoundaryConstrainCheck | 1 | 1 |
| testValidateLowerBoundaryConstrainCheck | 1 | 0 |
| testValidateUpperBoundaryConstrainCheck | 1 | 0 |
| testValidateValueConstrain | 1 | 0 |
-| compbio.runner._impl.MclTester | testGetTestCommand | 1 | 1 |
-| compbio.runner._impl.NetNglycTester | testGetTestCommand | 1 | 0 |
-| compbio.runner._impl.OBTester | testGetTestArgsCommand | 1 | 0 |
| testGetTestCommand | 1 | 0 |
-| compbio.runner._impl.RPSBlastTester | testGetTestArgsCommand | 1 | 0 |
| testGetTestCommand | 1 | 0 |
-| compbio.runner._impl.RonnTester | testGetTestCommand | 1 | 0 |
-| compbio.runner._impl.Tmhmm2Tester | testGetTestCommand | 1 | 0 |
-| compbio.runner.msa.ClustalWParametersTester | testArguments (runner) | 1 | 3518 |
| testConfiguration | 1 | 1 |
| testConstrainedParametersMaxValues (runner) | 1 | 1835 |
| testConstrainedParametersMinValues (runner) | 1 | 1232 |
| testConstrainedParametersRandomValues (runner) | 1 | 3105 |
| testDefaultParameters (runner) | 1 | 502 |
| testOptions (runner) | 1 | 2109 |
| testParameters (runner) | 1 | 2680 |
| testPresets (runner) | 1 | 177 |
-| compbio.runner.msa.ClustalWTester | readStatistics (runner) | 1 | 1178 |
| readStatisticsClusterExecution (cluster, runner) | 1 | 8121 |
| testConfigurationLoading (runner) | 1 | 688 |
| testOptionsLocally (runner) | 1 | 1932 |
| testPersistance (runner) | 1 | 431 |
| testRunLocally (runner) | 1 | 171 |
| testRunOnCluster (cluster, runner) | 1 | 15937 |
| testRunWithMatrix (runner) | 1 | 824 |
-| compbio.runner.msa.LimitTester | testLoadLimits | 1 | 0 |
-| compbio.runner.msa.MafftParametersTester | testArguments (runner, non_windows) | 1 | 6103 |
| testConfiguration | 1 | 1 |
| testConstrainedParametersMaxValues (runner, non_windows) | 1 | 3235 |
| testConstrainedParametersMinValues (runner, non_windows) | 1 | 1326 |
| testConstrainedParametersRandomValues (runner, non_windows) | 1 | 7672 |
| testDefaultParameters (runner, non_windows) | 1 | 20463 |
| testOptions (runner, non_windows) | 1 | 4449 |
| testParameters (runner, non_windows) | 1 | 2422 |
| testPresets (runner, non_windows) | 1 | 2136 |
-| compbio.runner.msa.MafftTester | readStatistics (runner, non_windows) | 1 | 639 |
| testClusterExecute (cluster, runner, non_windows) | 1 | 11340 |
| testConfigurationLoading (runner) | 1 | 435 |
| testExecute (runner, non_windows) | 1 | 428 |
| testPersistance (runner, non_windows) | 1 | 1033 |
| testRunOnClusterAsyncCheckStatusLongPoolingTime (cluster, runner, non_windows) | 1 | 21418 |
| testSetInputTester (runner, non_windows) | 1 | 0 |
-| compbio.runner.msa.MuscleParametersTester | testArguments (runner) | 1 | 7798 |
| testConfiguration | 1 | 0 |
| testConstrainedParametersMaxValues (runner) | 1 | 1534 |
| testConstrainedParametersMinValues (runner) | 1 | 845 |
| testConstrainedParametersRandomValues (runner) | 1 | 7603 |
| testDefaultParameters (runner) | 1 | 622 |
| testOptions (runner) | 1 | 2481 |
| testParameters (runner) | 1 | 4773 |
| testPresets (runner) | 1 | 856 |
-| compbio.runner.msa.MuscleTester | readStatistics (runner) | 1 | 932 |
| testConfigurationLoading (runner) | 1 | 313 |
| testPersistance (runner) | 1 | 241 |
| testRunLocally (runner) | 1 | 101 |
| testRunOnCluster (cluster, runner) | 1 | 8142 |
-| compbio.runner.msa.ProbconsParametersTester | testArguments (runner, non_windows) | 1 | 2874 |
| testConfiguration | 1 | 1 |
| testConstrainedParametersMaxValues (runner, non_windows) | 1 | 38416 |
| testConstrainedParametersMinValues (runner, non_windows) | 1 | 768 |
| testConstrainedParametersRandomValues (runner, non_windows) | 1 | 61881 |
| testDefaultParameters (runner, non_windows) | 1 | 14704 |
| testOptions (runner, non_windows) | 1 | 433 |
| testParameters (runner, non_windows) | 1 | 1321 |
-| compbio.runner.msa.ProbconsTester | readStatistics (runner, non_windows) | 1 | 441 |
| testClusterExecute (cluster, runner, non_windows) | 1 | 19326 |
| testConfigurationLoading (runner) | 1 | 107 |
| testExecute (runner, non_windows) | 1 | 436 |
| testPersistance (runner, non_windows) | 1 | 509 |
| testSetInputTester (runner, non_windows) | 1 | 0 |
-| compbio.runner.msa.TcoffeeParametersTester | testArguments (runner, non_windows) | 1 | 8765 |
