X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2FRIO.wiki;h=30051ea7e03e294c65bd7c09b504d05d7444996b;hb=dcf877d3b3055f11e090023903a2571a08d939db;hp=0d5060c5b8908d0cbd5f88f7916c04d84f07e894;hpb=4fb5d6c071fcf5bce32ce9dabbc8b4598c32e236;p=jalview.git diff --git a/wiki/RIO.wiki b/wiki/RIO.wiki index 0d5060c..30051ea 100644 --- a/wiki/RIO.wiki +++ b/wiki/RIO.wiki @@ -30,8 +30,9 @@ The species tree ideally is in [http://www.biomedcentral.com/1471-2105/10/356/ p The species tree is allowed to have nodes with more than two descendants (polytomies), as long as the (slower) GSDIR ([GSDI GSDI] re-rooting) algorithm is used. -=== Example === +=== Examples === `rio gene_trees.nh species.xml outtable.tsv log.txt` + `rio gene_trees.nh species.xml outtable.tsv log.txt -r=outgroup -o=XVL1_ECOLI` === Example files ===