X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2FGSDI.wiki;h=4bd8a2545a82e679d41bc006d951e5ba394698f3;hb=7dfb4a1c4a6be844e3f96a65a3cdc6c4494e834e;hp=a875f25883bc57f65884e13bbfa6a4a2a8c44c4f;hpb=c5ab23290f8f52cf0f3446283297ce2e087cd902;p=jalview.git diff --git a/wiki/GSDI.wiki b/wiki/GSDI.wiki index a875f25..4bd8a25 100644 --- a/wiki/GSDI.wiki +++ b/wiki/GSDI.wiki @@ -1,27 +1,3 @@ -#summary preprocessing of gene trees for speciation/duplication inference +#summary generalized speciation duplication inference -= Generalized Speciation Duplication Inference - -== Purpose == - -Infer duplication events on a gene tree given a trusted species tree. - -== Usage == -{{{ -java -Xmx1024m -cp -path/to/forester.jar org.forester.application.gene_tree_preprocess -}}} - - - -== Details == - -Output consists of three files: - * input-name_preprocessed_gene_tree.phylo.xml - * input-name_species_present.txt - * input-name_removed_nodes.txt - - -== Download == - -Download forester.jar here: http://code.google.com/p/forester/downloads/list \ No newline at end of file +https://sites.google.com/site/cmzmasek/home/software/forester/gsdi \ No newline at end of file