| testConfiguration | 1 | 0 |
| testConstrainedParametersMaxValues (runner, non_windows) | 1 | 11166 |
| testConstrainedParametersMinValues (runner, non_windows) | 1 | 5507 |
| testConstrainedParametersRandomValues (runner, non_windows) | 1 | 21942 |
| testDefaultParameters (runner, non_windows) | 1 | 10988 |
| testOptions (runner, non_windows) | 1 | 891 |
| testParameters (runner, non_windows) | 1 | 12717 |
| testPresets (runner, non_windows) | 1 | 1094 |
-compbio.runner.msa.TcoffeeTester
"Ant test" | readStatistics (runner, non_windows) | 1 | 876 |
| testClusterExecute (cluster, runner, non_windows) | 1 | 5526 |
| testConfigurationLoading (runner) | 1 | 99 |
| testExecute (runner, non_windows) | 1 | 868 |
| testNcore (runner, non_windows) | 1 | 1 |
| testPersistance (cluster, runner, non_windows) | 1 | 1771 |
+| compbio.data.sequence.ClustalAlignmentUtilTester | testReadClustalFile | 1 | 12 |
| testReadClustalFileLongNames | 1 | 19 |
| testReadClustalFileShortNames | 1 | 14 |
+| compbio.data.sequence.FastaReaderTester | test | 1 | 18 |
+| compbio.data.sequence.FastaSequenceGeneratorTester | testProteinSequenceGeneration | 1 | 7 |
+| compbio.data.sequence.FastaSequenceTester | testGetFormattedFasta | 1 | 0 |
+| compbio.data.sequence.SequenceUtilTester | loadJronnFile | 1 | 27 |
| testCleanProteinSequence | 1 | 1 |
| testCleanSequence | 1 | 0 |
| testDeepCleanSequence | 1 | 0 |
| testReadAAConResults | 1 | 269 |
| testReadDisemblResults | 1 | 125 |
| testReadGlobPlotResults | 1 | 104 |
| testReadIUPredForGlobDomain | 1 | 6 |
| testReadIUPredForShortAndLongDisorder | 1 | 36 |
| testReadWriteFasta | 1 | 8 |
| testisNonAmbNucleotideSequence | 1 | 1 |
| testisProteinSequence | 1 | 0 |
+| compbio.engine.EngineConfiguratorTester | testGetAsyncEngine | 1 | 12 |
| testGetSyncEngine | 1 | 1 |
+| compbio.engine.FilePullerTester | testCache (engine) | 1 | 6008 |
| testGet | 1 | 2 |
| testGetDelay (engine) | 1 | 0 |
| testPull (engine) | 1 | 14 |
+| compbio.engine.LoadBalancerTester | testLoadBalance | 1 | 57 |
+| compbio.engine.PulledFileCacheTester | test | 1 | 5011 |
+| compbio.engine.client.CommandBuilderTester | testCommandBuilding | 1 | 1 |
| testOptionsToCommand | 1 | 40 |
| testSpaceDelimiterExecutable | 1 | 0 |
+| compbio.engine.client.PathValidatorTester | testGetClassPath | 1 | 1 |
| testIsAbsolutePath | 1 | 0 |
+| compbio.engine.cluster.drmaa.ClusterSessionTester | testTaskList (engine, cluster) | 1 | 3953 |
+| compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester | testCancel (engine, cluster) | 1 | 1257 |
| testGetJobStatus (engine, cluster) | 1 | 4765 |
| testSubmit (engine, cluster) | 1 | 3976 |
+| compbio.engine.cluster.drmaa.DrmaaClusterEngineTester | testCancel (engine, cluster) | 1 | 1538 |
| testSubmit (engine, cluster) | 1 | 3508 |
+| compbio.engine.cluster.drmaa.UtilTester | testParser | 1 | 1 |
+| compbio.engine.cluster.dundee._QueueTester | testQueue | 1 | 0 |
+| compbio.engine.conf.DirectoryManagerTester | testGetDirectory | 4 | 105 |
+| compbio.engine.conf.PropertyHelperManagerTester | testClusterEngineConf (cluster) | 1 | 1 |
| validateClustalConfiguration | 1 | 0 |
| validateMafftConfiguration | 1 | 2 |
| validateMuscleConfiguration | 1 | 0 |
| validateTcoffeeConfiguration | 1 | 0 |
+| compbio.engine.conf.RunnerConfigMarshallerTester | testMarshalling | 1 | 4 |
| testSchemaFromCodeGeneration | 1 | 130 |
| testUnMarshalling | 1 | 17 |
| testValidation | 1 | 82 |
| testValidationOnMarshalling | 1 | 10 |
+| compbio.engine.local.AsyncLocalRunnerTester | testAsyncCancelOperation (engine) | 1 | 17 |
| testAsyncRetrievOperation (engine) | 1 | 124 |
| testCancelCompletedTaskLocally (engine) | 1 | 3017 |
| testCancelLocally (engine) | 1 | 13 |
| testGetStatus (engine) | 5 | 38622 |
| testMultipleCancelLocally (engine) | 1 | 54 |
| testSubmitLocally (engine) | 5 | 229 |
+| compbio.engine.local.LocalRunnerTester | testCancelCompletedTaskLocally (engine) | 1 | 49 |
| testCancelLocally (engine) | 1 | 17 |
| testMultipleCancelLocally (engine) | 1 | 44 |
+| compbio.metadata.OptionCombinatorTester | testgetAllOptions | 1 | 1 |
| testgetAllParameters | 1 | 3 |
+| compbio.metadata.OptionMarshallerTester | testMarshalling | 1 | 33 |
