X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2FArchaeopteryx.wiki;h=7700953bcccdb8e4dada9a4272da7460e8a72f0d;hb=7019346e7e8cecf22a06ffb59ea86daf0d28189d;hp=b9b3ae67136ce3f46fd52886bc47cae03c622282;hpb=cd00e7eb743bf9863f71881e4f090e9b113d2526;p=jalview.git

diff --git a/wiki/Archaeopteryx.wiki b/wiki/Archaeopteryx.wiki
index b9b3ae6..7700953 100644
--- a/wiki/Archaeopteryx.wiki
+++ b/wiki/Archaeopteryx.wiki
@@ -6,8 +6,9 @@
 Under development!
 
 Documentation, tutorial, and examples for visualization, analysis, and editing of phylogenetic trees with [http://www.phylosoft.org/archaeopteryx/ Archaeopteryx].
+Some (older) documentation can also be found [http://aptxevo.wordpress.com/ here].
 
-Information on the underlying forester framework is here: [forester].
+For developers: Information on the underlying [http://www.phylosoft.org/forester/ forester] framework is available [forester here].
 
 Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical Research Institute
 
@@ -15,7 +16,7 @@ Author: [http://www.cmzmasek.net/ Christian M Zmasek], Sanford-Burnham Medical R
  
 Copyright (C) 2012 Christian M Zmasek. All rights reserved.
 
-
+----
 
 = Frequently Asked Questions =
 
@@ -25,4 +26,8 @@ Aptx can be used to display vector or expression data associated with tree nodes
 
   # Ensure the configuration file contains this line: "show_vector_data:               display yes"
   # Start Aptx and read in a tree ([http://forester.googlecode.com/files/apaf.xml example tree])
-  # Open "Tools" menu and select "read Vector/Expression Values" ([http://forester.googlecode.com/files/apaf_expression.tab example expression values])
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+  # Open "Tools" menu and select "read Vector/Expression Values" to read in a matrix (of, for example, expression values) ([http://forester.googlecode.com/files/apaf_expression.tab example expression values])
+
+It is also possible to store vector data in phyloXML formatted files ([http://forester.googlecode.com/files/apaf_with_vector_data.xml example]).
+
+----
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