X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2FArchaeopteryx.wiki;h=7700953bcccdb8e4dada9a4272da7460e8a72f0d;hb=4e57c7dc6990ca5d36f8df6fdbd9c7917da87623;hp=4197aec55247068591d80dd834d98e0934e59e39;hpb=bc04686dd9d022dc2ab814051a6f0456f072b61c;p=jalview.git

diff --git a/wiki/Archaeopteryx.wiki b/wiki/Archaeopteryx.wiki
index 4197aec..7700953 100644
--- a/wiki/Archaeopteryx.wiki
+++ b/wiki/Archaeopteryx.wiki
@@ -6,13 +6,17 @@
 Under development!
 
 Documentation, tutorial, and examples for visualization, analysis, and editing of phylogenetic trees with [http://www.phylosoft.org/archaeopteryx/ Archaeopteryx].
+Some (older) documentation can also be found [http://aptxevo.wordpress.com/ here].
+
+For developers: Information on the underlying [http://www.phylosoft.org/forester/ forester] framework is available [forester here].
 
 Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical Research Institute
 
+
  
 Copyright (C) 2012 Christian M Zmasek. All rights reserved.
 
-
+----
 
 = Frequently Asked Questions =
 
@@ -21,11 +25,9 @@ Copyright (C) 2012 Christian M Zmasek. All rights reserved.
 Aptx can be used to display vector or expression data associated with tree nodes:
 
   # Ensure the configuration file contains this line: "show_vector_data:               display yes"
-
   # Start Aptx and read in a tree ([http://forester.googlecode.com/files/apaf.xml example tree])
+  # Open "Tools" menu and select "read Vector/Expression Values" to read in a matrix (of, for example, expression values) ([http://forester.googlecode.com/files/apaf_expression.tab example expression values])
 
-  # Open "Tools" menu and select "read Vector/Expression Values"
-
-
+It is also possible to store vector data in phyloXML formatted files ([http://forester.googlecode.com/files/apaf_with_vector_data.xml example]).
 
-"show_vector_data: display no"
\ No newline at end of file
+----
\ No newline at end of file