| testUnMarshalling | 1 | 65 |
+| compbio.metadata.PresetTester | marshallPreset | 1 | 14 |
| testPresetWithMuptiOptions | 1 | 1 |
| validatePresets | 1 | 1 |
+| compbio.metadata.RunnerConfigTester | testCreateNumParameterWithoutValidValue | 1 | 0 |
| testCreateParameter | 1 | 0 |
| testCreateParameterWithValidValueConstrain | 1 | 0 |
| testOptionNoDefaultValidate | 1 | 0 |
| testOptionSetInvalidValue | 1 | 0 |
| testOptionToCommand | 1 | 0 |
| testParameterToCommand | 1 | 0 |
| testValidate | 1 | 0 |
| testValidateBoundaryConstrainCheck | 1 | 0 |
| testValidateLowerBoundaryConstrainCheck | 1 | 0 |
| testValidateUpperBoundaryConstrainCheck | 1 | 1 |
| testValidateValueConstrain | 1 | 0 |
+| compbio.runner._impl.MclTester | testGetTestCommand | 1 | 0 |
+| compbio.runner._impl.NetNglycTester | testGetTestCommand | 1 | 1 |
+| compbio.runner._impl.OBTester | testGetTestArgsCommand | 1 | 0 |
| testGetTestCommand | 1 | 0 |
+| compbio.runner._impl.RPSBlastTester | testGetTestArgsCommand | 1 | 0 |
| testGetTestCommand | 1 | 0 |
+| compbio.runner._impl.RonnTester | testGetTestCommand | 1 | 0 |
+| compbio.runner._impl.Tmhmm2Tester | testGetTestCommand | 1 | 0 |
+| compbio.runner.conservation.AAConTester | readStatistics (runner) | 1 | 1493 |
| testConfigurationLoading (runner) | 1 | 113 |
| testPersistance (runner) | 1 | 775 |
| testRunLocally (runner) | 1 | 827 |
| testRunLocallyOnTwoCpu (runner) | 1 | 289 |
| testRunLocallyWithPreset (runner) | 1 | 653 |
| testRunOnCluster (runner) | 1 | 3640 |
| testRunOnClusterAsync (cluster, runner) | 1 | 5018 |
+| compbio.runner.disorder.DisemblTester | readStatistics (runner) | 1 | 0 |
| testConfigurationLoading (runner) | 1 | 44 |
| testPersistance (runner) | 1 | 1297 |
| testRunLocally (runner) | 1 | 579 |
| testRunOnCluster (cluster, runner) | 1 | 2047 |
| testRunOnClusterAsync (cluster, runner) | 1 | 6011 |
+| compbio.runner.disorder.GlobPlotTester | readStatistics (runner) | 1 | 0 |
| testConfigurationLoading (runner) | 1 | 43 |
| testPersistance (runner) | 1 | 980 |
| testRunLocally (runner) | 1 | 454 |
| testRunOnCluster (cluster, runner) | 1 | 2503 |
| testRunOnClusterAsync (cluster, runner) | 1 | 6021 |
+| compbio.runner.disorder.IUPredTester | testConfigurationLoading (runner) | 1 | 69 |
| testPersistance (runner) | 1 | 308 |
| testReadResults (runner) | 1 | 25 |
| testRunLocally (runner) | 1 | 196 |
| testRunLocallyWithParams (runner) | 1 | 71 |
| testRunOnCluster (cluster, runner) | 1 | 3308 |
| testRunOnClusterAsync (cluster, runner) | 1 | 6025 |
| testSetParameter (runner) | 1 | 0 |
+| compbio.runner.disorder.JronnTester | readStatistics (runner) | 1 | 18639 |
| testConfigurationLoading (runner) | 1 | 45 |
| testPersistance (runner) | 1 | 18613 |
| testRunLocally (runner) | 1 | 18541 |
| testRunLocallyOnTwoCpu (runner) | 1 | 7131 |
| testRunOnCluster (cluster, runner) | 1 | 13058 |
| testRunOnClusterAsync (cluster, runner) | 1 | 11022 |
+| compbio.runner.msa.ClustalWParametersTester | testArguments (runner) | 1 | 1649 |
| testConfiguration | 1 | 1 |
| testConstrainedParametersMaxValues (runner) | 1 | 678 |
| testConstrainedParametersMinValues (runner) | 1 | 682 |
| testConstrainedParametersRandomValues (runner) | 1 | 672 |
| testDefaultParameters (runner) | 1 | 129 |
| testOptions (runner) | 1 | 396 |
| testParameters (runner) | 1 | 1074 |
| testPresets (runner) | 1 | 129 |
+| compbio.runner.msa.ClustalWTester | readStatistics (runner) | 1 | 518 |
| readStatisticsClusterExecution (cluster, runner) | 1 | 1640 |
| testConfigurationLoading (runner) | 1 | 46 |
| testOptionsLocally (runner) | 1 | 429 |
| testPersistance (runner) | 1 | 303 |
| testRunLocally (runner) | 1 | 132 |
| testRunOnCluster (cluster, runner) | 1 | 5003 |
| testRunWithMatrix (runner) | 1 | 130 |
+| compbio.runner.msa.LimitTester | testLimitExceeded | 1 | 14 |
| testLoadLimits | 1 | 0 |
+| compbio.runner.msa.MafftParametersTester | testArguments (runner, non_windows) | 1 | 3027 |
| testConfiguration | 1 | 0 |
| testConstrainedParametersMaxValues (runner, non_windows) | 1 | 1461 |
| testConstrainedParametersMinValues (runner, non_windows) | 1 | 886 |
| testConstrainedParametersRandomValues (runner, non_windows) | 1 | 3530 |
