X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=wiki%2FRIO.wiki;h=8bafb64c0a51ea3fe2cdbc47689d65d8ad857f19;hb=bfd17a215d89bce322b5d77163f0d1d6cedb390c;hp=e9ca2dd521ce3eaff2974cf50f6684b3c7be9fa0;hpb=64b3bcfb2efad989919e2421040e7e35dea7ad98;p=jalview.git diff --git a/wiki/RIO.wiki b/wiki/RIO.wiki index e9ca2dd..8bafb64 100644 --- a/wiki/RIO.wiki +++ b/wiki/RIO.wiki @@ -24,7 +24,7 @@ All gene trees must be *completely binary*. ==== Species tree ==== Must be in [http://www.biomedcentral.com/1471-2105/10/356/ phyloXML] format ([http://forester.googlecode.com/files/species_tree_rio.xml example]). -The species tree is allowed to have nodes with more than two descendents (polytomies) as long as GSDIR ([GSDI GSDI] re-rooting) algorithm is used. +The species tree is allowed to have nodes with more than two descendents (polytomies), as long as the (slower) GSDIR ([GSDI GSDI] re-rooting) algorithm is used. === Example ===