| testDefaultParameters (runner, non_windows) | 1 | 4507 |
| testOptions (runner, non_windows) | 1 | 971 |
| testParameters (runner, non_windows) | 1 | 1179 |
| testPresets (runner, non_windows) | 1 | 965 |
+| compbio.runner.msa.MafftTester | readStatistics (runner, non_windows) | 1 | 516 |
| testClusterExecute (cluster, runner, non_windows) | 1 | 1264 |
| testConfigurationLoading (runner) | 1 | 62 |
| testExecute (runner, non_windows) | 1 | 162 |
| testPersistance (runner, non_windows) | 1 | 305 |
| testRunOnClusterAsyncCheckStatusLongPoolingTime (cluster, runner, non_windows) | 1 | 5535 |
| testSetInputTester (runner, non_windows) | 1 | 0 |
+| compbio.runner.msa.MuscleParametersTester | testArguments (runner) | 1 | 4387 |
| testConfiguration | 1 | 1 |
| testConstrainedParametersMaxValues (runner) | 1 | 1977 |
| testConstrainedParametersMinValues (runner) | 1 | 1112 |
| testConstrainedParametersRandomValues (runner) | 1 | 2749 |
| testDefaultParameters (runner) | 1 | 100 |
| testOptions (runner) | 1 | 1360 |
| testParameters (runner) | 1 | 1919 |
| testPresets (runner) | 1 | 242 |
+| compbio.runner.msa.MuscleTester | readStatistics (runner) | 1 | 520 |
| testConfigurationLoading (runner) | 1 | 43 |
| testPersistance (runner) | 1 | 233 |
| testRunLocally (runner) | 1 | 100 |
| testRunOnCluster (cluster, runner) | 1 | 3867 |
+| compbio.runner.msa.ProbconsParametersTester | testArguments (runner, non_windows) | 1 | 1819 |
| testConfiguration | 1 | 0 |
| testConstrainedParametersMaxValues (runner, non_windows) | 1 | 37102 |
| testConstrainedParametersMinValues (runner, non_windows) | 1 | 768 |
| testConstrainedParametersRandomValues (runner, non_windows) | 1 | 70319 |
| testDefaultParameters (runner, non_windows) | 1 | 4845 |
| testOptions (runner, non_windows) | 1 | 443 |
| testParameters (runner, non_windows) | 1 | 1344 |
+| compbio.runner.msa.ProbconsTester | readStatistics (runner, non_windows) | 1 | 455 |
| testClusterExecute (cluster, runner, non_windows) | 1 | 2710 |
| testConfigurationLoading (runner) | 1 | 89 |
| testExecute (runner, non_windows) | 1 | 455 |
| testPersistance (runner, non_windows) | 1 | 527 |
| testSetInputTester (runner, non_windows) | 1 | 0 |
+| compbio.runner.msa.TcoffeeParametersTester | testArguments (runner, non_windows) | 1 | 4098 |
| testConfiguration | 1 | 0 |
| testConstrainedParametersMaxValues (runner, non_windows) | 1 | 4319 |
| testConstrainedParametersMinValues (runner, non_windows) | 1 | 2887 |
| testConstrainedParametersRandomValues (runner, non_windows) | 1 | 8762 |
| testDefaultParameters (runner, non_windows) | 1 | 3850 |
| testOptions (runner, non_windows) | 1 | 377 |
| testParameters (runner, non_windows) | 1 | 3800 |
| testPresets (runner, non_windows) | 1 | 214 |
+| compbio.runner.msa.TcoffeeTester | readStatistics (runner, non_windows) | 1 | 516 |
| testClusterExecute (cluster, runner, non_windows) | 1 | 5084 |
| testConfigurationLoading (runner) | 1 | 39 |
| testExecute (runner, non_windows) | 1 | 364 |
| testNcore (runner, non_windows) | 1 | 0 |
| testPersistance (cluster, runner, non_windows) | 1 | 769 |
+| compbio.stat.collector.ExecutionStatCollectorTester | testCollectStat | 1 | 271 |
| testHasCompleted | 1 | 1 |
| testUpdateStatTester | 1 | 35012 |
+| compbio.stat.collector.StatDBTester | testVerifyJobsCount | 1 | 412 |
+compbio.stat.servlet.util.StatCollectionTester
"Ant test" | testGetStats | 1 | 22 |
Ant test
compbio.data.sequence.ClustalAlignmentUtilTester:testReadClustalFile
@@ -83,103 +93,121 @@ div.shootout {padding:2em;border:3px #4854A8 solid}
back to summary
compbio.data.sequence.ClustalAlignmentUtilTester:testReadClustalFileShortNames
back to summary
-compbio.data.sequence.FastaSequenceGeneratorTester:testProteinSequenceGeneration
+compbio.data.sequence.FastaReaderTester:test
back to summary
-compbio.data.sequence.FastaSequenceTester:testGetFormattedFasta
+compbio.data.sequence.FastaSequenceGeneratorTester:testProteinSequenceGeneration
back to summary
-compbio.data.sequence.SequenceUtilTester:testCleanSequence
+compbio.data.sequence.FastaSequenceTester:testGetFormattedFasta
back to summary
-compbio.data.sequence.SequenceUtilTester:testDeepCleanSequence
+compbio.data.sequence.SequenceUtilTester:loadJronnFile
back to summary
-compbio.data.sequence.SequenceUtilTester:testReadWriteFasta
+compbio.data.sequence.SequenceUtilTester:testCleanProteinSequence
back to summary
-compbio.data.sequence.SequenceUtilTester:testisNonAmbNucleotideSequence
+compbio.data.sequence.SequenceUtilTester:testCleanSequence
back to summary
-compbio.data.sequence.SequenceUtilTester:testisProteinSequence
+compbio.data.sequence.SequenceUtilTester:testDeepCleanSequence
back to summary
-compbio.engine.EngineConfiguratorTester:testGetAsyncEngine
+compbio.data.sequence.SequenceUtilTester:testReadAAConResults
back to summary
-compbio.engine.EngineConfiguratorTester:testGetSyncEngine
+compbio.data.sequence.SequenceUtilTester:testReadDisemblResults
back to summary
-compbio.engine.FilePullerTester:testCache
+compbio.data.sequence.SequenceUtilTester:testReadGlobPlotResults
back to summary
-compbio.engine.FilePullerTester:testGet
+compbio.data.sequence.SequenceUtilTester:testReadIUPredForGlobDomain
back to summary
-compbio.engine.FilePullerTester:testGetDelay
+compbio.data.sequence.SequenceUtilTester:testReadIUPredForShortAndLongDisorder
back to summary
-compbio.engine.FilePullerTester:testPull
+compbio.data.sequence.SequenceUtilTester:testReadWriteFasta
back to summary
-compbio.engine.PulledFileCacheTester:test
+compbio.data.sequence.SequenceUtilTester:testisNonAmbNucleotideSequence
back to summary
-compbio.engine.client.CommandBuilderTester:testCommandBuilding
+compbio.data.sequence.SequenceUtilTester:testisProteinSequence
back to summary
-compbio.engine.client.CommandBuilderTester:testOptionsToCommand
+compbio.engine.EngineConfiguratorTester:testGetAsyncEngine
back to summary
-compbio.engine.client.CommandBuilderTester:testSpaceDelimiterExecutable
+compbio.engine.EngineConfiguratorTester:testGetSyncEngine
back to summary
-compbio.engine.client.PathValidatorTester:testGetClassPath
+compbio.engine.FilePullerTester:testCache
back to summary
-compbio.engine.client.PathValidatorTester:testIsAbsolutePath
+compbio.engine.FilePullerTester:testGet
back to summary
-compbio.engine.cluster.drmaa.ClusterSessionTester:testTaskList
+compbio.engine.FilePullerTester:testGetDelay
back to summary
-compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester:testCancel
+compbio.engine.FilePullerTester:testPull
+back to summary
+compbio.engine.LoadBalancerTester:testLoadBalance
+back to summary
+compbio.engine.PulledFileCacheTester:test
+back to summary
+compbio.engine.client.CommandBuilderTester:testCommandBuilding
+back to summary
+compbio.engine.client.CommandBuilderTester:testOptionsToCommand
+back to summary
+compbio.engine.client.CommandBuilderTester:testSpaceDelimiterExecutable
+back to summary
+compbio.engine.client.PathValidatorTester:testGetClassPath
+back to summary
+compbio.engine.client.PathValidatorTester:testIsAbsolutePath
+back to summary
+compbio.engine.cluster.drmaa.ClusterSessionTester:testTaskList
+back to summary
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester:testCancel
-
java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found!
-compbio.runner.msa.ClustalW.getResults(ClustalW.java:79)
-
at compbio.runner.msa.ClustalW.getResults(ClustalW.java:37)
-
at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:206)
+
java.io.FileNotFoundException: Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+compbio.runner.msa.ClustalW.getResults(ClustalW.java:73)
+
at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34)
+
at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207)
at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109)
23 lines not shown
-
Caused by Result for the jobId /homes/pvtroshin/workspace/clustengine/jobsout/local/ClustalW#6731244848891847 with file name TO1381.clustal.cluster.out is not found!
-compbio.runner.Util.readClustalFile(Util.java:126)
-
at compbio.runner.msa.ClustalW.getResults(ClustalW.java:76)
-
at compbio.runner.msa.ClustalW.getResults(ClustalW.java:37)
-
at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:206)
+
Caused by Result for the jobId /homes/pvtroshin/workspace/jaba2/local_jobsout/ClustalW#6405924652151282 with file name TO1381.clustal.cluster.out is not found!
+compbio.runner.Util.readClustalFile(Util.java:93)
+
at compbio.runner.msa.ClustalW.getResults(ClustalW.java:70)
+
at compbio.runner.msa.ClustalW.getResults(ClustalW.java:34)
+
at compbio.engine.client.ConfExecutable.getResults(ConfExecutable.java:207)
at compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester.testCancel(DrmaaAsyncClusterEngineTester.java:109)
23 lines not shown
back to summary
-compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester:testGetJobStatus
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester:testGetJobStatus
back to summary
-compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester:testSubmit
+compbio.engine.cluster.drmaa.DrmaaAsyncClusterEngineTester:testSubmit
back to summary
-compbio.engine.cluster.drmaa.DrmaaClusterEngineTester:testCancel
+compbio.engine.cluster.drmaa.DrmaaClusterEngineTester:testCancel
back to summary
-compbio.engine.cluster.drmaa.DrmaaClusterEngineTester:testSubmit
+compbio.engine.cluster.drmaa.DrmaaClusterEngineTester:testSubmit
back to summary
-compbio.engine.cluster.drmaa.UtilTester:testParser
+compbio.engine.cluster.drmaa.UtilTester:testParser
back to summary
-compbio.engine.cluster.dundee._QueueTester:testQueue
+compbio.engine.cluster.dundee._QueueTester:testQueue
back to summary
-compbio.engine.conf.DirectoryManagerTester:testGetDirectory
+compbio.engine.conf.DirectoryManagerTester:testGetDirectory
back to summary
-compbio.engine.conf.PropertyHelperManagerTester:testClusterEngineConf
+compbio.engine.conf.PropertyHelperManagerTester:testClusterEngineConf
back to summary
-compbio.engine.conf.PropertyHelperManagerTester:validateClustalConfiguration
+compbio.engine.conf.PropertyHelperManagerTester:validateClustalConfiguration
back to summary
-compbio.engine.conf.PropertyHelperManagerTester:validateMafftConfiguration
+compbio.engine.conf.PropertyHelperManagerTester:validateMafftConfiguration
back to summary
-compbio.engine.conf.PropertyHelperManagerTester:validateMuscleConfiguration
+compbio.engine.conf.PropertyHelperManagerTester:validateMuscleConfiguration
back to summary
-compbio.engine.conf.PropertyHelperManagerTester:validateTcoffeeConfiguration
+compbio.engine.conf.PropertyHelperManagerTester:validateTcoffeeConfiguration
back to summary
-compbio.engine.conf.RunnerConfigMarshallerTester:testMarshalling
+compbio.engine.conf.RunnerConfigMarshallerTester:testMarshalling
back to summary
-compbio.engine.conf.RunnerConfigMarshallerTester:testSchemaFromCodeGeneration
+compbio.engine.conf.RunnerConfigMarshallerTester:testSchemaFromCodeGeneration
back to summary
-compbio.engine.conf.RunnerConfigMarshallerTester:testUnMarshalling
+compbio.engine.conf.RunnerConfigMarshallerTester:testUnMarshalling
back to summary
-compbio.engine.conf.RunnerConfigMarshallerTester:testValidation
+compbio.engine.conf.RunnerConfigMarshallerTester:testValidation
back to summary
-compbio.engine.conf.RunnerConfigMarshallerTester:testValidationOnMarshalling
+compbio.engine.conf.RunnerConfigMarshallerTester:testValidationOnMarshalling
null
-com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328)
-
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
+
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
-
at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:258)
+
at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259)
23 lines not shown
Caused by cvc-complex-type.2.4.a: Invalid content was found starting with element 'options'. One of '{runnerClassName}' is expected.
com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:195)
@@ -192,32 +220,32 @@ com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseExcept
at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
-
at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124)
-
at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697)
-
at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
-
at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
-
at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
-
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592)
-
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493)
-
at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
-
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+
at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
+
at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
+
at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
+
at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
+
at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
+
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
+
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
+
at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
+
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
-
at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:258)
+
at compbio.engine.conf.RunnerConfigMarshallerTester.testValidationOnMarshalling(RunnerConfigMarshallerTester.java:259)
23 lines not shown
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testAsyncCancelOperation
+compbio.engine.local.AsyncLocalRunnerTester:testAsyncCancelOperation
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testAsyncRetrievOperation
+compbio.engine.local.AsyncLocalRunnerTester:testAsyncRetrievOperation
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testCancelCompletedTaskLocally
+compbio.engine.local.AsyncLocalRunnerTester:testCancelCompletedTaskLocally
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testCancelLocally
+compbio.engine.local.AsyncLocalRunnerTester:testCancelLocally
null
java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
@@ -228,9 +256,9 @@ java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
23 lines not shown
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testGetStatus
+compbio.engine.local.AsyncLocalRunnerTester:testGetStatus
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testMultipleCancelLocally
+compbio.engine.local.AsyncLocalRunnerTester:testMultipleCancelLocally
null
java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
@@ -241,9 +269,9 @@ java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
23 lines not shown
back to summary
-compbio.engine.local.AsyncLocalRunnerTester:testSubmitLocally
+compbio.engine.local.AsyncLocalRunnerTester:testSubmitLocally
back to summary
-compbio.engine.local.LocalRunnerTester:testCancelCompletedTaskLocally
+compbio.engine.local.LocalRunnerTester:testCancelCompletedTaskLocally
null
java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
@@ -254,7 +282,7 @@ java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
23 lines not shown
back to summary
-compbio.engine.local.LocalRunnerTester:testCancelLocally
+compbio.engine.local.LocalRunnerTester:testCancelLocally
null
java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
@@ -265,7 +293,7 @@ java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
23 lines not shown
back to summary
-compbio.engine.local.LocalRunnerTester:testMultipleCancelLocally
+compbio.engine.local.LocalRunnerTester:testMultipleCancelLocally
null
java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
@@ -276,15 +304,15 @@ java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:220)
23 lines not shown
back to summary
-compbio.metadata.OptionCombinatorTester:testgetAllOptions
+compbio.metadata.OptionCombinatorTester:testgetAllOptions
back to summary
-compbio.metadata.OptionCombinatorTester:testgetAllParameters
+compbio.metadata.OptionCombinatorTester:testgetAllParameters
back to summary
-compbio.metadata.OptionMarshallerTester:testMarshalling
+compbio.metadata.OptionMarshallerTester:testMarshalling
null
-com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:328)
-
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:323)
+
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140)
@@ -300,32 +328,34 @@ com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseExcept
at com.sun.org.apache.xerces.internal.impl.xs.XMLSchemaValidator.startElement(XMLSchemaValidator.java:685)
at com.sun.org.apache.xerces.internal.jaxp.validation.ValidatorHandlerImpl.startElement(ValidatorHandlerImpl.java:549)
at org.xml.sax.helpers.XMLFilterImpl.startElement(XMLFilterImpl.java:527)
-
at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:124)
-
at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:102)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:305)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:697)
-
at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:65)
-
at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:168)
-
at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:152)
-
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:332)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:592)
-
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:320)
-
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:493)
-
at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:325)
-
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:254)
+
at com.sun.xml.bind.v2.runtime.output.SAXOutput.endStartTag(SAXOutput.java:128)
+
at com.sun.xml.bind.v2.runtime.output.ForkXmlOutput.endStartTag(ForkXmlOutput.java:106)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.endAttributes(XMLSerializer.java:310)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsXsiType(XMLSerializer.java:699)
+
at com.sun.xml.bind.v2.runtime.property.ArrayElementNodeProperty.serializeItem(ArrayElementNodeProperty.java:69)
+
at com.sun.xml.bind.v2.runtime.property.ArrayElementProperty.serializeListBody(ArrayElementProperty.java:172)
+
at com.sun.xml.bind.v2.runtime.property.ArrayERProperty.serializeBody(ArrayERProperty.java:159)
+
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeBody(ClassBeanInfoImpl.java:344)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsSoleContent(XMLSerializer.java:597)
+
at com.sun.xml.bind.v2.runtime.ClassBeanInfoImpl.serializeRoot(ClassBeanInfoImpl.java:328)
+
at com.sun.xml.bind.v2.runtime.XMLSerializer.childAsRoot(XMLSerializer.java:498)
+
at com.sun.xml.bind.v2.runtime.MarshallerImpl.write(MarshallerImpl.java:320)
+
at com.sun.xml.bind.v2.runtime.MarshallerImpl.marshal(MarshallerImpl.java:249)
at javax.xml.bind.helpers.AbstractMarshallerImpl.marshal(AbstractMarshallerImpl.java:75)
at compbio.engine.conf.RunnerConfigMarshaller.writeAndValidate(RunnerConfigMarshaller.java:88)
at compbio.metadata.OptionMarshallerTester.testMarshalling(OptionMarshallerTester.java:140)
23 lines not shown
back to summary
-compbio.metadata.OptionMarshallerTester:testUnMarshalling
+compbio.metadata.OptionMarshallerTester:testUnMarshalling
+back to summary
+compbio.metadata.PresetTester:marshallPreset
back to summary
-compbio.metadata.PresetTester:marshallPreset
+compbio.metadata.PresetTester:testPresetWithMuptiOptions
back to summary
-compbio.metadata.PresetTester:validatePresets
+compbio.metadata.PresetTester:validatePresets
back to summary
-compbio.metadata.RunnerConfigTester:testCreateNumParameterWithoutValidValue
+compbio.metadata.RunnerConfigTester:testCreateNumParameterWithoutValidValue
Attempting to set default value for parameter: Option name: Matrix
Description: DNA weight matrix
@@ -338,7 +368,7 @@ compbio.metadata.Parameter.setDefaultValue(Parameter.java:234)
23 lines not shown
back to summary
-compbio.metadata.RunnerConfigTester:testCreateParameter
+compbio.metadata.RunnerConfigTester:testCreateParameter
Attempting to set illegal value 'pam22' for the parameter: Option name: Matrix1
Description: Protein weight matrix
@@ -358,9 +388,9 @@ compbio.metadata.Parameter.setDefaultValue(Parameter.java:240)
23 lines not shown
back to summary
-compbio.metadata.RunnerConfigTester:testCreateParameterWithValidValueConstrain
+compbio.metadata.RunnerConfigTester:testCreateParameterWithValidValueConstrain
back to summary
-compbio.metadata.RunnerConfigTester:testOptionNoDefaultValidate
+compbio.metadata.RunnerConfigTester:testOptionNoDefaultValidate
Default value is required as multiple optionNames are defined for option: Option name: Matrix1
Description: Protein weight matrix
@@ -376,7 +406,7 @@ compbio.metadata.Option.validate(Option.java:317)
23 lines not shown
back to summary
-compbio.metadata.RunnerConfigTester:testOptionSetInvalidValue
+compbio.metadata.RunnerConfigTester:testOptionSetInvalidValue
Attempting to set illegal defaultValue 'AAA' which is not defined optionNames for option: Option name: Matrix1
Description: Protein weight matrix
@@ -392,15 +422,15 @@ compbio.metadata.Option.setDefaultValue(Option.java:130)
23 lines not shown
back to summary
-compbio.metadata.RunnerConfigTester:testOptionToCommand
+compbio.metadata.RunnerConfigTester:testOptionToCommand
back to summary
-compbio.metadata.RunnerConfigTester:testParameterToCommand
+compbio.metadata.RunnerConfigTester:testParameterToCommand
back to summary
-compbio.metadata.RunnerConfigTester:testValidate
+compbio.metadata.RunnerConfigTester:testValidate
back to summary
-compbio.metadata.RunnerConfigTester:testValidateBoundaryConstrainCheck
+compbio.metadata.RunnerConfigTester:testValidateBoundaryConstrainCheck
back to summary
-compbio.metadata.RunnerConfigTester:testValidateLowerBoundaryConstrainCheck
+compbio.metadata.RunnerConfigTester:testValidateLowerBoundaryConstrainCheck
Attempting to set default value outside boundaries defined by the constraint: Type: Float
Min: -10.12
@@ -422,7 +452,7 @@ compbio.metadata.Parameter.setDefaultValue(Parameter.java:248)
23 lines not shown
back to summary
-compbio.metadata.RunnerConfigTester:testValidateUpperBoundaryConstrainCheck
+compbio.metadata.RunnerConfigTester:testValidateUpperBoundaryConstrainCheck
Attempting to set default value outside boundaries defined by the constraint: Type: Float
Min: -10.12
@@ -444,7 +474,7 @@ compbio.metadata.Parameter.setDefaultValue(Parameter.java:248)
23 lines not shown
back to summary
-compbio.metadata.RunnerConfigTester:testValidateValueConstrain
+compbio.metadata.RunnerConfigTester:testValidateValueConstrain
Both boundaries (min and max) is undefined for ValueConstrain: Type: Float
@@ -453,174 +483,256 @@ compbio.metadata.ValueConstrain.validate(ValueConstrain.java:208)
23 lines not shown
back to summary
-compbio.runner._impl.MclTester:testGetTestCommand
+compbio.runner._impl.MclTester:testGetTestCommand
+back to summary
+compbio.runner._impl.NetNglycTester:testGetTestCommand
+back to summary
+compbio.runner._impl.OBTester:testGetTestArgsCommand
+back to summary
+compbio.runner._impl.OBTester:testGetTestCommand
+back to summary
+compbio.runner._impl.RPSBlastTester:testGetTestArgsCommand
+back to summary
+compbio.runner._impl.RPSBlastTester:testGetTestCommand
+back to summary
+compbio.runner._impl.RonnTester:testGetTestCommand
+back to summary
+compbio.runner._impl.Tmhmm2Tester:testGetTestCommand
+back to summary
+compbio.runner.conservation.AAConTester:readStatistics
+back to summary
+compbio.runner.conservation.AAConTester:testConfigurationLoading
+back to summary
+compbio.runner.conservation.AAConTester:testPersistance
+back to summary
+compbio.runner.conservation.AAConTester:testRunLocally
+back to summary
+compbio.runner.conservation.AAConTester:testRunLocallyOnTwoCpu
+back to summary
+compbio.runner.conservation.AAConTester:testRunLocallyWithPreset
+back to summary
+compbio.runner.conservation.AAConTester:testRunOnCluster
+back to summary
+compbio.runner.conservation.AAConTester:testRunOnClusterAsync
+back to summary
+compbio.runner.disorder.DisemblTester:readStatistics
+back to summary
+compbio.runner.disorder.DisemblTester:testConfigurationLoading
+back to summary
+compbio.runner.disorder.DisemblTester:testPersistance
+back to summary
+compbio.runner.disorder.DisemblTester:testRunLocally
+back to summary
+compbio.runner.disorder.DisemblTester:testRunOnCluster
+back to summary
+compbio.runner.disorder.DisemblTester:testRunOnClusterAsync
+back to summary
+compbio.runner.disorder.GlobPlotTester:readStatistics
+back to summary
+compbio.runner.disorder.GlobPlotTester:testConfigurationLoading
+back to summary
+compbio.runner.disorder.GlobPlotTester:testPersistance
+back to summary
+compbio.runner.disorder.GlobPlotTester:testRunLocally
+back to summary
+compbio.runner.disorder.GlobPlotTester:testRunOnCluster
+back to summary
+compbio.runner.disorder.GlobPlotTester:testRunOnClusterAsync
+back to summary
+compbio.runner.disorder.IUPredTester:testConfigurationLoading
+back to summary
+compbio.runner.disorder.IUPredTester:testPersistance
+back to summary
+compbio.runner.disorder.IUPredTester:testReadResults
+back to summary
+compbio.runner.disorder.IUPredTester:testRunLocally
+back to summary
+compbio.runner.disorder.IUPredTester:testRunLocallyWithParams
+back to summary
+compbio.runner.disorder.IUPredTester:testRunOnCluster
+back to summary
+compbio.runner.disorder.IUPredTester:testRunOnClusterAsync
+back to summary
+compbio.runner.disorder.IUPredTester:testSetParameter
+back to summary
+compbio.runner.disorder.JronnTester:readStatistics
+back to summary
+compbio.runner.disorder.JronnTester:testConfigurationLoading
+back to summary
+compbio.runner.disorder.JronnTester:testPersistance
+back to summary
+compbio.runner.disorder.JronnTester:testRunLocally
+back to summary
+compbio.runner.disorder.JronnTester:testRunLocallyOnTwoCpu
+back to summary
+compbio.runner.disorder.JronnTester:testRunOnCluster
back to summary
-compbio.runner._impl.NetNglycTester:testGetTestCommand
+compbio.runner.disorder.JronnTester:testRunOnClusterAsync
back to summary
-compbio.runner._impl.OBTester:testGetTestArgsCommand
+compbio.runner.msa.ClustalWParametersTester:testArguments
back to summary
-compbio.runner._impl.OBTester:testGetTestCommand
+compbio.runner.msa.ClustalWParametersTester:testConfiguration
back to summary
-compbio.runner._impl.RPSBlastTester:testGetTestArgsCommand
+compbio.runner.msa.ClustalWParametersTester:testConstrainedParametersMaxValues
back to summary
-compbio.runner._impl.RPSBlastTester:testGetTestCommand
+compbio.runner.msa.ClustalWParametersTester:testConstrainedParametersMinValues
back to summary
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